ENTRY T00001 Complete Genome NAME hin, H.influenzae, HAEIN, 71421 DEFINITION Haemophilus influenzae Rd KW20 (serotype d) ANNOTATION manual TAXONOMY TAX:71421 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Meningitis, septicemia, otitis media, sinusitis and chronic bronchitis CHROMOSOME Circular SEQUENCE RS:NC_000907 LENGTH 1830138 STATISTICS Number of nucleotides: 1830138 Number of protein genes: 1657 Number of RNA genes: 81 REFERENCE PMID:7542800 AUTHORS Fleischmann RD, et al. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. JOURNAL Science 269:496-512 (1995) /// ENTRY T00002 Complete Genome NAME mge, M.genitalium, MYCGE, 243273 DEFINITION Mycoplasma genitalium G-37 ANNOTATION manual TAXONOMY TAX:243273 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Urogenital or respiratory tract infections CHROMOSOME Circular SEQUENCE RS:NC_000908 LENGTH 580076 STATISTICS Number of nucleotides: 580076 Number of protein genes: 475 Number of RNA genes: 39 REFERENCE PMID:7569993 AUTHORS Fraser CM, et al. TITLE The minimal gene complement of Mycoplasma genitalium. JOURNAL Science 270:397-403 (1995) /// ENTRY T00003 Complete Genome NAME mja, M.jannaschii, METJA, 243232 DEFINITION Methanococcus jannaschii DSM 2661 (Methanocaldococcus jannaschii DSM 2661) ANNOTATION manual TAXONOMY TAX:243232 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_000909 LENGTH 1664970 PLASMID ECL; Circular SEQUENCE RS:NC_001732 LENGTH 58407 PLASMID ECS; Circular SEQUENCE RS:NC_001733 LENGTH 16550 STATISTICS Number of nucleotides: 1739927 Number of protein genes: 1786 Number of RNA genes: 43 REFERENCE PMID:8688087 AUTHORS Bult CJ, et al. TITLE Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. JOURNAL Science 273:1058-73 (1996) /// ENTRY T00004 Complete Genome NAME syn, Synechocystis, SYNY3, 1148 DEFINITION Synechocystis sp. PCC 6803 ANNOTATION manual TAXONOMY TAX:1148 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechocystis DATA_SOURCE RefSeq ORIGINAL_DB CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_000911 LENGTH 3573470 PLASMID pSYSA; Circular SEQUENCE RS:NC_005230 LENGTH 103307 PLASMID pSYSG; Circular SEQUENCE RS:NC_005231 LENGTH 44343 PLASMID pSYSM; Circular SEQUENCE RS:NC_005229 LENGTH 119895 PLASMID pSYSX; Circular SEQUENCE RS:NC_005232 LENGTH 106004 STATISTICS Number of nucleotides: 3947019 Number of protein genes: 3569 Number of RNA genes: 50 REFERENCE PMID:8905231 AUTHORS Kaneko T, et al. TITLE Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. JOURNAL DNA Res 3:109-36 (1996) REFERENCE PMID:8590279 AUTHORS Kaneko T, et al. TITLE Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome. JOURNAL DNA Res 2:153-66, 191-8 (1995) /// ENTRY T00005 Complete Genome NAME sce, S.cerevisiae, YEAST, 4932 DEFINITION Saccharomyces cerevisiae S288C ANNOTATION manual TAXONOMY TAX:4932 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces DATA_SOURCE RefSeq ORIGINAL_DB SGD MIPS CHROMOSOME I SEQUENCE RS:NC_001133 LENGTH 230208 CHROMOSOME II SEQUENCE RS:NC_001134 LENGTH 813178 CHROMOSOME III SEQUENCE RS:NC_001135 LENGTH 316617 CHROMOSOME IV SEQUENCE RS:NC_001136 LENGTH 1531919 CHROMOSOME V SEQUENCE RS:NC_001137 LENGTH 576869 CHROMOSOME VI SEQUENCE RS:NC_001138 LENGTH 270148 CHROMOSOME VII SEQUENCE RS:NC_001139 LENGTH 1090947 CHROMOSOME VIII SEQUENCE RS:NC_001140 LENGTH 562643 CHROMOSOME IX SEQUENCE RS:NC_001141 LENGTH 439885 CHROMOSOME X SEQUENCE RS:NC_001142 LENGTH 745741 CHROMOSOME XI SEQUENCE RS:NC_001143 LENGTH 666454 CHROMOSOME XII SEQUENCE RS:NC_001144 LENGTH 1078175 CHROMOSOME XIII SEQUENCE RS:NC_001145 LENGTH 924429 CHROMOSOME XIV SEQUENCE RS:NC_001146 LENGTH 784333 CHROMOSOME XV SEQUENCE RS:NC_001147 LENGTH 1091289 CHROMOSOME XVI SEQUENCE RS:NC_001148 LENGTH 948062 CHROMOSOME MT (mitochondrion); Circular SEQUENCE RS:NC_001224 LENGTH 85779 STATISTICS Number of nucleotides: 12156676 Number of protein genes: 5881 Number of RNA genes: 414 REFERENCE PMID:8849441 AUTHORS Goffeau A, et al. TITLE Life with 6000 genes. JOURNAL Science 274:546-67 (1996) REFERENCE PMID:7731988 (chromosome I) AUTHORS Bussey H, et al. TITLE The nucleotide sequence of chromosome I from Saccharomyces cerevisiae. JOURNAL Proc Natl Acad Sci U S A 92:3809-13 (1995) REFERENCE PMID:7813418 (chromosome II) AUTHORS Feldmann,H., et al. TITLE Complete DNA sequence of yeast chromosome II. JOURNAL EMBO J 13:5795-809 (1994) REFERENCE PMID:1574125 (chromosome III) AUTHORS Oliver,S.G., et al. TITLE The complete DNA sequence of yeast chromosome III. JOURNAL Nature 357:38-46 (1992) REFERENCE PMID:9169867 (chromosome IV) AUTHORS Jacq C, et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome IV. JOURNAL Nature 387(6632 Suppl):75-8 (1997) REFERENCE PMID:9169868 (chromosome V) AUTHORS Dietrich FS, et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome V. JOURNAL Nature 387(6632 Suppl):78-81 (1997) REFERENCE PMID:7670463 (chromosome VI) AUTHORS Murakami,Y., et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. JOURNAL Nat Genet 10:261-8 (1995) REFERENCE PMID:9169869 (chromosome VII) AUTHORS Tettelin H, et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome VII. JOURNAL Nature 387(6632 Suppl):81-4 (1997) REFERENCE PMID:8091229 (chromosome VIII) AUTHORS Johnston,M., et al. TITLE Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. JOURNAL Science 265:2077-82 (1994) REFERENCE PMID:9169870 (chromosome IX) AUTHORS Churcher C, et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. JOURNAL Nature 387(6632 Suppl):84-7 (1997) REFERENCE PMID:8641269 (chromosome X) AUTHORS Galibert,F., et al. TITLE Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X. JOURNAL EMBO J 15:2031-49 (1996) REFERENCE PMID:8196765 (chromosome XI) AUTHORS Dujon,B., et al. TITLE Complete DNA sequence of yeast chromosome XI. JOURNAL Nature 369:371-8 (1994) REFERENCE PMID:9169871 (chromosome XII) AUTHORS Johnston M, et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. JOURNAL Nature 387(6632 Suppl):87-90 (1997) REFERENCE PMID:9169872 (chromosome XIII) AUTHORS Bowman S, et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII. JOURNAL Nature 387(6632 Suppl):90-3 (1997) REFERENCE PMID:9169873 (chromosome XIV) AUTHORS Philippsen P, et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications. JOURNAL Nature 387(6632 Suppl):93-8 (1997) REFERENCE PMID:9169874 (chromosome XV) AUTHORS Dujon B, et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome XV. JOURNAL Nature 387(6632 Suppl):98-102 (1997) REFERENCE PMID:9169875 (chromosome XVI) AUTHORS Bussey H, et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. JOURNAL Nature 387(6632 Suppl):103-5 (1997) /// ENTRY T00006 Complete Genome NAME mpn, M.pneumoniae, MYCPN, 272634 DEFINITION Mycoplasma pneumoniae M129 ANNOTATION manual TAXONOMY TAX:272634 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB ZMBH DISEASE Atypical pneumonia in older children and young adults CHROMOSOME Circular SEQUENCE RS:NC_000912 LENGTH 816394 STATISTICS Number of nucleotides: 816394 Number of protein genes: 689 Number of RNA genes: 44 REFERENCE PMID:8948633 AUTHORS Himmelreich R, et al. TITLE Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. JOURNAL Nucleic Acids Res 24:4420-49 (1996) /// ENTRY T00007 Complete Genome NAME eco, E.coli, ECOLI, 511145 DEFINITION Escherichia coli K-12 MG1655 ANNOTATION manual TAXONOMY TAX:511145 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Wisconsin Pasteur RegulonDB EcoGene ECOCYC CHROMOSOME Circular SEQUENCE RS:NC_000913 LENGTH 4639675 STATISTICS Number of nucleotides: 4639675 Number of protein genes: 4144 Number of RNA genes: 176 REFERENCE PMID:9278503 AUTHORS Blattner FR, et al. TITLE The complete genome sequence of Escherichia coli K-12. JOURNAL Science 277:1453-74 (1997) /// ENTRY T00008 Complete Genome NAME hpy, H.pylori, HELPY, 85962 DEFINITION Helicobacter pylori 26695 ANNOTATION manual TAXONOMY TAX:85962 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Gastric inflammation, peptic ulcer disease CHROMOSOME Circular SEQUENCE RS:NC_000915 LENGTH 1667867 STATISTICS Number of nucleotides: 1667867 Number of protein genes: 1573 Number of RNA genes: 43 REFERENCE PMID:9252185 AUTHORS Tomb JF, et al. TITLE The complete genome sequence of the gastric pathogen Helicobacter pylori. JOURNAL Nature 388:539-47 (1997) /// ENTRY T00009 Complete Genome NAME mth, M.thermoautotrophicum, METTH, 187420 DEFINITION Methanobacterium thermoautotrophicum deltaH ANNOTATION manual TAXONOMY TAX:187420 LINEAGE Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter DATA_SOURCE RefSeq ORIGINAL_DB Ohio State Univ. CHROMOSOME Circular SEQUENCE RS:NC_000916 LENGTH 1751377 STATISTICS Number of nucleotides: 1751377 Number of protein genes: 1873 Number of RNA genes: 48 REFERENCE PMID:9371463 AUTHORS Smith DR, et al. TITLE Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics. JOURNAL J Bacteriol 179:7135-55 (1997) /// ENTRY T00010 Complete Genome NAME bsu, B.subtilis, BACSU, 224308 DEFINITION Bacillus subtilis 168 ANNOTATION manual TAXONOMY TAX:224308 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus DATA_SOURCE RefSeq ORIGINAL_DB Pasteur BSORF JCVI-Pathema CHROMOSOME Circular SEQUENCE RS:NC_000964 LENGTH 4215606 STATISTICS Number of nucleotides: 4215606 Number of protein genes: 4176 Number of RNA genes: 178 REFERENCE PMID:9384377 AUTHORS Kunst F, et al. TITLE The complete genome sequence of the gram-positive bacterium Bacillus subtilis. JOURNAL Nature 390:249-56 (1997) /// ENTRY T00011 Complete Genome NAME afu, A.fulgidus, ARCFU, 224325 DEFINITION Archaeoglobus fulgidus DSM 4304 (VC-16) ANNOTATION manual TAXONOMY TAX:224325 LINEAGE Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_000917 LENGTH 2178400 STATISTICS Number of nucleotides: 2178400 Number of protein genes: 2420 Number of RNA genes: 49 REFERENCE PMID:9389475 AUTHORS Klenk HP, et al. TITLE The complete genome sequence of the hyperthermophilic, sulphate- reducing archaeon Archaeoglobus fulgidus. JOURNAL Nature 390:364-70 (1997) /// ENTRY T00012 Complete Genome NAME bbu, B.burgdorferi, BORBU, 224326 DEFINITION Borrelia burgdorferi B31 ANNOTATION manual TAXONOMY TAX:224326 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia; Borrelia burgdorferi group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Lyme disease CHROMOSOME (linear chromosome) SEQUENCE RS:NC_001318 LENGTH 910724 PLASMID lp17 SEQUENCE RS:NC_001849 LENGTH 16823 PLASMID lp25 SEQUENCE RS:NC_001850 LENGTH 24177 PLASMID lp28-1 SEQUENCE RS:NC_001851 LENGTH 26921 PLASMID lp28-2 SEQUENCE RS:NC_001852 LENGTH 29766 PLASMID lp28-3 SEQUENCE RS:NC_001853 LENGTH 28601 PLASMID lp28-4 SEQUENCE RS:NC_001854 LENGTH 27323 PLASMID lp36 SEQUENCE RS:NC_001855 LENGTH 36849 PLASMID lp38 SEQUENCE RS:NC_001856 LENGTH 38829 PLASMID lp54 SEQUENCE RS:NC_001857 LENGTH 53561 PLASMID cp26; Circular SEQUENCE RS:NC_001903 LENGTH 26498 PLASMID cp9; Circular SEQUENCE RS:NC_001904 LENGTH 9386 PLASMID cp32-1; Circular SEQUENCE RS:NC_000948 LENGTH 30750 PLASMID cp32-3; Circular SEQUENCE RS:NC_000949 LENGTH 30223 PLASMID cp32-4; Circular SEQUENCE RS:NC_000950 LENGTH 30299 PLASMID cp32-6; Circular SEQUENCE RS:NC_000951 LENGTH 29838 PLASMID cp32-7; Circular SEQUENCE RS:NC_000952 LENGTH 30800 PLASMID cp32-8; Circular SEQUENCE RS:NC_000953 LENGTH 30885 PLASMID cp32-9; Circular SEQUENCE RS:NC_000954 LENGTH 30651 PLASMID lp21 SEQUENCE RS:NC_000955 LENGTH 18753 PLASMID lp56 SEQUENCE RS:NC_000956 LENGTH 52971 PLASMID lp5 SEQUENCE RS:NC_000957 LENGTH 5228 STATISTICS Number of nucleotides: 1519856 Number of protein genes: 1640 Number of RNA genes: 23 REFERENCE PMID:9403685 AUTHORS Fraser CM, et al. TITLE Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. JOURNAL Nature 390:580-6 (1997) /// ENTRY T00013 Complete Genome NAME aae, A.aeolicus, AQUAE, 224324 DEFINITION Aquifex aeolicus VF5 ANNOTATION manual TAXONOMY TAX:224324 LINEAGE Bacteria; Aquificae; Aquificales; Aquificaceae; Aquifex DATA_SOURCE RefSeq ORIGINAL_DB Diversa CHROMOSOME Circular SEQUENCE RS:NC_000918 LENGTH 1551335 PLASMID ece1; Circular SEQUENCE RS:NC_001880 LENGTH 39456 STATISTICS Number of nucleotides: 1590791 Number of protein genes: 1560 Number of RNA genes: 50 REFERENCE PMID:9537320 AUTHORS Deckert G, et al. TITLE The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. JOURNAL Nature 392:353-8 (1998) /// ENTRY T00014 Complete Genome NAME pho, P.horikoshii, PYRHO, 70601 DEFINITION Pyrococcus horikoshii OT3 ANNOTATION manual TAXONOMY TAX:70601 LINEAGE Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME Circular SEQUENCE RS:NC_000961 LENGTH 1738505 STATISTICS Number of nucleotides: 1738505 Number of protein genes: 1955 Number of RNA genes: 50 REFERENCE PMID:9679194 AUTHORS Kawarabayasi Y, et al. TITLE Complete sequence and gene organization of the genome of a hyper- thermophilic archaebacterium, Pyrococcus horikoshii OT3. JOURNAL DNA Res 5:55-76 (1998) /// ENTRY T00015 Complete Genome NAME mtu, M.tuberculosis, MYCTU, 83332 DEFINITION Mycobacterium tuberculosis H37Rv, laboratory strain ANNOTATION manual TAXONOMY TAX:83332 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex DATA_SOURCE RefSeq ORIGINAL_DB Sanger Pasteur DISEASE Tuberculosis CHROMOSOME Circular SEQUENCE RS:NC_000962 LENGTH 4411532 STATISTICS Number of nucleotides: 4411532 Number of protein genes: 3988 Number of RNA genes: 50 REFERENCE PMID:9634230 AUTHORS Cole ST, et al. TITLE Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. JOURNAL Nature 393:537-44 (1998) /// ENTRY T00016 Complete Genome NAME tpa, T.pallidum, TREPA, 243276 DEFINITION Treponema pallidum subsp. pallidum Nichols ANNOTATION manual TAXONOMY TAX:243276 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Syphilis CHROMOSOME Circular SEQUENCE RS:NC_000919 LENGTH 1138011 STATISTICS Number of nucleotides: 1138011 Number of protein genes: 1036 Number of RNA genes: 51 REFERENCE PMID:9665876 AUTHORS Fraser CM, et al. TITLE Complete genome sequence of Treponema pallidum, the syphilis spirochete. JOURNAL Science 281:375-88 (1998) /// ENTRY T00017 Complete Genome NAME ctr, C.trachomatis, CHLTR, 272561 DEFINITION Chlamydia trachomatis D/UW-3/CX (serovar D) ANNOTATION manual TAXONOMY TAX:272561 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia DATA_SOURCE RefSeq ORIGINAL_DB Stanford DISEASE Urethritis, cervicitis, inclusion conjunctivitis, trachoma CHROMOSOME Circular SEQUENCE RS:NC_000117 LENGTH 1042519 STATISTICS Number of nucleotides: 1042519 Number of protein genes: 895 Number of RNA genes: 45 REFERENCE PMID:9784136 AUTHORS Stephens RS, et al. TITLE Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. JOURNAL Science 282:754-9 (1998) /// ENTRY T00018 Complete Genome NAME rpr, R.prowazekii, RICPR, 272947 DEFINITION Rickettsia prowazekii Madrid E ANNOTATION manual TAXONOMY TAX:272947 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; typhus group DATA_SOURCE RefSeq ORIGINAL_DB Uppsala DISEASE Louse-born endemic typhus CHROMOSOME Circular SEQUENCE RS:NC_000963 LENGTH 1111523 STATISTICS Number of nucleotides: 1111523 Number of protein genes: 835 Number of RNA genes: 37 REFERENCE PMID:9823893 AUTHORS Andersson SG, et al. TITLE The genome sequence of Rickettsia prowazekii and the origin of mitochondria. JOURNAL Nature 396:133-40 (1998) /// ENTRY T00019 Complete Genome NAME cel, C.elegans, CAEEL, 6239 DEFINITION Caenorhabditis elegans (nematode) ANNOTATION manual TAXONOMY TAX:6239 LINEAGE Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis DATA_SOURCE RefSeq ORIGINAL_DB WormBase STATISTICS Number of protein genes: 20185 Number of RNA genes: 24 REFERENCE PMID:9851916 AUTHORS The C. elegans Sequencing Consortium. TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. JOURNAL Science 282:2012-8 (1998) /// ENTRY T00020 Complete Genome NAME hpj, H.pylori_J99, HELPJ, 85963 DEFINITION Helicobacter pylori J99 ANNOTATION manual TAXONOMY TAX:85963 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq ORIGINAL_DB AstraZeneca DISEASE Gastric inflammation, peptic ulcer disease CHROMOSOME Circular SEQUENCE RS:NC_000921 LENGTH 1643831 STATISTICS Number of nucleotides: 1643831 Number of protein genes: 1488 Number of RNA genes: 42 REFERENCE PMID:9923682 AUTHORS Alm RA, et al. TITLE Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. JOURNAL Nature 397:176-80 (1999) /// ENTRY T00021 Complete Genome NAME cpn, C.pneumoniae, CHLPN, 115713 DEFINITION Chlamydophila pneumoniae CWL029 ANNOTATION manual TAXONOMY TAX:115713 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila DATA_SOURCE RefSeq ORIGINAL_DB Stanford DISEASE Pharyngitis, bronchitis and pneumonitis CHROMOSOME Circular SEQUENCE RS:NC_000922 LENGTH 1230230 STATISTICS Number of nucleotides: 1230230 Number of protein genes: 1052 Number of RNA genes: 43 REFERENCE PMID:10192388 AUTHORS Kalman S, et al. TITLE Comparative genomes of Chlamydia pneumoniae and C. trachomatis. JOURNAL Nat Genet 21:385-9 (1999) /// ENTRY T00022 Complete Genome NAME tma, T.maritima, THEMA, 243274 DEFINITION Thermotoga maritima MSB8 ANNOTATION manual TAXONOMY TAX:243274 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_000853 LENGTH 1860725 STATISTICS Number of nucleotides: 1860725 Number of protein genes: 1858 Number of RNA genes: 49 REFERENCE PMID:10360571 AUTHORS Nelson KE, et al. TITLE Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. JOURNAL Nature 399:323-9 (1999) /// ENTRY T00023 Complete Genome NAME ape, A.pernix, AERPE, 272557 DEFINITION Aeropyrum pernix K1 ANNOTATION manual TAXONOMY TAX:272557 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME Circular SEQUENCE RS:NC_000854 LENGTH 1669696 STATISTICS Number of nucleotides: 1669696 Number of protein genes: 1700 Number of RNA genes: 52 REFERENCE PMID:10382966 AUTHORS Kawarabayasi Y, et al. TITLE Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1. JOURNAL DNA Res 6:83-101, 145-52 (1999) /// ENTRY T00024 Complete Genome NAME pab, P.abyssi, PYRAB, 272844 DEFINITION Pyrococcus abyssi GE5 ANNOTATION manual TAXONOMY TAX:272844 LINEAGE Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus DATA_SOURCE RefSeq ORIGINAL_DB Genoscope IGM Orsay CHROMOSOME Circular SEQUENCE RS:NC_000868 LENGTH 1765118 PLASMID pGT5; Circular SEQUENCE RS:NC_001773 LENGTH 3444 STATISTICS Number of nucleotides: 1768562 Number of protein genes: 1782 Number of RNA genes: 97 REFERENCE PMID:12622808 AUTHORS Cohen GN, et al. TITLE An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. JOURNAL Mol Microbiol 47:1495-512 (2003) /// ENTRY T00025 Complete Genome NAME dra, D.radiodurans, DEIRA, 243230 DEFINITION Deinococcus radiodurans R1 ANNOTATION manual TAXONOMY TAX:243230 LINEAGE Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME 1; Circular SEQUENCE RS:NC_001263 LENGTH 2648638 CHROMOSOME 2; Circular SEQUENCE RS:NC_001264 LENGTH 412348 PLASMID MP1; Circular SEQUENCE RS:NC_000958 LENGTH 177466 PLASMID CP1; Circular SEQUENCE RS:NC_000959 LENGTH 45704 STATISTICS Number of nucleotides: 3284156 Number of protein genes: 3167 Number of RNA genes: 57 REFERENCE PMID:10567266 AUTHORS White O, et al. TITLE Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. JOURNAL Science 286:1571-7 (1999) /// ENTRY T00026 Complete Genome NAME cje, C.jejuni, CAMJE, 192222 DEFINITION Campylobacter jejuni subsp. jejuni NCTC 11168 ANNOTATION manual TAXONOMY TAX:192222 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB Sanger GeneDB DISEASE Food poisoning, Guillain-Barre syndromes, Miller-Fisher syndromes CHROMOSOME Circular SEQUENCE RS:NC_002163 LENGTH 1641481 STATISTICS Number of nucleotides: 1641481 Number of protein genes: 1623 Number of RNA genes: 56 REFERENCE PMID:10688204 AUTHORS Parkhill J, et al. TITLE The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences. JOURNAL Nature 403:665-8 (2000) /// ENTRY T00027 Complete Genome NAME nme, N.meningitidis, NEIMB, 122586 DEFINITION Neisseria meningitidis MC58 (serogroup B) ANNOTATION manual TAXONOMY TAX:122586 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Meningitis and septicemia CHROMOSOME Circular SEQUENCE RS:NC_003112 LENGTH 2272360 STATISTICS Number of nucleotides: 2272360 Number of protein genes: 2063 Number of RNA genes: 71 REFERENCE PMID:10710307 AUTHORS Tettelin H, et al. TITLE Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. JOURNAL Science 287:1809-15 (2000) /// ENTRY T00028 Complete Genome NAME cmu, C.muridarum, CHLMU, 243161 DEFINITION Chlamydia muridarum Nigg (Chlamydia trachomatis MoPn) ANNOTATION manual TAXONOMY TAX:243161 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Pharyngitis, bronchitis and pneumonitis CHROMOSOME Circular SEQUENCE RS:NC_002620 LENGTH 1072950 PLASMID pMoPn; Circular SEQUENCE RS:NC_002182 LENGTH 7501 STATISTICS Number of nucleotides: 1080451 Number of protein genes: 911 Number of RNA genes: 43 REFERENCE PMID:10684935 AUTHORS Read TD, et al. TITLE Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. JOURNAL Nucleic Acids Res 28:1397-406 (2000) /// ENTRY T00029 Complete Genome NAME cpa, C.pneumoniae_AR39, CHLPN, 115711 DEFINITION Chlamydophila pneumoniae AR39 ANNOTATION manual TAXONOMY TAX:115711 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Pharyngitis, bronchitis and pneumonitis CHROMOSOME Circular SEQUENCE RS:NC_002179 LENGTH 1229853 STATISTICS Number of nucleotides: 1229853 Number of protein genes: 1112 Number of RNA genes: 41 REFERENCE PMID:10684935 AUTHORS Read TD, et al. TITLE Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. JOURNAL Nucleic Acids Res 28:1397-406 (2000) /// ENTRY T00030 Complete Genome NAME dme, D.melanogaster, DROME, 7227 DEFINITION Drosophila melanogaster (fruit fly) ANNOTATION manual TAXONOMY TAX:7227 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 13827 Number of RNA genes: 24 REFERENCE PMID:10731132 AUTHORS Adams MD, et al. TITLE The genome sequence of Drosophila melanogaster. JOURNAL Science 287:2185-95 (2000) /// ENTRY T00031 Complete Genome NAME nma, N.meningitidis_A, NEIMA, 122587 DEFINITION Neisseria meningitidis Z2491 (serogroup A) ANNOTATION manual TAXONOMY TAX:122587 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Meningitis and septicemia CHROMOSOME Circular SEQUENCE RS:NC_003116 LENGTH 2184406 STATISTICS Number of nucleotides: 2184406 Number of protein genes: 1909 Number of RNA genes: 71 REFERENCE PMID:10761919 AUTHORS Parkhill J, et al. TITLE Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491. JOURNAL Nature 404:502-6 (2000) /// ENTRY T00032 Complete Genome NAME cpj, C.pneumoniae_J138, CHLPN, 138677 DEFINITION Chlamydophila pneumoniae J138 ANNOTATION manual TAXONOMY TAX:138677 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila DATA_SOURCE RefSeq ORIGINAL_DB Kyushu U DISEASE Pharyngitis, bronchitis and pneumonitis CHROMOSOME Circular SEQUENCE RS:NC_002491 LENGTH 1226565 STATISTICS Number of nucleotides: 1226565 Number of protein genes: 1069 Number of RNA genes: 41 REFERENCE PMID:10871362 AUTHORS Shirai M, et al. TITLE Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA. JOURNAL Nucleic Acids Res 28:2311-4 (2000) /// ENTRY T00033 Complete Genome NAME xfa, X.fastidiosa, XYLFA, 160492 DEFINITION Xylella fastidiosa 9a5c ANNOTATION manual TAXONOMY TAX:160492 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella DATA_SOURCE RefSeq ORIGINAL_DB Unicamp DISEASE Citrus variegated chlorosis CHROMOSOME Circular SEQUENCE RS:NC_002488 LENGTH 2679306 PLASMID pXF1.3; Circular SEQUENCE RS:NC_002489 LENGTH 1286 PLASMID pXF51; Circular SEQUENCE RS:NC_002490 LENGTH 51158 STATISTICS Number of nucleotides: 2731750 Number of protein genes: 2832 Number of RNA genes: 56 REFERENCE PMID:10910347 AUTHORS Simpson AJ, et al. TITLE The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis. JOURNAL Nature 406:151-7 (2000) /// ENTRY T00034 Complete Genome NAME vch, V.cholerae, VIBCH, 243277 DEFINITION Vibrio cholerae El Tor N16961 (biovar eltor) ANNOTATION manual TAXONOMY TAX:243277 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Cholera CHROMOSOME I; Circular SEQUENCE RS:NC_002505 LENGTH 2961149 CHROMOSOME II; Circular SEQUENCE RS:NC_002506 LENGTH 1072315 STATISTICS Number of nucleotides: 4033464 Number of protein genes: 3834 Number of RNA genes: 123 REFERENCE PMID:10952301 AUTHORS Heidelberg JF, et al. TITLE DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. JOURNAL Nature 406:477-83 (2000) /// ENTRY T00035 Complete Genome NAME pae, P.aeruginosa, PSEAE, 208964 DEFINITION Pseudomonas aeruginosa PA01 ANNOTATION manual TAXONOMY TAX:208964 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB PathoGenesis DISEASE Opportunistic infections CHROMOSOME Circular SEQUENCE RS:NC_002516 LENGTH 6264404 STATISTICS Number of nucleotides: 6264404 Number of protein genes: 5566 Number of RNA genes: 98 REFERENCE PMID:10984043 AUTHORS Stover CK, et al. TITLE Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen. JOURNAL Nature 406:959-64 (2000) /// ENTRY T00036 Complete Genome NAME buc, Buchnera, BUCAI, 107806 DEFINITION Buchnera aphidicola APS, endosymbiont of Acyrthosiphon pisum (pea aphid) ANNOTATION manual TAXONOMY TAX:107806 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera DATA_SOURCE RefSeq ORIGINAL_DB RIKEN CHROMOSOME Circular SEQUENCE RS:NC_002528 LENGTH 640681 PLASMID pTrp; Circular SEQUENCE RS:NC_002252 LENGTH 7258 PLASMID pLeu; Circular SEQUENCE RS:NC_002253 LENGTH 7786 STATISTICS Number of nucleotides: 655725 Number of protein genes: 574 Number of RNA genes: 36 REFERENCE PMID:10993077 AUTHORS Shigenobu S, et al. TITLE Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. JOURNAL Nature 407:81-6 (2000) /// ENTRY T00037 Complete Genome NAME tac, T.acidophilum, THEAC, 273075 DEFINITION Thermoplasma acidophilum DSM 1728 ANNOTATION manual TAXONOMY TAX:273075 LINEAGE Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck CHROMOSOME Circular SEQUENCE RS:NC_002578 LENGTH 1564906 STATISTICS Number of nucleotides: 1564906 Number of protein genes: 1482 Number of RNA genes: 48 REFERENCE PMID:11029001 AUTHORS Ruepp A, et al. TITLE The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum. JOURNAL Nature 407:508-13 (2000) /// ENTRY T00038 Complete Genome NAME hal, Halobacterium, HALSA, 64091 DEFINITION Halobacterium salinarium NRC-1 ANNOTATION manual TAXONOMY TAX:64091 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium DATA_SOURCE RefSeq ORIGINAL_DB U.Maryland CHROMOSOME Circular SEQUENCE RS:NC_002607 LENGTH 2014239 PLASMID pNRC200; Circular SEQUENCE RS:NC_002608 LENGTH 365425 PLASMID pNRC100; Circular SEQUENCE RS:NC_001869 LENGTH 191346 STATISTICS Number of nucleotides: 2571010 Number of protein genes: 2622 Number of RNA genes: 52 REFERENCE PMID:11016950 AUTHORS Ng WV, et al. TITLE Genome sequence of Halobacterium species NRC-1. JOURNAL Proc Natl Acad Sci U S A 97:12176-81 (2000) /// ENTRY T00039 Complete Genome NAME bha, B.halodurans, BACHD, 272558 DEFINITION Bacillus halodurans C-125 ANNOTATION manual TAXONOMY TAX:272558 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus DATA_SOURCE RefSeq ORIGINAL_DB JAMSTEC COMMENT Alkaliphilic bacterium CHROMOSOME Circular SEQUENCE RS:NC_002570 LENGTH 4202352 STATISTICS Number of nucleotides: 4202352 Number of protein genes: 4065 Number of RNA genes: 105 REFERENCE PMID:11058132 AUTHORS Takami H, et al. TITLE Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis. JOURNAL Nucleic Acids Res 28:4317-31 (2000) /// ENTRY T00040 Complete Genome NAME uur, U.urealyticum, UREPA, 273119 DEFINITION Ureaplasma parvum serovar 3 ATCC 700970 ANNOTATION manual TAXONOMY TAX:273119 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Ureaplasma DATA_SOURCE RefSeq ORIGINAL_DB Alabama DISEASE Urogenital or respiratory tracts infections CHROMOSOME Circular SEQUENCE RS:NC_002162 LENGTH 751719 STATISTICS Number of nucleotides: 751719 Number of protein genes: 614 Number of RNA genes: 39 REFERENCE PMID:11048724 AUTHORS Glass JI, et al. TITLE The complete sequence of the mucosal pathogen Ureaplasma urealyticum. JOURNAL Nature 407:757-62 (2000) /// ENTRY T00041 Complete Genome NAME ath, A.thaliana, ARATH, 3702 DEFINITION Arabidopsis thaliana (thale cress) ANNOTATION manual TAXONOMY TAX:3702 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis DATA_SOURCE RefSeq ORIGINAL_DB MIPS Kazusa TAIR STATISTICS Number of protein genes: 27361 Number of RNA genes: 68 REFERENCE PMID:11130712 (chromosome 1) AUTHORS Theologis A, et al. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. JOURNAL Nature 408:816-20 (2000) REFERENCE PMID:10617197 (chromosome 2) AUTHORS Lin X, et al. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. JOURNAL Nature 402:761-8 (1999) REFERENCE PMID:11130713 (chromosome 3) AUTHORS Salanoubat M, et al. TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. JOURNAL Nature 408:820-2 (2000) REFERENCE PMID:10617198 (chromosome 4) AUTHORS Mayer K, et al. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. JOURNAL Nature 402:769-77 (1999) REFERENCE PMID:11130714 (chromosome 5) AUTHORS Tabata S, et al. TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. JOURNAL Nature 408:823-6 (2000) /// ENTRY T00042 Complete Genome NAME tvo, T.volcanium, THEVO, 273116 DEFINITION Thermoplasma volcanium GSS1 ANNOTATION manual TAXONOMY TAX:273116 LINEAGE Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma DATA_SOURCE RefSeq ORIGINAL_DB AIST CHROMOSOME Circular SEQUENCE RS:NC_002689 LENGTH 1584804 STATISTICS Number of nucleotides: 1584804 Number of protein genes: 1499 Number of RNA genes: 49 REFERENCE PMID:11121031 AUTHORS Kawashima T, et al. TITLE Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium. JOURNAL Proc Natl Acad Sci U S A 97:14257-62 (2000) /// ENTRY T00043 Complete Genome NAME mlo, M.loti, RHILO, 266835 DEFINITION Mesorhizobium loti MAFF303099 ANNOTATION manual TAXONOMY TAX:266835 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium DATA_SOURCE RefSeq ORIGINAL_DB RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_002678 LENGTH 7036071 PLASMID pMLa; Circular SEQUENCE RS:NC_002679 LENGTH 351911 PLASMID pMLb; Circular SEQUENCE RS:NC_002682 LENGTH 208315 STATISTICS Number of nucleotides: 7596297 Number of protein genes: 7272 Number of RNA genes: 57 REFERENCE PMID:11214968 AUTHORS Kaneko T, et al. TITLE Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. JOURNAL DNA Res 7:331-8 (2000) /// ENTRY T00044 Complete Genome NAME ece, E.coli_O157, ECOLX, 155864 DEFINITION Escherichia coli O157:H7 EDL933 (EHEC) ANNOTATION manual TAXONOMY TAX:155864 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Wisconsin DISEASE Hemorrhagic colitis CHROMOSOME Circular SEQUENCE RS:NC_002655 LENGTH 5528445 PLASMID pO157; Circular SEQUENCE RS:NC_007414 LENGTH 92077 STATISTICS Number of nucleotides: 5620522 Number of protein genes: 5397 Number of RNA genes: 129 REFERENCE PMID:11206551 AUTHORS Perna NT, et al. TITLE Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. JOURNAL Nature 409:529-33 (2001) /// ENTRY T00045 Complete Genome NAME lla, L.lactis, LACLA, 272623 DEFINITION Lactococcus lactis subsp. lactis IL1403 ANNOTATION manual TAXONOMY TAX:272623 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Lactococcus DATA_SOURCE RefSeq ORIGINAL_DB Genoscope INRA CHROMOSOME Circular SEQUENCE RS:NC_002662 LENGTH 2365589 STATISTICS Number of nucleotides: 2365589 Number of protein genes: 2321 Number of RNA genes: 79 REFERENCE PMID:11337471 AUTHORS Bolotin A, et al. TITLE The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. JOURNAL Genome Res 11:731-53 (2001) /// ENTRY T00046 Complete Genome NAME pmu, P.multocida, PASMU, 272843 DEFINITION Pasteurella multocida PM70 ANNOTATION manual TAXONOMY TAX:272843 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella DATA_SOURCE RefSeq ORIGINAL_DB U.Minnesota DISEASE Pasteurellosis CHROMOSOME Circular SEQUENCE RS:NC_002663 LENGTH 2257487 STATISTICS Number of nucleotides: 2257487 Number of protein genes: 2015 Number of RNA genes: 77 REFERENCE PMID:11248100 AUTHORS May BJ, et al. TITLE Complete genomic sequence of Pasteurella multocida, Pm70. JOURNAL Proc Natl Acad Sci U S A 98:3460-5 (2001) /// ENTRY T00047 Complete Genome NAME mle, M.leprae, MYCLE, 272631 DEFINITION Mycobacterium leprae TN ANNOTATION manual TAXONOMY TAX:272631 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB Sanger Pasteur DISEASE Leprosy CHROMOSOME Circular SEQUENCE RS:NC_002677 LENGTH 3268203 STATISTICS Number of nucleotides: 3268203 Number of protein genes: 1605 Number of RNA genes: 50 REFERENCE PMID:11234002 AUTHORS Cole ST, et al. TITLE Massive gene decay in the leprosy bacillus. JOURNAL Nature 409:1007-11 (2001) /// ENTRY T00048 Complete Genome NAME ecs, E.coli_O157J, ECO57, 386585 DEFINITION Escherichia coli O157:H7 Sakai (EHEC) ANNOTATION manual TAXONOMY TAX:386585 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Osaka U DISEASE Hemorrhagic colitis CHROMOSOME Circular SEQUENCE RS:NC_002695 LENGTH 5498450 PLASMID pO157; Circular SEQUENCE RS:NC_002128 LENGTH 92721 PLASMID pOSAK1; Circular SEQUENCE RS:NC_002127 LENGTH 3306 STATISTICS Number of nucleotides: 5594477 Number of protein genes: 5317 Number of RNA genes: 141 REFERENCE PMID:11258796 AUTHORS Hayashi T, et al. TITLE Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. JOURNAL DNA Res 8:11-22 (2001) REFERENCE PMID:9628576 AUTHORS Makino K, et al. TITLE Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak. JOURNAL DNA Res 5:1-9 (1998) /// ENTRY T00049 Complete Genome NAME ccr, C.crescentus, CAUCR, 190650 DEFINITION Caulobacter crescentus CB15 ANNOTATION manual TAXONOMY TAX:190650 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR COMMENT Free-living alpha-class proteobacterium CHROMOSOME Circular SEQUENCE RS:NC_002696 LENGTH 4016947 STATISTICS Number of nucleotides: 4016947 Number of protein genes: 3737 Number of RNA genes: 57 REFERENCE PMID:11259647 AUTHORS Nierman WC, et al. TITLE Complete genome sequence of Caulobacter crescentus. JOURNAL Proc Natl Acad Sci U S A 98:4136-41 (2001) /// ENTRY T00050 Complete Genome NAME spy, S.pyogenes, STRP1, 160490 DEFINITION Streptococcus pyogenes SF370 (serotype M1) ANNOTATION manual TAXONOMY TAX:160490 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Oklahoma microgen DISEASE Pharyngitis, cellulitis, scarlet fever, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_002737 LENGTH 1852441 STATISTICS Number of nucleotides: 1852441 Number of protein genes: 1696 Number of RNA genes: 79 REFERENCE PMID:11296296 AUTHORS Ferretti JJ, et al. TITLE Complete genome sequence of an M1 strain of Streptococcus pyogenes. JOURNAL Proc Natl Acad Sci U S A 98:4658-63 (2001) /// ENTRY T00051 Complete Genome NAME sau, S.aureus_N315, STAAN, 158879 DEFINITION Staphylococcus aureus subsp. aureus N315, hospital-acquired meticillin-resistant, vancomycin-susceptible ANNOTATION manual TAXONOMY TAX:158879 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB NITE/Juntendo DISEASE Toxic-shock syndrome and staphylococcal scarlet fever CHROMOSOME Circular SEQUENCE RS:NC_002745 LENGTH 2814816 PLASMID pN315; Circular SEQUENCE RS:NC_003140 LENGTH 24653 STATISTICS Number of nucleotides: 2839469 Number of protein genes: 2614 Number of RNA genes: 79 REFERENCE PMID:11418146 AUTHORS Kuroda M, et al. TITLE Whole genome sequencing of meticillin-resistant Staphylococcus aureus. JOURNAL Lancet 357:1225-40 (2001) /// ENTRY T00052 Complete Genome NAME sav, S.aureus_Mu50, STAAM, 158878 DEFINITION Staphylococcus aureus subsp. aureus Mu50, MRSA strain with vancomycin-intermediate resistance ANNOTATION manual TAXONOMY TAX:158878 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB Juntendo DISEASE Toxic-shock syndrome and staphylococcal scarlet fever CHROMOSOME Circular SEQUENCE RS:NC_002758 LENGTH 2878529 PLASMID VRSAp; Circular SEQUENCE RS:NC_002774 LENGTH 25107 STATISTICS Number of nucleotides: 2903636 Number of protein genes: 2730 Number of RNA genes: 77 REFERENCE PMID:11418146 AUTHORS Kuroda M, et al. TITLE Whole genome sequencing of meticillin-resistant Staphylococcus aureus. JOURNAL Lancet 357:1225-40 (2001) /// ENTRY T00053 Complete Genome NAME mtc, M.tuberculosis_CDC1551, MYCTU, 83331 DEFINITION Mycobacterium tuberculosis CDC1551, clinical strain ANNOTATION manual TAXONOMY TAX:83331 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Tuberculosis CHROMOSOME Circular SEQUENCE RS:NC_002755 LENGTH 4403837 STATISTICS Number of nucleotides: 4403837 Number of protein genes: 4189 Number of RNA genes: 48 REFERENCE PMID:12218036 AUTHORS Fleischmann RD, et al. TITLE Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains. JOURNAL J Bacteriol 184:5479-90 (2002) /// ENTRY T00054 Complete Genome NAME sso, S.solfataricus, SULSO, 273057 DEFINITION Sulfolobus solfataricus P2 ANNOTATION manual TAXONOMY TAX:273057 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB IGM Orsay CHROMOSOME Circular SEQUENCE RS:NC_002754 LENGTH 2992245 STATISTICS Number of nucleotides: 2992245 Number of protein genes: 2977 Number of RNA genes: 56 REFERENCE PMID:11427726 AUTHORS She Q, et al. TITLE The complete genome of the crenarchaeon Sulfolobus solfataricus P2. JOURNAL Proc Natl Acad Sci U S A 98:7835-40 (2001) /// ENTRY T00055 Complete Genome NAME mpu, M.pulmonis, MYCPU, 272635 DEFINITION Mycoplasma pulmonis UAB CTIP ANNOTATION manual TAXONOMY TAX:272635 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB Genoscope Pasteur DISEASE Respiratory mycoplasmosis CHROMOSOME Circular SEQUENCE RS:NC_002771 LENGTH 963879 STATISTICS Number of nucleotides: 963879 Number of protein genes: 782 Number of RNA genes: 33 REFERENCE PMID:11353084 AUTHORS Chambaud I, et al. TITLE The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis. JOURNAL Nucleic Acids Res 29:2145-53 (2001) /// ENTRY T00056 Complete Genome NAME cac, C.acetobutylicum, CLOAB, 272562 DEFINITION Clostridium acetobutylicum ATCC 824 ANNOTATION manual TAXONOMY TAX:272562 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB GTC JCVI-Pathema COMMENT Solvent-producing bacterium CHROMOSOME Circular SEQUENCE RS:NC_003030 LENGTH 3940880 PLASMID pSOL; Circular SEQUENCE RS:NC_001988 LENGTH 192000 STATISTICS Number of nucleotides: 4132880 Number of protein genes: 3848 Number of RNA genes: 106 REFERENCE PMID:11466286 AUTHORS Nolling J, et al. TITLE Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum. JOURNAL J Bacteriol 183:4823-38 (2001) /// ENTRY T00057 Complete Genome NAME spn, S.pneumoniae, STRPN, 170187 DEFINITION Streptococcus pneumoniae TIGR4 (virulent serotype 4) ANNOTATION manual TAXONOMY TAX:170187 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Pneumonia, otitis media CHROMOSOME Circular SEQUENCE RS:NC_003028 LENGTH 2160842 STATISTICS Number of nucleotides: 2160842 Number of protein genes: 2105 Number of RNA genes: 70 REFERENCE PMID:11463916 AUTHORS Tettelin H, et al. TITLE Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. JOURNAL Science 293:498-506 (2001) /// ENTRY T00058 Complete Genome NAME sme, S.meliloti, RHIME, 266834 DEFINITION Sinorhizobium meliloti 1021 ANNOTATION manual TAXONOMY TAX:266834 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium DATA_SOURCE RefSeq ORIGINAL_DB INRA Bielefeld RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_003047 LENGTH 3654135 PLASMID pSymA; Circular SEQUENCE RS:NC_003037 LENGTH 1354226 PLASMID pSymB; Circular SEQUENCE RS:NC_003078 LENGTH 1683333 STATISTICS Number of nucleotides: 6691694 Number of protein genes: 6218 Number of RNA genes: 70 REFERENCE PMID:11474104 (chromosome) AUTHORS Galibert F, et al. TITLE The composite genome of the legume symbiont Sinorhizobium meliloti. JOURNAL Science 293:668-72 (2001) REFERENCE PMID:11481432 (plasmid pSymA) AUTHORS Barnett MJ, et al. TITLE Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid. JOURNAL Proc Natl Acad Sci U S A 98:9883-8 (2001) REFERENCE PMID:11481431 (plasmid pSymB) AUTHORS Finan TM, et al. TITLE The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti. JOURNAL Proc Natl Acad Sci U S A 98:9889-94 (2001) REFERENCE PMID:11481430 AUTHORS Capela D, et al. TITLE Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021. JOURNAL Proc Natl Acad Sci U S A 98:9877-82 (2001) /// ENTRY T00059 Complete Genome NAME atc, A.tumefaciens_C, AGRT5, 176299 DEFINITION Agrobacterium tumefaciens C58 (Cereon) ANNOTATION manual TAXONOMY TAX:176299 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium DATA_SOURCE RefSeq ORIGINAL_DB Cereon DISEASE Crown gall disease in plants COMMENT This record was discontinued by NCBI due to the merge of two datasets (see [GN:atu]). STATISTICS Number of protein genes: 5288 Number of RNA genes: 64 REFERENCE PMID:11743194 AUTHORS Goodner B, et al. TITLE Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58. JOURNAL Science 294:2323-8 (2001) /// ENTRY T00060 Complete Genome NAME spr, S.pneumoniae_R6, STRR6, 171101 DEFINITION Streptococcus pneumoniae R6 (avirulent, laboratory-adapted D39 derivative) ANNOTATION manual TAXONOMY TAX:171101 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Lilly CHROMOSOME Circular SEQUENCE RS:NC_003098 LENGTH 2038615 STATISTICS Number of nucleotides: 2038615 Number of protein genes: 2042 Number of RNA genes: 73 REFERENCE PMID:11544234 AUTHORS Hoskins J, et al. TITLE Genome of the bacterium Streptococcus pneumoniae strain R6. JOURNAL J Bacteriol 183:5709-17 (2001) /// ENTRY T00061 Complete Genome NAME rco, R.conorii, RICCN, 272944 DEFINITION Rickettsia conorii Malish 7 ANNOTATION manual TAXONOMY TAX:272944 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group DATA_SOURCE RefSeq ORIGINAL_DB CNRS Marseille Genoscope DISEASE Mediterranean spotted fever CHROMOSOME Circular SEQUENCE RS:NC_003103 LENGTH 1268755 STATISTICS Number of nucleotides: 1268755 Number of protein genes: 1374 Number of RNA genes: 38 REFERENCE PMID:11557893 AUTHORS Ogata H, et al. TITLE Mechanisms of evolution in Rickettsia conorii and R. prowazekii. JOURNAL Science 293:2093-8 (2001) /// ENTRY T00062 Complete Genome NAME sto, S.tokodaii, SULTO, 273063 DEFINITION Sulfolobus tokodaii strain7 ANNOTATION manual TAXONOMY TAX:273063 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME Circular SEQUENCE RS:NC_003106 LENGTH 2694756 STATISTICS Number of nucleotides: 2694756 Number of protein genes: 2825 Number of RNA genes: 49 REFERENCE PMID:11572479 AUTHORS Kawarabayasi Y, et al. TITLE Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7. JOURNAL DNA Res 8:123-40 (2001) /// ENTRY T00063 Complete Genome NAME ype, Y.pestis, YERPE, 214092 DEFINITION Yersinia pestis CO92 (biovar Orientalis) ANNOTATION manual TAXONOMY TAX:214092 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Plague CHROMOSOME Circular SEQUENCE RS:NC_003143 LENGTH 4653728 PLASMID pPCP1; Circular SEQUENCE RS:NC_003132 LENGTH 9612 PLASMID pCD1; Circular SEQUENCE RS:NC_003131 LENGTH 70305 PLASMID pMT1; Circular SEQUENCE RS:NC_003134 LENGTH 96210 STATISTICS Number of nucleotides: 4829855 Number of protein genes: 4066 Number of RNA genes: 97 REFERENCE PMID:11586360 AUTHORS Parkhill J, et al. TITLE Genome sequence of Yersinia pestis, the causative agent of plague. JOURNAL Nature 413:523-7 (2001) /// ENTRY T00064 Complete Genome NAME sty, S.typhi, SALTI, 220341 DEFINITION Salmonella enterica subsp. enterica serovar Typhi CT18 (Salmonella typhi CT18) ANNOTATION manual TAXONOMY TAX:220341 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Typhi DATA_SOURCE RefSeq ORIGINAL_DB GeneDB Sanger DISEASE Typhoid fever CHROMOSOME Circular SEQUENCE RS:NC_003198 LENGTH 4809037 PLASMID pHCM1; Circular SEQUENCE RS:NC_003384 LENGTH 218160 PLASMID pHCM2; Circular SEQUENCE RS:NC_003385 LENGTH 106516 STATISTICS Number of nucleotides: 5133713 Number of protein genes: 4754 Number of RNA genes: 112 REFERENCE PMID:11677608 AUTHORS Parkhill J, et al. TITLE Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. JOURNAL Nature 413:848-52 (2001) /// ENTRY T00065 Complete Genome NAME stm, S.typhimurium, SALTY, 99287 DEFINITION Salmonella enterica subsp. enterica serovar Typhimurium LT2 (Salmonella typhimurium LT2) ANNOTATION manual TAXONOMY TAX:99287 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Typhimurium DATA_SOURCE RefSeq ORIGINAL_DB Washington U DISEASE Gastroenteritis and food poisoning CHROMOSOME Circular SEQUENCE RS:NC_003197 LENGTH 4857432 PLASMID pSLT; Circular SEQUENCE RS:NC_003277 LENGTH 93939 STATISTICS Number of nucleotides: 4951371 Number of protein genes: 4525 Number of RNA genes: 119 REFERENCE PMID:11677609 AUTHORS McClelland M, et al. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. JOURNAL Nature 413:852-6 (2001) /// ENTRY T00066 Complete Genome NAME lmo, L.monocytogenes, LISMO, 169963 DEFINITION Listeria monocytogenes EGD-e (serotype 1/2a) ANNOTATION manual TAXONOMY TAX:169963 LINEAGE Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria DATA_SOURCE RefSeq ORIGINAL_DB Pasteur DISEASE Listeriosis CHROMOSOME Circular SEQUENCE RS:NC_003210 LENGTH 2944528 STATISTICS Number of nucleotides: 2944528 Number of protein genes: 2846 Number of RNA genes: 85 REFERENCE PMID:11679669 AUTHORS Glaser P, et al. TITLE Comparative genomics of Listeria species. JOURNAL Science 294:849-52 (2001) /// ENTRY T00067 Complete Genome NAME lin, L.innocua, LISIN, 272626 DEFINITION Listeria innocua CLIP 11262 (serotype 6a) ANNOTATION manual TAXONOMY TAX:272626 LINEAGE Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria DATA_SOURCE RefSeq ORIGINAL_DB Pasteur COMMENT Nonpathogenic Listeria species CHROMOSOME Circular SEQUENCE RS:NC_003212 LENGTH 3011208 PLASMID pLI100 SEQUENCE RS:NC_003383 LENGTH 81905 STATISTICS Number of nucleotides: 3093113 Number of protein genes: 3043 Number of RNA genes: 84 REFERENCE PMID:11679669 AUTHORS Glaser P, et al. TITLE Comparative genomics of Listeria species. JOURNAL Science 294:849-52 (2001) /// ENTRY T00068 Complete Genome NAME ecj, E.coli_J, ECOLI, 316407 DEFINITION Escherichia coli K-12 W3110 ANNOTATION manual TAXONOMY TAX:316407 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Nara CHROMOSOME Circular SEQUENCE RS:AC_000091 LENGTH 4646332 STATISTICS Number of nucleotides: 4646332 Number of protein genes: 4226 Number of RNA genes: 157 REFERENCE PMID:16738553 AUTHORS Hayashi K, et al. TITLE Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. JOURNAL Mol Syst Biol 2:2006.0007 (2006) /// ENTRY T00069 Complete Genome NAME ana, Anabaena, ANASP, 103690 DEFINITION Anabaena sp. PCC 7120 (Nostoc sp. PCC 7120) ANNOTATION manual TAXONOMY TAX:103690 LINEAGE Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc DATA_SOURCE RefSeq ORIGINAL_DB CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_003272 LENGTH 6413771 PLASMID pCC7120alpha; Circular SEQUENCE RS:NC_003276 LENGTH 408101 PLASMID pCC7120beta; Circular SEQUENCE RS:NC_003240 LENGTH 186614 PLASMID pCC7120gamma; Circular SEQUENCE RS:NC_003267 LENGTH 101965 PLASMID pCC7120delta; Circular SEQUENCE RS:NC_003273 LENGTH 55414 PLASMID pCC7120epsilon; Circular SEQUENCE RS:NC_003270 LENGTH 40340 PLASMID pCC7120zeta; Circular SEQUENCE RS:NC_003241 LENGTH 5584 STATISTICS Number of nucleotides: 7211789 Number of protein genes: 6129 Number of RNA genes: 83 REFERENCE PMID:11759840 AUTHORS Kaneko T, et al. TITLE Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. JOURNAL DNA Res 8:205-13 (2001) /// ENTRY T00070 Complete Genome NAME atu, A.tumefaciens, AGRT5, 176299 DEFINITION Agrobacterium tumefaciens C58 ANNOTATION manual TAXONOMY TAX:176299 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium DATA_SOURCE RefSeq ORIGINAL_DB UWash DISEASE Crown gall disease in plants COMMENT Originally called Agrobacterium tumefaciens C58 (U.Washington/Dupont) to distinguish from Agrobacterium tumefaciens C58 (Cereon) [GN:atc] CHROMOSOME Circular SEQUENCE RS:NC_003062 LENGTH 2841580 CHROMOSOME L (linear chromosome) SEQUENCE RS:NC_003063 LENGTH 2075577 PLASMID Ti; Circular SEQUENCE RS:NC_003065 LENGTH 214233 PLASMID AT; Circular SEQUENCE RS:NC_003064 LENGTH 542868 STATISTICS Number of nucleotides: 5674258 Number of protein genes: 5355 Number of RNA genes: 74 REFERENCE PMID:11743193 AUTHORS Wood DW, et al. TITLE The genome of the natural genetic engineer Agrobacterium tumefaciens C58. JOURNAL Science 294:2317-23 (2001) /// ENTRY T00071 Complete Genome NAME rso, R.solanacearum, RALSO, 267608 DEFINITION Ralstonia solanacearum GMI1000 ANNOTATION manual TAXONOMY TAX:267608 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope INRA JCVI-Pathema DISEASE Plant rot CHROMOSOME Circular SEQUENCE RS:NC_003295 LENGTH 3716413 PLASMID pGMI1000MP; Circular SEQUENCE RS:NC_003296 LENGTH 2094509 STATISTICS Number of nucleotides: 5810922 Number of protein genes: 5113 Number of RNA genes: 70 REFERENCE PMID:11823852 AUTHORS Salanoubat M, et al. TITLE Genome sequence of the plant pathogen Ralstonia solanacearum. JOURNAL Nature 415:497-502 (2002) /// ENTRY T00072 Complete Genome NAME bme, B.melitensis, BRUME, 224914 DEFINITION Brucella melitensis 16M ANNOTATION manual TAXONOMY TAX:224914 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB U.Scranton DISEASE Brucellosis CHROMOSOME I; Circular SEQUENCE RS:NC_003317 LENGTH 2117144 CHROMOSOME II; Circular SEQUENCE RS:NC_003318 LENGTH 1177787 STATISTICS Number of nucleotides: 3294931 Number of protein genes: 3198 Number of RNA genes: 66 REFERENCE PMID:11756688 AUTHORS DelVecchio VG, et al. TITLE The genome sequence of the facultative intracellular pathogen Brucella melitensis. JOURNAL Proc Natl Acad Sci U S A 99:443-448 (2002) /// ENTRY T00073 Complete Genome NAME pai, P.aerophilum, PYRAE, 178306 DEFINITION Pyrobaculum aerophilum IM2 ANNOTATION manual TAXONOMY TAX:178306 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum DATA_SOURCE RefSeq ORIGINAL_DB UCLA CHROMOSOME Circular SEQUENCE RS:NC_003364 LENGTH 2222430 STATISTICS Number of nucleotides: 2222430 Number of protein genes: 2603 Number of RNA genes: 96 REFERENCE PMID:11792869 AUTHORS Fitz-Gibbon ST, et al. TITLE Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum. JOURNAL Proc Natl Acad Sci U S A 99:984-9 (2002) /// ENTRY T00074 Complete Genome NAME cpe, C.perfringens, CLOPE, 195102 DEFINITION Clostridium perfringens 13 ANNOTATION manual TAXONOMY TAX:195102 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Kyushu U JCVI-Pathema DISEASE Gas gangrene, mild enterotoxemia CHROMOSOME Circular SEQUENCE RS:NC_003366 LENGTH 3031430 PLASMID pCP13; Circular SEQUENCE RS:NC_003042 LENGTH 54310 STATISTICS Number of nucleotides: 3085740 Number of protein genes: 2723 Number of RNA genes: 126 REFERENCE PMID:11792842 AUTHORS Shimizu T, et al. TITLE Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater. JOURNAL Proc Natl Acad Sci U S A 99:996-1001 (2002) /// ENTRY T00075 Complete Genome NAME pfu, P.furiosus, PYRFU, 186497 DEFINITION Pyrococcus furiosus DSM 3638 ANNOTATION manual TAXONOMY TAX:186497 LINEAGE Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus DATA_SOURCE RefSeq ORIGINAL_DB U.Utah CHROMOSOME Circular SEQUENCE RS:NC_003413 LENGTH 1908256 STATISTICS Number of nucleotides: 1908256 Number of protein genes: 2125 Number of RNA genes: 103 REFERENCE PMID:10430560 AUTHORS Maeder DL, et al. TITLE Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences. JOURNAL Genetics 152:1299-305 (1999) REFERENCE PMID:11115105 AUTHORS Diruggiero J, et al. TITLE Evidence of recent lateral gene transfer among hyperthermophilic archaea. JOURNAL Mol Microbiol 38:684-93 (2000) REFERENCE PMID:11210495 AUTHORS Robb FT, et al. TITLE Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology. JOURNAL Methods Enzymol 330:134-57 (2001) /// ENTRY T00076 Complete Genome NAME spo, S.pombe, SCHPO, 284812 DEFINITION Schizosaccharomyces pombe 972h- ANNOTATION manual TAXONOMY TAX:284812 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces DATA_SOURCE RefSeq ORIGINAL_DB Sanger CSHL STATISTICS Number of protein genes: 5003 Number of RNA genes: 28 REFERENCE PMID:11859360 AUTHORS Wood V, et al. TITLE The genome sequence of Schizosaccharomyces pombe. JOURNAL Nature 415:871-80 (2002) /// ENTRY T00077 Complete Genome NAME fnu, F.nucleatum, FUSNU, 190304 DEFINITION Fusobacterium nucleatum ATCC 25586 ANNOTATION manual TAXONOMY TAX:190304 LINEAGE Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium DATA_SOURCE RefSeq ORIGINAL_DB IG COMMENT Microflora of the mouth in healthy or diseased humans CHROMOSOME Circular SEQUENCE RS:NC_003454 LENGTH 2174500 STATISTICS Number of nucleotides: 2174500 Number of protein genes: 2063 Number of RNA genes: 62 REFERENCE PMID:11889109 AUTHORS Kapatral V, et al. TITLE Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586. JOURNAL J Bacteriol 184:2005-18 (2002) /// ENTRY T00078 Complete Genome NAME mka, M.kandleri, METKA, 190192 DEFINITION Methanopyrus kandleri AV19 ANNOTATION manual TAXONOMY TAX:190192 LINEAGE Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus DATA_SOURCE RefSeq ORIGINAL_DB Fidelity Systems CHROMOSOME Circular SEQUENCE RS:NC_003551 LENGTH 1694969 STATISTICS Number of nucleotides: 1694969 Number of protein genes: 1687 Number of RNA genes: 38 REFERENCE PMID:11930014 AUTHORS Slesarev AI, et al. TITLE The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens. JOURNAL Proc Natl Acad Sci U S A 99:4644-9 (2002) /// ENTRY T00079 Complete Genome NAME spm, S.pyogenes_M18, STRP8, 186103 DEFINITION Streptococcus pyogenes MGAS8232 (serotype M18) ANNOTATION manual TAXONOMY TAX:186103 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NIAID,NIH DISEASE Pharyngitis, cellulitis, scarlet fever, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_003485 LENGTH 1895017 STATISTICS Number of nucleotides: 1895017 Number of protein genes: 1839 Number of RNA genes: 85 REFERENCE PMID:11917108 AUTHORS Smoot JC, et al. TITLE Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks. JOURNAL Proc Natl Acad Sci U S A 99:4668-73 (2002) /// ENTRY T00080 Complete Genome NAME mac, M.acetivorans, METAC, 188937 DEFINITION Methanosarcina acetivorans C2A ANNOTATION manual TAXONOMY TAX:188937 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina DATA_SOURCE RefSeq ORIGINAL_DB BROAD CHROMOSOME Circular SEQUENCE RS:NC_003552 LENGTH 5751492 STATISTICS Number of nucleotides: 5751492 Number of protein genes: 4540 Number of RNA genes: 69 REFERENCE PMID:11932238 AUTHORS Galagan JE, et al. TITLE The genome of M. acetivorans reveals extensive metabolic and physiological diversity. JOURNAL Genome Res 12:532-42 (2002) /// ENTRY T00081 Complete Genome NAME tte, T.tengcongensis, THETN, 273068 DEFINITION Thermoanaerobacter tengcongensis MB4(T) ANNOTATION manual TAXONOMY TAX:273068 LINEAGE Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter DATA_SOURCE RefSeq ORIGINAL_DB Beijing CHROMOSOME Circular SEQUENCE RS:NC_003869 LENGTH 2689445 STATISTICS Number of nucleotides: 2689445 Number of protein genes: 2588 Number of RNA genes: 68 REFERENCE PMID:11997336 AUTHORS Bao Q, et al. TITLE A complete sequence of the T. tengcongensis genome. JOURNAL Genome Res 12:689-700 (2002) /// ENTRY T00082 Complete Genome NAME mma, M.mazei, METMA, 192952 DEFINITION Methanosarcina mazei Goe1 ANNOTATION manual TAXONOMY TAX:192952 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina DATA_SOURCE RefSeq ORIGINAL_DB Goettingen CHROMOSOME Circular SEQUENCE RS:NC_003901 LENGTH 4096345 STATISTICS Number of nucleotides: 4096345 Number of protein genes: 3368 Number of RNA genes: 66 REFERENCE PMID:12125824 AUTHORS Deppenmeier U, et al. TITLE The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea. JOURNAL J Mol Microbiol Biotechnol 4:453-61 (2002) /// ENTRY T00083 Complete Genome NAME xcc, X.campestris, XANCP, 190485 DEFINITION Xanthomonas campestris pv. campestris ATCC 33913 ANNOTATION manual TAXONOMY TAX:190485 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas DATA_SOURCE RefSeq ORIGINAL_DB Sao Paulo DISEASE Crucifer black rot disease CHROMOSOME Circular SEQUENCE RS:NC_003902 LENGTH 5076188 STATISTICS Number of nucleotides: 5076188 Number of protein genes: 4179 Number of RNA genes: 61 REFERENCE PMID:12024217 AUTHORS da Silva AC, et al. TITLE Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. JOURNAL Nature 417:459-63 (2002) /// ENTRY T00084 Complete Genome NAME xac, X.axonopodis, XANAC, 190486 DEFINITION Xanthomonas axonopodis pv. citri 306 ANNOTATION manual TAXONOMY TAX:190486 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas DATA_SOURCE RefSeq ORIGINAL_DB Sao Paulo DISEASE Citrus canker CHROMOSOME Circular SEQUENCE RS:NC_003919 LENGTH 5175554 PLASMID pXAC33; Circular SEQUENCE RS:NC_003921 LENGTH 33700 PLASMID pXAC64; Circular SEQUENCE RS:NC_003922 LENGTH 64920 STATISTICS Number of nucleotides: 5274174 Number of protein genes: 4427 Number of RNA genes: 61 REFERENCE PMID:12024217 AUTHORS da Silva AC, et al. TITLE Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. JOURNAL Nature 417:459-63 (2002) /// ENTRY T00085 Complete Genome NAME sco, S.coelicolor, STRCO, 100226 DEFINITION Streptomyces coelicolor A3(2) ANNOTATION manual TAXONOMY TAX:100226 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces DATA_SOURCE RefSeq ORIGINAL_DB Sanger GeneDB Kitasato COMMENT Saprophytic bacteria producing most natural antibiotics CHROMOSOME (linear chromosome) SEQUENCE RS:NC_003888 LENGTH 8667507 PLASMID SCP1 SEQUENCE RS:NC_003903 LENGTH 356023 PLASMID SCP2; Circular SEQUENCE RS:NC_003904 LENGTH 31317 STATISTICS Number of nucleotides: 9054847 Number of protein genes: 8153 Number of RNA genes: 86 REFERENCE PMID:12000953 AUTHORS Bentley SD, et al. TITLE Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). JOURNAL Nature 417:141-7 (2002) /// ENTRY T00086 Complete Genome NAME sam, S.aureus_MW2, STAAW, 196620 DEFINITION Staphylococcus aureus subsp. aureus MW2, community-acquired MRSA ANNOTATION manual TAXONOMY TAX:196620 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB NITE/Juntendo DISEASE Toxic-shock syndrome and staphylococcal scarlet fever COMMENT High virulence community-acquired strain of MRSA CHROMOSOME Circular SEQUENCE RS:NC_003923 LENGTH 2820462 STATISTICS Number of nucleotides: 2820462 Number of protein genes: 2624 Number of RNA genes: 80 REFERENCE PMID:12044378 AUTHORS Baba T, et al. TITLE Genome and virulence determinants of high virulence community- acquired MRSA. JOURNAL Lancet 359:1819-27 (2002) /// ENTRY T00087 Complete Genome NAME bas, B.aphidicola_Sg, BUCAP, 198804 DEFINITION Buchnera aphidicola Sg, endosymbiont of Schizaphis graminum (greenbug) ANNOTATION manual TAXONOMY TAX:198804 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera DATA_SOURCE RefSeq ORIGINAL_DB Uppsala CHROMOSOME Circular SEQUENCE RS:NC_004061 LENGTH 641454 STATISTICS Number of nucleotides: 641454 Number of protein genes: 546 Number of RNA genes: 37 REFERENCE PMID:12089438 AUTHORS Tamas I, et al. TITLE 50 million years of genomic stasis in endosymbiotic bacteria. JOURNAL Science 296:2376-9 (2002) /// ENTRY T00088 Complete Genome NAME cte, C.tepidum, CHLTE, 194439 DEFINITION Chlorobaculum tepidum TLS ANNOTATION manual TAXONOMY TAX:194439 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CyanoBase CYORF COMMENT Photosynthetic green-sulfur bacterium CHROMOSOME Circular SEQUENCE RS:NC_002932 LENGTH 2154946 STATISTICS Number of nucleotides: 2154946 Number of protein genes: 2245 Number of RNA genes: 56 REFERENCE PMID:12093901 AUTHORS Eisen JA, et al. TITLE The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. JOURNAL Proc Natl Acad Sci U S A 99:9509-14 (2002) /// ENTRY T00089 Complete Genome NAME spg, S.pyogenes_M3, STRP3, 198466 DEFINITION Streptococcus pyogenes MGAS315 (serotype M3) ANNOTATION manual TAXONOMY TAX:198466 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NIAID,NIH DISEASE Pharyngitis, cellulitis, scarlet fever, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_004070 LENGTH 1900521 STATISTICS Number of nucleotides: 1900521 Number of protein genes: 1865 Number of RNA genes: 85 REFERENCE PMID:12122206 AUTHORS Beres SB, et al. TITLE Genome sequence of a serotype M3 strain of group A Streptococcus: Phage-encoded toxins, the high- virulence phenotype, and clone emergence. JOURNAL Proc Natl Acad Sci U S A 99:10078-83 (2002) /// ENTRY T00090 Complete Genome NAME tel, T.elongatus, SYNEL, 197221 DEFINITION Thermosynechococcus elongatus BP-1 ANNOTATION manual TAXONOMY TAX:197221 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Thermosynechococcus DATA_SOURCE RefSeq ORIGINAL_DB CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_004113 LENGTH 2593857 STATISTICS Number of nucleotides: 2593857 Number of protein genes: 2476 Number of RNA genes: 49 REFERENCE PMID:12240834 AUTHORS Nakamura Y, et al. TITLE Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. JOURNAL DNA Res 9:123-30 (2002) /// ENTRY T00091 Complete Genome NAME sag, S.agalactiae, STRA5, 208435 DEFINITION Streptococcus agalactiae 2603 (serotype V) ANNOTATION manual TAXONOMY TAX:208435 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Septicemia, pneumonia, and meningitis CHROMOSOME Circular SEQUENCE RS:NC_004116 LENGTH 2160267 STATISTICS Number of nucleotides: 2160267 Number of protein genes: 2124 Number of RNA genes: 101 REFERENCE PMID:12200547 AUTHORS Tettelin H, et al. TITLE Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae. JOURNAL Proc Natl Acad Sci U S A 99:12391-6 (2002) /// ENTRY T00092 Complete Genome NAME ypk, Y.pestis_KIM, YERPE, 187410 DEFINITION Yersinia pestis KIM (biovar Mediaevalis) ANNOTATION manual TAXONOMY TAX:187410 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB Wisconsin DISEASE Plague CHROMOSOME Circular SEQUENCE RS:NC_004088 LENGTH 4600755 PLASMID pMT-1; Circular SEQUENCE RS:NC_004838 LENGTH 100990 STATISTICS Number of nucleotides: 4701745 Number of protein genes: 4164 Number of RNA genes: 100 REFERENCE PMID:12142430 AUTHORS Deng W, et al. TITLE Genome sequence of Yersinia pestis KIM. JOURNAL J Bacteriol 184:4601-11 (2002) /// ENTRY T00093 Complete Genome NAME oih, O.iheyensis, OCEIH, 221109 DEFINITION Oceanobacillus iheyensis HTE831 ANNOTATION manual TAXONOMY TAX:221109 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Oceanobacillus DATA_SOURCE RefSeq ORIGINAL_DB JAMSTEC CHROMOSOME Circular SEQUENCE RS:NC_004193 LENGTH 3630528 STATISTICS Number of nucleotides: 3630528 Number of protein genes: 3500 Number of RNA genes: 92 REFERENCE PMID:12235376 AUTHORS Takami H, et al. TITLE Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments. JOURNAL Nucleic Acids Res 30:3927-35 (2002) /// ENTRY T00094 Complete Genome NAME blo, B.longum, BIFLO, 206672 DEFINITION Bifidobacterium longum NCC2705 ANNOTATION manual TAXONOMY TAX:206672 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium DATA_SOURCE RefSeq ORIGINAL_DB Nestle COMMENT Human commensals that promote a healthy gastrointestinal tract CHROMOSOME Circular SEQUENCE RS:NC_004307 LENGTH 2256640 PLASMID pBLO1; Circular SEQUENCE RS:NC_004943 LENGTH 3626 STATISTICS Number of nucleotides: 2260266 Number of protein genes: 1729 Number of RNA genes: 70 REFERENCE PMID:12381787 AUTHORS Schell MA, et al. TITLE The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. JOURNAL Proc Natl Acad Sci U S A 99:14422-7 (2002) /// ENTRY T00095 Complete Genome NAME pfa, P.falciparum, PLAF7, 36329 DEFINITION Plasmodium falciparum 3D7 ANNOTATION manual TAXONOMY TAX:36329 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Laverania) DATA_SOURCE RefSeq ORIGINAL_DB PlasmoDB Sanger Stanford U DISEASE Malaria STATISTICS Number of protein genes: 5263 REFERENCE PMID:12368864 AUTHORS Gardner MJ, et al. TITLE Genome sequence of the human malaria parasite Plasmodium falciparum. JOURNAL Nature 419:498-511 (2002) REFERENCE PMID:12368867 (chromosomes 1, 3-9 and 13) AUTHORS Hall N, et al. TITLE Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. JOURNAL Nature 419:527-31 (2002) REFERENCE PMID:12368868 (chromosomes 2, 10, 11 and 14) AUTHORS Gardner MJ, et al. TITLE Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. JOURNAL Nature 419:531-4 (2002) REFERENCE PMID:12368869 (chromosome 12) AUTHORS Hyman RW, et al. TITLE Sequence of Plasmodium falciparum chromosome 12. JOURNAL Nature 419:534-7 (2002) REFERENCE PMID:10448855 (chromosome 3) AUTHORS Bowman S, et al. TITLE The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum. JOURNAL Nature 400:532-8 (1999) REFERENCE PMID:9804551 (chromosome 2) AUTHORS Gardner MJ, et al. TITLE Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum. JOURNAL Science 282:1126-32 (1998) /// ENTRY T00096 Complete Genome NAME bms, B.suis, BRUSU, 204722 DEFINITION Brucella suis 1330 ANNOTATION manual TAXONOMY TAX:204722 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Brucellosis, infectious abortions, systemic febrile illness COMMENT First bioweapon of US military CHROMOSOME I; Circular SEQUENCE RS:NC_004310 LENGTH 2107794 CHROMOSOME II; Circular SEQUENCE RS:NC_004311 LENGTH 1207381 STATISTICS Number of nucleotides: 3315175 Number of protein genes: 3271 Number of RNA genes: 64 REFERENCE PMID:12271122 AUTHORS Paulsen IT, et al. TITLE The Brucellasuis genome reveals fundamental similarities between animal and plant pathogens and symbionts. JOURNAL Proc Natl Acad Sci U S A 99:13148-53 (2002) /// ENTRY T00097 Complete Genome NAME sfl, S.flexneri, SHIFL, 198214 DEFINITION Shigella flexneri 301 (serotype 2a) ANNOTATION manual TAXONOMY TAX:198214 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella DATA_SOURCE RefSeq ORIGINAL_DB Beijing ShiBASE_China DISEASE Dysentery CHROMOSOME Circular SEQUENCE RS:NC_004337 LENGTH 4607203 PLASMID pCP301; Circular SEQUENCE RS:NC_004851 LENGTH 221618 STATISTICS Number of nucleotides: 4828821 Number of protein genes: 4439 Number of RNA genes: 129 REFERENCE PMID:12384590 AUTHORS Jin Q, et al. TITLE Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157. JOURNAL Nucleic Acids Res 30:4432-4441 (2002) /// ENTRY T00098 Complete Genome NAME lil, L.interrogans, LEPIN, 189518 DEFINITION Leptospira interrogans serovar Lai 56601 ANNOTATION manual TAXONOMY TAX:189518 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira DATA_SOURCE RefSeq ORIGINAL_DB U. Hong Kong DISEASE Leptospirosis CHROMOSOME I; Circular SEQUENCE RS:NC_004342 LENGTH 4338762 CHROMOSOME II; Circular SEQUENCE RS:NC_004343 LENGTH 359372 STATISTICS Number of nucleotides: 4698134 Number of protein genes: 4724 Number of RNA genes: 41 REFERENCE PMID:12712204 AUTHORS Ren SX, et al. TITLE Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing. JOURNAL Nature 422:888-893 (2003) /// ENTRY T00099 Complete Genome NAME son, S.oneidensis, SHEON, 211586 DEFINITION Shewanella oneidensis MR-1 ANNOTATION manual TAXONOMY TAX:211586 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR COMMENT Facultatively aerobic Gram-negative bacterium with diverse respiratory capacities; model organism for bioremediation studies CHROMOSOME Circular SEQUENCE RS:NC_004347 LENGTH 4969803 PLASMID pMR-1 (megaplasmid); Circular SEQUENCE RS:NC_004349 LENGTH 161613 STATISTICS Number of nucleotides: 5131416 Number of protein genes: 4467 Number of RNA genes: 130 REFERENCE PMID:12368813 AUTHORS Heidelberg JF, et al. TITLE Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. JOURNAL Nat Biotechnol 20:1118-23 (2002) /// ENTRY T00100 Complete Genome NAME smu, S.mutans, STRMU, 210007 DEFINITION Streptococcus mutans UA159 (serotype C) ANNOTATION manual TAXONOMY TAX:210007 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Oklahoma DISEASE Dental caries CHROMOSOME Circular SEQUENCE RS:NC_004350 LENGTH 2030921 STATISTICS Number of nucleotides: 2030921 Number of protein genes: 1960 Number of RNA genes: 80 REFERENCE PMID:12397186 AUTHORS Ajdic D, et al. TITLE Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen. JOURNAL Proc Natl Acad Sci U S A 99:14434-9 (2002) /// ENTRY T00101 Complete Genome NAME wbr, W.brevipalpis, WIGBR, 36870 DEFINITION Wigglesworthia glossinidia (Wigglesworthia brevipalpis), endosymbiont of Glossina brevipalpis (tsetse fly) ANNOTATION manual TAXONOMY TAX:36870 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Wigglesworthia DATA_SOURCE RefSeq ORIGINAL_DB Kitasato Yale CHROMOSOME Circular SEQUENCE RS:NC_004344 LENGTH 697724 PLASMID pWb1; Circular SEQUENCE RS:NC_003425 LENGTH 5280 STATISTICS Number of nucleotides: 703004 Number of protein genes: 617 Number of RNA genes: 40 REFERENCE PMID:12219091 AUTHORS Akman L, et al. TITLE Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia. JOURNAL Nat Genet 32:402-7 (2002) /// ENTRY T00102 Complete Genome NAME cgl, C.glutamicum, CORGL, 196627 DEFINITION Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) ANNOTATION manual TAXONOMY TAX:196627 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium DATA_SOURCE RefSeq ORIGINAL_DB Kyowa Hakko CHROMOSOME Circular SEQUENCE RS:NC_003450 LENGTH 3309401 STATISTICS Number of nucleotides: 3309401 Number of protein genes: 2993 Number of RNA genes: 80 REFERENCE PMID:12743753 AUTHORS Ikeda M, Nakagawa S. TITLE The Corynebacterium glutamicum genome: features and impacts on biotechnological processes. JOURNAL Appl Microbiol Biotechnol 62:99-109 (2003) /// ENTRY T00103 Complete Genome NAME cef, C.efficiens, COREF, 196164 DEFINITION Corynebacterium efficiens YS-314 ANNOTATION manual TAXONOMY TAX:196164 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium DATA_SOURCE RefSeq ORIGINAL_DB NITE COMMENT Well-known bacteria in industry for the production of amino acids, e.g. of L-glutamate and L-lysine CHROMOSOME Circular SEQUENCE RS:NC_004369 LENGTH 3147090 PLASMID pCE2; Circular SEQUENCE RS:NC_004319 LENGTH 23743 PLASMID pCE3; Circular SEQUENCE RS:NC_004320 LENGTH 48672 STATISTICS Number of nucleotides: 3219505 Number of protein genes: 2994 Number of RNA genes: 70 REFERENCE PMID:12840036 AUTHORS Nishio Y, et al. TITLE Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens. JOURNAL Genome Res 13:1572-9 (2003) /// ENTRY T00104 Complete Genome NAME san, S.agalactiae_NEM316, STRA3, 211110 DEFINITION Streptococcus agalactiae NEM316 (serotype III) ANNOTATION manual TAXONOMY TAX:211110 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Pasteur DISEASE Septicemia, pneumonia, and meningitis CHROMOSOME Circular SEQUENCE RS:NC_004368 LENGTH 2211485 STATISTICS Number of nucleotides: 2211485 Number of protein genes: 2094 Number of RNA genes: 101 REFERENCE PMID:12354221 AUTHORS Glaser P, et al. TITLE Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease. JOURNAL Mol Microbiol 45:1499-513 (2002) /// ENTRY T00105 Complete Genome NAME ecu, E.cuniculi, ENCCU, 284813 DEFINITION Encephalitozoon cuniculi GB-M1 ANNOTATION manual TAXONOMY TAX:284813 LINEAGE Eukaryota; Fungi; Microsporidia; Unikaryonidae; Encephalitozoon DATA_SOURCE RefSeq ORIGINAL_DB Genoscope DISEASE Digestive and nervous clinical syndromes in immunocompromised individuals STATISTICS Number of protein genes: 1996 REFERENCE PMID:11719806 AUTHORS Katinka MD, et al. TITLE Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. JOURNAL Nature 414:450-3 (2001) /// ENTRY T00106 Complete Genome NAME ecc, E.coli_CFT073, ECOLX, 199310 DEFINITION Escherichia coli O6:H1 CFT073 (UPEC) ANNOTATION manual TAXONOMY TAX:199310 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Wisconsin DISEASE Urinary tract infections CHROMOSOME Circular SEQUENCE RS:NC_004431 LENGTH 5231428 STATISTICS Number of nucleotides: 5231428 Number of protein genes: 5338 Number of RNA genes: 116 REFERENCE PMID:12471157 AUTHORS Welch RA, et al. TITLE Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. JOURNAL Proc Natl Acad Sci U S A 99:17020-4 (2002) /// ENTRY T00107 Complete Genome NAME mpe, M.penetrans, MYCPE, 272633 DEFINITION Mycoplasma penetrans HF-2 ANNOTATION manual TAXONOMY TAX:272633 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB NIH Japan DISEASE Urogenital or respiratory tract infections CHROMOSOME Circular SEQUENCE RS:NC_004432 LENGTH 1358633 STATISTICS Number of nucleotides: 1358633 Number of protein genes: 1037 Number of RNA genes: 32 REFERENCE PMID:12466555 AUTHORS Sasaki Y, et al. TITLE The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans. JOURNAL Nucleic Acids Res 30:5293-300 (2002) /// ENTRY T00108 Complete Genome NAME vvu, V.vulnificus, VIBVU, 216895 DEFINITION Vibrio vulnificus CMCP6 ANNOTATION manual TAXONOMY TAX:216895 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB Chonnam Korea DISEASE Gastroenteritis, wound infections, primary septicemia CHROMOSOME I; Circular SEQUENCE RS:NC_004459 LENGTH 3281944 CHROMOSOME II; Circular SEQUENCE RS:NC_004460 LENGTH 1844853 STATISTICS Number of nucleotides: 5126797 Number of protein genes: 4472 Number of RNA genes: 139 REFERENCE PMID:14500463 AUTHORS Kim YR, et al. TITLE Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients. JOURNAL Infect Immun 71:5461-71 (2003) /// ENTRY T00109 Complete Genome NAME bja, B.japonicum, BRAJA, 224911 DEFINITION Bradyrhizobium japonicum USDA110 ANNOTATION manual TAXONOMY TAX:224911 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium DATA_SOURCE RefSeq ORIGINAL_DB RhizoBase COMMENT Nitrogen-fixing symbiotic bacterium CHROMOSOME Circular SEQUENCE RS:NC_004463 LENGTH 9105828 STATISTICS Number of nucleotides: 9105828 Number of protein genes: 8317 Number of RNA genes: 56 REFERENCE PMID:12597275 AUTHORS Kaneko T, et al. TITLE Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. JOURNAL DNA Res 9:189-97 (2002) /// ENTRY T00110 Complete Genome NAME sep, S.epidermidis, STAES, 176280 DEFINITION Staphylococcus epidermidis ATCC 12228 ANNOTATION manual TAXONOMY TAX:176280 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB CHGC Shanghai COMMENT Non-biofilm forming, non-infection associated strain used for detection of residual antibiotics in food products CHROMOSOME Circular SEQUENCE RS:NC_004461 LENGTH 2499279 PLASMID pSE-12228-01; Circular SEQUENCE RS:NC_005008 LENGTH 4439 PLASMID pSE-12228-02; Circular SEQUENCE RS:NC_005007 LENGTH 4679 PLASMID pSE-12228-03; Circular SEQUENCE RS:NC_005006 LENGTH 8007 PLASMID pSE-12228-04; Circular SEQUENCE RS:NC_005005 LENGTH 17261 PLASMID pSE-12228-05; Circular SEQUENCE RS:NC_005004 LENGTH 24365 PLASMID pSE-12228-06; Circular SEQUENCE RS:NC_005003 LENGTH 6585 STATISTICS Number of nucleotides: 2564615 Number of protein genes: 2485 Number of RNA genes: 76 REFERENCE PMID:12950922 AUTHORS Zhang YQ, et al. TITLE Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). JOURNAL Mol Microbiol 49:1577-93 (2003) /// ENTRY T00111 Complete Genome NAME bab, B.aphidicola_Bp, BUCBP, 224915 DEFINITION Buchnera aphidicola Bp, endosymbiont of Baizongia pistaciae ANNOTATION manual TAXONOMY TAX:224915 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera DATA_SOURCE RefSeq ORIGINAL_DB Valencia CHROMOSOME Circular SEQUENCE RS:NC_004545 LENGTH 615980 PLASMID pBBp1; Circular SEQUENCE RS:NC_004555 LENGTH 2399 STATISTICS Number of nucleotides: 618379 Number of protein genes: 507 Number of RNA genes: 37 REFERENCE PMID:12522265 AUTHORS Van Ham RC, et al. TITLE Reductive genome evolution in Buchnera aphidicola. JOURNAL Proc Natl Acad Sci U S A 100:581-586 (2003) /// ENTRY T00112 Complete Genome NAME ctc, C.tetani, CLOTE, 212717 DEFINITION Clostridium tetani E88 ANNOTATION manual TAXONOMY TAX:212717 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Goettingen JCVI-Pathema DISEASE Tetanus CHROMOSOME Circular SEQUENCE RS:NC_004557 LENGTH 2799251 PLASMID pE88; Circular SEQUENCE RS:NC_004565 LENGTH 74082 STATISTICS Number of nucleotides: 2873333 Number of protein genes: 2432 Number of RNA genes: 72 REFERENCE PMID:12552129 AUTHORS Bruggemann H, et al. TITLE The genome sequence of Clostridium tetani, the causative agent of tetanus disease. JOURNAL Proc Natl Acad Sci U S A 100:1316-21 (2003) /// ENTRY T00113 Complete Genome NAME xft, X.fastidiosa_T, XYLFT, 183190 DEFINITION Xylella fastidiosa Temecula1 ANNOTATION manual TAXONOMY TAX:183190 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella DATA_SOURCE RefSeq ORIGINAL_DB Unicamp DISEASE Pierce's disease of grapevine CHROMOSOME Circular SEQUENCE RS:NC_004556 LENGTH 2519802 PLASMID pXFPD1.3; Circular SEQUENCE RS:NC_004554 LENGTH 1346 STATISTICS Number of nucleotides: 2521148 Number of protein genes: 2036 Number of RNA genes: 56 REFERENCE PMID:12533478 AUTHORS Van Sluys MA, et al. TITLE Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa. JOURNAL J Bacteriol 185:1018-26 (2003) /// ENTRY T00114 Complete Genome NAME ppu, P.putida, PSEPK, 160488 DEFINITION Pseudomonas putida KT2440 ANNOTATION manual TAXONOMY TAX:160488 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR COMMENT Versatile saprophytic soil bacterium that has been certified as a biosafety host for the cloning of foreign genes CHROMOSOME Circular SEQUENCE RS:NC_002947 LENGTH 6181863 STATISTICS Number of nucleotides: 6181863 Number of protein genes: 5350 Number of RNA genes: 96 REFERENCE PMID:12534463 AUTHORS Nelson KE, et al. TITLE Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. JOURNAL Environ Microbiol 4:799-808 (2002) /// ENTRY T00115 Complete Genome NAME lpl, L.plantarum, LACPL, 220668 DEFINITION Lactobacillus plantarum WCFS1 ANNOTATION manual TAXONOMY TAX:220668 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB Nijmengen CHROMOSOME Circular SEQUENCE RS:NC_004567 LENGTH 3308274 PLASMID pWCFS101; Circular SEQUENCE RS:NC_006375 LENGTH 1917 PLASMID pWCFS102; Circular SEQUENCE RS:NC_006376 LENGTH 2365 PLASMID pWCFS103; Circular SEQUENCE RS:NC_006377 LENGTH 36069 STATISTICS Number of nucleotides: 3348625 Number of protein genes: 3057 Number of RNA genes: 86 REFERENCE PMID:12566566 AUTHORS Kleerebezem M, et al. TITLE Complete genome sequence of Lactobacillus plantarum WCFS1. JOURNAL Proc Natl Acad Sci U S A 100:1990-5 (2003) /// ENTRY T00116 Complete Genome NAME twh, T.whipplei, TROWT, 203267 DEFINITION Tropheryma whipplei Twist ANNOTATION manual TAXONOMY TAX:203267 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Tropheryma DATA_SOURCE RefSeq ORIGINAL_DB CNRS Marseille Genoscope DISEASE Whipple's disease CHROMOSOME Circular SEQUENCE RS:NC_004572 LENGTH 927303 STATISTICS Number of nucleotides: 927303 Number of protein genes: 808 Number of RNA genes: 54 REFERENCE PMID:12902375 AUTHORS Raoult D, et al. TITLE Tropheryma whipplei twist: a human pathogenic actinobacteria with a reduced genome. JOURNAL Genome Res 13:1800-9 (2003) /// ENTRY T00117 Complete Genome NAME tws, T.whipplei_S, TROW8, 218496 DEFINITION Tropheryma whipplei TW08/27 ANNOTATION manual TAXONOMY TAX:218496 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Tropheryma DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Whipple's disease CHROMOSOME Circular SEQUENCE RS:NC_004551 LENGTH 925938 STATISTICS Number of nucleotides: 925938 Number of protein genes: 783 Number of RNA genes: 55 REFERENCE PMID:12606174 AUTHORS Bentley SD, et al. TITLE Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei. JOURNAL Lancet 361:637-44 (2003) /// ENTRY T00118 Complete Genome NAME pst, P.syringae, PSESM, 223283 DEFINITION Pseudomonas syringae pv. tomato DC3000 ANNOTATION manual TAXONOMY TAX:223283 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR PPI DISEASE Bacterial speck of tomato CHROMOSOME Circular SEQUENCE RS:NC_004578 LENGTH 6397126 PLASMID pDC3000A; Circular SEQUENCE RS:NC_004633 LENGTH 73661 PLASMID pDC3000B; Circular SEQUENCE RS:NC_004632 LENGTH 67473 STATISTICS Number of nucleotides: 6538260 Number of protein genes: 5613 Number of RNA genes: 78 REFERENCE PMID:12928499 AUTHORS Buell CR, et al. TITLE The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. JOURNAL Proc Natl Acad Sci U S A 100:10181-6 (2003) /// ENTRY T00119 Complete Genome NAME sps, S.pyogenes_SSI1, STRP3, 193567 DEFINITION Streptococcus pyogenes SSI-1 (serotype M3) ANNOTATION manual TAXONOMY TAX:193567 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NAIST DISEASE Pharyngitis, cellulitis, scarlet fever, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_004606 LENGTH 1894275 STATISTICS Number of nucleotides: 1894275 Number of protein genes: 1859 Number of RNA genes: 72 REFERENCE PMID:12799345 AUTHORS Nakagawa I, et al. TITLE Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution. JOURNAL Genome Res 13:1042-55 (2003) /// ENTRY T00120 Complete Genome NAME vpa, V.parahaemolyticus, VIBPA, 223926 DEFINITION Vibrio parahaemolyticus RIMD 2210633 ANNOTATION manual TAXONOMY TAX:223926 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB Osaka U DISEASE Gastrointestinal disease CHROMOSOME I; Circular SEQUENCE RS:NC_004603 LENGTH 3288558 CHROMOSOME II; Circular SEQUENCE RS:NC_004605 LENGTH 1877212 STATISTICS Number of nucleotides: 5165770 Number of protein genes: 4832 Number of RNA genes: 160 REFERENCE PMID:12620739 AUTHORS Makino K, et al. TITLE Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. JOURNAL Lancet 361:743-9 (2003) /// ENTRY T00121 Complete Genome NAME stt, S.typhi_Ty2, SALTI, 209261 DEFINITION Salmonella enterica subsp. enterica serovar Typhi Ty2 ANNOTATION manual TAXONOMY TAX:209261 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Typhi DATA_SOURCE RefSeq ORIGINAL_DB Wisconsin DISEASE Typhoid fever CHROMOSOME Circular SEQUENCE RS:NC_004631 LENGTH 4791961 STATISTICS Number of nucleotides: 4791961 Number of protein genes: 4314 Number of RNA genes: 109 REFERENCE PMID:12644504 AUTHORS Deng W, et al. TITLE Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. JOURNAL J Bacteriol 185:2330-7 (2003) /// ENTRY T00122 Complete Genome NAME bth, B.thetaiotaomicron, BACTN, 226186 DEFINITION Bacteroides thetaiotaomicron VPI-5482 ANNOTATION manual TAXONOMY TAX:226186 LINEAGE Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides DATA_SOURCE RefSeq ORIGINAL_DB Washington U COMMENT Dominant member of human normal distal intestinal microbiota CHROMOSOME Circular SEQUENCE RS:NC_004663 LENGTH 6260361 PLASMID p5482; Circular SEQUENCE RS:NC_004703 LENGTH 33038 STATISTICS Number of nucleotides: 6293399 Number of protein genes: 4816 Number of RNA genes: 86 REFERENCE PMID:12663928 AUTHORS Xu J, et al. TITLE A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. JOURNAL Science 299:2074-6 (2003) /// ENTRY T00123 Complete Genome NAME efa, E.faecalis, ENTFA, 226185 DEFINITION Enterococcus faecalis V583, vancomycin-resistant clinical isolate ANNOTATION manual TAXONOMY TAX:226185 LINEAGE Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Urinary tract infection, bacteremia, endocarditis CHROMOSOME Circular SEQUENCE RS:NC_004668 LENGTH 3218031 PLASMID pTEF1; Circular SEQUENCE RS:NC_004669 LENGTH 66320 PLASMID pTEF2; Circular SEQUENCE RS:NC_004671 LENGTH 57660 PLASMID pTEF3; Circular SEQUENCE RS:NC_004670 LENGTH 17963 STATISTICS Number of nucleotides: 3359974 Number of protein genes: 3264 Number of RNA genes: 80 REFERENCE PMID:12663927 AUTHORS Paulsen IT, et al. TITLE Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. JOURNAL Science 299:2071-4 (2003) /// ENTRY T00124 Complete Genome NAME cbu, C.burnetii, COXBU, 227377 DEFINITION Coxiella burnetii RSA 493 ANNOTATION manual TAXONOMY TAX:227377 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Q fever CHROMOSOME Circular SEQUENCE RS:NC_002971 LENGTH 1995281 PLASMID pQpH1; Circular SEQUENCE RS:NC_004704 LENGTH 37393 STATISTICS Number of nucleotides: 2032674 Number of protein genes: 1847 Number of RNA genes: 47 REFERENCE PMID:12704232 AUTHORS Seshadri R, et al. TITLE Complete genome sequence of the Q-fever pathogen Coxiella burnetii. JOURNAL Proc Natl Acad Sci U S A 100:5455-60 (2003) /// ENTRY T00125 Complete Genome NAME cca, C.caviae, CHLCV, 227941 DEFINITION Chlamydophila caviae GPIC ANNOTATION manual TAXONOMY TAX:227941 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Psittacosis, guinea pig inclusion conjunctivitis CHROMOSOME Circular SEQUENCE RS:NC_003361 LENGTH 1173390 PLASMID pCpGP1; Circular SEQUENCE RS:NC_004720 LENGTH 7966 STATISTICS Number of nucleotides: 1181356 Number of protein genes: 1005 Number of RNA genes: 41 REFERENCE PMID:12682364 AUTHORS Read TD, et al. TITLE Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae. JOURNAL Nucleic Acids Res 31:2134-47 (2003) /// ENTRY T00126 Complete Genome NAME sma, S.avermitilis, STRAW, 227882 DEFINITION Streptomyces avermitilis MA-4680 ANNOTATION manual TAXONOMY TAX:227882 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces DATA_SOURCE RefSeq ORIGINAL_DB Kitasato NITE COMMENT Bacterium produces avermectins, a group of antiparasitic agents used in human and veterinary medicine CHROMOSOME Circular SEQUENCE RS:NC_003155 LENGTH 9025608 PLASMID SAP1 SEQUENCE RS:NC_004719 LENGTH 94287 STATISTICS Number of nucleotides: 9119895 Number of protein genes: 7676 Number of RNA genes: 89 REFERENCE PMID:12692562 AUTHORS Ikeda H, et al. TITLE Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. JOURNAL Nat Biotechnol 21:526-31 (2003) /// ENTRY T00127 Complete Genome NAME bce, B.cereus, BACCR, 226900 DEFINITION Bacillus cereus ATCC 14579 ANNOTATION manual TAXONOMY TAX:226900 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB IG JCVI-Pathema DISEASE Food poisoning CHROMOSOME Circular SEQUENCE RS:NC_004722 LENGTH 5411809 PLASMID pBClin15; Circular SEQUENCE RS:NC_004721 LENGTH 15274 STATISTICS Number of nucleotides: 5427083 Number of protein genes: 5255 Number of RNA genes: 147 REFERENCE PMID:12721630 AUTHORS Ivanova N, et al. TITLE Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis. JOURNAL Nature 423:87-91 (2003) /// ENTRY T00128 Complete Genome NAME sfx, S.flexneri_2457T, SHIFL, 198215 DEFINITION Shigella flexneri 2457T (serotype 2a) ANNOTATION manual TAXONOMY TAX:198215 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella DATA_SOURCE RefSeq ORIGINAL_DB Wisconsin DISEASE Dysentery CHROMOSOME Circular SEQUENCE RS:NC_004741 LENGTH 4599354 STATISTICS Number of nucleotides: 4599354 Number of protein genes: 4060 Number of RNA genes: 132 REFERENCE PMID:12704152 AUTHORS Wei J, et al. TITLE Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. JOURNAL Infect Immun 71:2775-86 (2003) /// ENTRY T00129 Complete Genome NAME ban, B.anthracis, BACAN, 198094 DEFINITION Bacillus anthracis Ames ANNOTATION manual TAXONOMY TAX:198094 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR JCVI-Pathema DISEASE Anthrax CHROMOSOME Circular SEQUENCE RS:NC_003997 LENGTH 5227293 STATISTICS Number of nucleotides: 5227293 Number of protein genes: 5328 Number of RNA genes: 132 REFERENCE PMID:12721629 AUTHORS Read TD, et al. TITLE The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. JOURNAL Nature 423:81-6 (2003) /// ENTRY T00130 Complete Genome NAME neu, N.europaea, NITEU, 228410 DEFINITION Nitrosomonas europaea ATCC 19718 ANNOTATION manual TAXONOMY TAX:228410 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_004757 LENGTH 2812094 STATISTICS Number of nucleotides: 2812094 Number of protein genes: 2461 Number of RNA genes: 48 REFERENCE PMID:12700255 AUTHORS Chain P, et al. TITLE Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea. JOURNAL J Bacteriol 185:2759-73 (2003) /// ENTRY T00131 Complete Genome NAME mga, M.gallisepticum, MYCGA, 233150 DEFINITION Mycoplasma gallisepticum R ANNOTATION manual TAXONOMY TAX:233150 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB Connecticut CEVR DISEASE Chronic respiratory diseases CHROMOSOME Circular SEQUENCE RS:NC_004829 LENGTH 1012800 STATISTICS Number of nucleotides: 1012800 Number of protein genes: 726 Number of RNA genes: 39 REFERENCE PMID:12949158 AUTHORS Papazisi L, et al. TITLE The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low). JOURNAL Microbiology 149:2307-16 (2003) /// ENTRY T00132 Complete Genome NAME mbo, M.bovis, MYCBO, 233413 DEFINITION Mycobacterium bovis subsp. bovis AF2122/97 ANNOTATION manual TAXONOMY TAX:233413 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex DATA_SOURCE RefSeq ORIGINAL_DB Sanger Pasteur DISEASE Tuberculosis CHROMOSOME Circular SEQUENCE RS:NC_002945 LENGTH 4345492 STATISTICS Number of nucleotides: 4345492 Number of protein genes: 3918 Number of RNA genes: 50 REFERENCE PMID:12788972 AUTHORS Garnier T, et al. TITLE The complete genome sequence of Mycobacterium bovis. JOURNAL Proc Natl Acad Sci U S A 100:7877-82 (2003) /// ENTRY T00133 Complete Genome NAME hhe, H.hepaticus, HELHP, 235279 DEFINITION Helicobacter hepaticus ATCC 51449 ANNOTATION manual TAXONOMY TAX:235279 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq ORIGINAL_DB Wurzburg MWG DISEASE Hepatitis, typhlitis, hepatocellular tumors, and gastric bowel disease CHROMOSOME Circular SEQUENCE RS:NC_004917 LENGTH 1799146 STATISTICS Number of nucleotides: 1799146 Number of protein genes: 1875 Number of RNA genes: 40 REFERENCE PMID:12810954 AUTHORS Suerbaum S, et al. TITLE The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus. JOURNAL Proc Natl Acad Sci U S A 100:7901-6 (2003) /// ENTRY T00134 Complete Genome NAME rba, R.baltica, RHOBA, 243090 DEFINITION Rhodopirellula baltica SH 1 (Pirellula sp. strain 1) ANNOTATION manual TAXONOMY TAX:243090 LINEAGE Bacteria; Planctomycetes; Planctomycetacia; Planctomycetales; Planctomycetaceae; Rhodopirellula DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck COMMENT Marine, aerobic, heterotrophic representative bacterium CHROMOSOME Circular SEQUENCE RS:NC_005027 LENGTH 7145576 STATISTICS Number of nucleotides: 7145576 Number of protein genes: 7325 Number of RNA genes: 80 REFERENCE PMID:12835416 AUTHORS Glockner FO, et al. TITLE Complete genome sequence of the marine planctomycete Pirellula sp. strain 1. JOURNAL Proc Natl Acad Sci U S A 100:8298-303 (2003) /// ENTRY T00135 Complete Genome NAME hdu, H.ducreyi, HAEDU, 233412 DEFINITION Haemophilus ducreyi 35000HP ANNOTATION manual TAXONOMY TAX:233412 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus DATA_SOURCE RefSeq ORIGINAL_DB Ohio DISEASE Chancroid CHROMOSOME Circular SEQUENCE RS:NC_002940 LENGTH 1698955 STATISTICS Number of nucleotides: 1698955 Number of protein genes: 1717 Number of RNA genes: 64 /// ENTRY T00136 Complete Genome NAME cpt, C.pneumoniae_TW183, CHLPN, 182082 DEFINITION Chlamydophila pneumoniae TW-183 ANNOTATION manual TAXONOMY TAX:182082 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila DATA_SOURCE RefSeq ORIGINAL_DB ALTANA Pharma DISEASE Pharyngitis, bronchitis and pneumonitis CHROMOSOME Circular SEQUENCE RS:NC_005043 LENGTH 1225935 STATISTICS Number of nucleotides: 1225935 Number of protein genes: 1113 Number of RNA genes: 41 /// ENTRY T00137 Complete Genome NAME pma, P.marinus, PROMA, 167539 DEFINITION Prochlorococcus marinus SS120 (subsp. marinus CCMP1375) ANNOTATION manual TAXONOMY TAX:167539 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB CNRS Roscoff Genoscope CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_005042 LENGTH 1751080 STATISTICS Number of nucleotides: 1751080 Number of protein genes: 1883 Number of RNA genes: 46 REFERENCE PMID:12917486 AUTHORS Dufresne A, et al. TITLE From the Cover: Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. JOURNAL Proc Natl Acad Sci U S A 100:10020-10025 (2003) /// ENTRY T00138 Complete Genome NAME bfl, B.floridanus, BLOFL, 203907 DEFINITION Blochmannia floridanus, endosymbiont of Camponotus floridanus (carpenter ant) ANNOTATION manual TAXONOMY TAX:203907 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; ant endosymbionts; Candidatus Blochmannia DATA_SOURCE RefSeq ORIGINAL_DB Wurzburg CHROMOSOME Circular SEQUENCE RS:NC_005061 LENGTH 705557 STATISTICS Number of nucleotides: 705557 Number of protein genes: 583 Number of RNA genes: 42 REFERENCE PMID:12886019 AUTHORS Gil R, et al. TITLE The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes. JOURNAL Proc Natl Acad Sci U S A 100:9388-93 (2003) /// ENTRY T00139 Complete Genome NAME bpe, B.pertussis, BORPE, 257313 DEFINITION Bordetella pertussis Tohama I ANNOTATION manual TAXONOMY TAX:257313 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella DATA_SOURCE RefSeq ORIGINAL_DB GeneDB Sanger DISEASE Whooping cough CHROMOSOME Circular SEQUENCE RS:NC_002929 LENGTH 4086189 STATISTICS Number of nucleotides: 4086189 Number of protein genes: 3436 Number of RNA genes: 62 REFERENCE PMID:12910271 AUTHORS Parkhill J, et al. TITLE Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. JOURNAL Nat Genet 35:32-40 (2003) /// ENTRY T00140 Complete Genome NAME bpa, B.parapertussis, BORPA, 257311 DEFINITION Bordetella parapertussis 12822 ANNOTATION manual TAXONOMY TAX:257311 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella DATA_SOURCE RefSeq ORIGINAL_DB GeneDB Sanger DISEASE Whooping cough CHROMOSOME Circular SEQUENCE RS:NC_002928 LENGTH 4773551 STATISTICS Number of nucleotides: 4773551 Number of protein genes: 4185 Number of RNA genes: 65 REFERENCE PMID:12910271 AUTHORS Parkhill J, et al. TITLE Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. JOURNAL Nat Genet 35:32-40 (2003) /// ENTRY T00141 Complete Genome NAME bbr, B.bronchiseptica, BORBR, 257310 DEFINITION Bordetella bronchiseptica RB50 ANNOTATION manual TAXONOMY TAX:257310 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella DATA_SOURCE RefSeq ORIGINAL_DB GeneDB Sanger DISEASE Respiratory diseases CHROMOSOME Circular SEQUENCE RS:NC_002927 LENGTH 5339179 STATISTICS Number of nucleotides: 5339179 Number of protein genes: 4994 Number of RNA genes: 66 REFERENCE PMID:12910271 AUTHORS Parkhill J, et al. TITLE Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. JOURNAL Nat Genet 35:32-40 (2003) /// ENTRY T00142 Complete Genome NAME pmm, P.marinus_MED4, PROMP, 59919 DEFINITION Prochlorococcus marinus MED4 (subsp. pastoris str. CCMP1378) ANNOTATION manual TAXONOMY TAX:59919 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_005072 LENGTH 1657990 STATISTICS Number of nucleotides: 1657990 Number of protein genes: 1717 Number of RNA genes: 44 REFERENCE PMID:12917642 AUTHORS Rocap G, et al. TITLE Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. JOURNAL Nature 424:1042-7 (2003) /// ENTRY T00143 Complete Genome NAME pmt, P.marinus_MIT9313, PROMM, 74547 DEFINITION Prochlorococcus marinus MIT 9313 ANNOTATION manual TAXONOMY TAX:74547 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_005071 LENGTH 2410873 STATISTICS Number of nucleotides: 2410873 Number of protein genes: 2269 Number of RNA genes: 55 REFERENCE PMID:12917642 AUTHORS Rocap G, et al. TITLE Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. JOURNAL Nature 424:1042-7 (2003) /// ENTRY T00144 Complete Genome NAME syw, Synechococcus_WH8102, SYNPX, 84588 DEFINITION Synechococcus sp. WH 8102 ANNOTATION manual TAXONOMY TAX:84588 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_005070 LENGTH 2434428 STATISTICS Number of nucleotides: 2434428 Number of protein genes: 2519 Number of RNA genes: 53 REFERENCE PMID:12917641 AUTHORS Palenik B, et al. TITLE The genome of a motile marine Synechococcus. JOURNAL Nature 424:1037-42 (2003) /// ENTRY T00145 Complete Genome NAME pgi, P.gingivalis, PORGI, 242619 DEFINITION Porphyromonas gingivalis W83 ANNOTATION manual TAXONOMY TAX:242619 LINEAGE Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Periodontal disease CHROMOSOME Circular SEQUENCE RS:NC_002950 LENGTH 2343476 STATISTICS Number of nucleotides: 2343476 Number of protein genes: 1909 Number of RNA genes: 65 REFERENCE PMID:12949112 AUTHORS Nelson KE, et al. TITLE Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83. JOURNAL J Bacteriol 185:5591-601 (2003) /// ENTRY T00146 Complete Genome NAME wsu, W.succinogenes, WOLSU, 273121 DEFINITION Wolinella succinogenes DSM 1740 ANNOTATION manual TAXONOMY TAX:273121 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Wolinella DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck COMMENT Nonpathogenic member of Helicobacteraceae CHROMOSOME Circular SEQUENCE RS:NC_005090 LENGTH 2110355 STATISTICS Number of nucleotides: 2110355 Number of protein genes: 2042 Number of RNA genes: 49 REFERENCE PMID:14500908 AUTHORS Baar C, et al. TITLE Complete genome sequence and analysis of Wolinella succinogenes. JOURNAL Proc Natl Acad Sci U S A 100:11690-5 (2003) /// ENTRY T00147 Complete Genome NAME cvi, C.violaceum, CHRVO, 243365 DEFINITION Chromobacterium violaceum ATCC 12472 ANNOTATION manual TAXONOMY TAX:243365 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Chromobacterium DATA_SOURCE RefSeq ORIGINAL_DB LNCC Brazil COMMENT Free-living bacteria which has important enzymes for the detoxification of xenobiotics and secondary metabolites CHROMOSOME Circular SEQUENCE RS:NC_005085 LENGTH 4751080 STATISTICS Number of nucleotides: 4751080 Number of protein genes: 4407 Number of RNA genes: 123 REFERENCE PMID:14500782 AUTHORS Brazilian National Genome Project Consortium. TITLE The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability. JOURNAL Proc Natl Acad Sci U S A 100:11660-5 (2003) /// ENTRY T00148 Complete Genome NAME gvi, G.violaceus, GLOVI, 251221 DEFINITION Gloeobacter violaceus PCC7421 ANNOTATION manual TAXONOMY TAX:251221 LINEAGE Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter DATA_SOURCE RefSeq ORIGINAL_DB CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_005125 LENGTH 4659019 STATISTICS Number of nucleotides: 4659019 Number of protein genes: 4430 Number of RNA genes: 52 REFERENCE PMID:14621292 AUTHORS Nakamura Y, et al. TITLE Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids. JOURNAL DNA Res 10:137-45 (2003) /// ENTRY T00149 Complete Genome NAME plu, P.luminescens, PHOLL, 243265 DEFINITION Photorhabdus luminescens subsp. laumondii TTO1 ANNOTATION manual TAXONOMY TAX:243265 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus DATA_SOURCE RefSeq ORIGINAL_DB Pasteur CHROMOSOME Circular SEQUENCE RS:NC_005126 LENGTH 5688987 STATISTICS Number of nucleotides: 5688987 Number of protein genes: 4683 Number of RNA genes: 107 REFERENCE PMID:14528314 AUTHORS Duchaud E, et al. TITLE The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. JOURNAL Nat Biotechnol 21:1307-13 (2003) /// ENTRY T00150 Complete Genome NAME vvy, V.vulnificus_YJ016, VIBVY, 196600 DEFINITION Vibrio vulnificus YJ016 ANNOTATION manual TAXONOMY TAX:196600 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB Yang-Ming DISEASE Gastroenteritis, wound infections, primary septicemia CHROMOSOME I; Circular SEQUENCE RS:NC_005139 LENGTH 3354505 CHROMOSOME II; Circular SEQUENCE RS:NC_005140 LENGTH 1857073 PLASMID pYJ016; Circular SEQUENCE RS:NC_005128 LENGTH 48508 STATISTICS Number of nucleotides: 5260086 Number of protein genes: 5024 Number of RNA genes: 143 REFERENCE PMID:14656965 AUTHORS Chen CY, et al. TITLE Comparative genome analysis of Vibrio vulnificus, a marine pathogen. JOURNAL Genome Res 13:2577-87 (2003) /// ENTRY T00151 Complete Genome NAME cdi, C.diphtheriae, CORDI, 257309 DEFINITION Corynebacterium diphtheriae gravis NCTC13129 ANNOTATION manual TAXONOMY TAX:257309 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium DATA_SOURCE RefSeq ORIGINAL_DB GeneDB Sanger DISEASE Diphtheria CHROMOSOME Circular SEQUENCE RS:NC_002935 LENGTH 2488635 STATISTICS Number of nucleotides: 2488635 Number of protein genes: 2272 Number of RNA genes: 69 REFERENCE PMID:14602910 AUTHORS Cerdeno-Tarraga AM, et al. TITLE The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129. JOURNAL Nucleic Acids Res 31:6516-23 (2003) /// ENTRY T00152 Complete Genome NAME neq, N.equitans, NANEQ, 228908 DEFINITION Nanoarchaeum equitans Kin4-M ANNOTATION manual TAXONOMY TAX:228908 LINEAGE Archaea; Nanoarchaeota; Nanoarchaeum DATA_SOURCE RefSeq ORIGINAL_DB Diversa CHROMOSOME Circular SEQUENCE RS:NC_005213 LENGTH 490885 STATISTICS Number of nucleotides: 490885 Number of protein genes: 536 Number of RNA genes: 46 REFERENCE PMID:14566062 AUTHORS Waters E, et al. TITLE The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. JOURNAL Proc Natl Acad Sci U S A 100:12984-8 (2003) /// ENTRY T00153 Complete Genome NAME rpa, R.palustris, RHOPA, 258594 DEFINITION Rhodopseudomonas palustris CGA009 ANNOTATION manual TAXONOMY TAX:258594 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF COMMENT Photosynthetic alpha-proteobacterium CHROMOSOME Circular SEQUENCE RS:NC_005296 LENGTH 5459213 PLASMID pRPA; Circular SEQUENCE RS:NC_005297 LENGTH 8427 STATISTICS Number of nucleotides: 5467640 Number of protein genes: 4820 Number of RNA genes: 60 REFERENCE PMID:14704707 AUTHORS Larimer FW, et al. TITLE Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. JOURNAL Nat Biotechnol 22:55-61 (2004) /// ENTRY T00154 Complete Genome NAME poy, Phytoplasma_OY, ONYPE, 262768 DEFINITION Onion yellows phytoplasma OY-M ANNOTATION manual TAXONOMY TAX:262768 LINEAGE Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma; Candidatus Phytoplasma asteris DATA_SOURCE RefSeq ORIGINAL_DB Tokyo DISEASE Onions yellow disease CHROMOSOME Circular SEQUENCE RS:NC_005303 LENGTH 853092 STATISTICS Number of nucleotides: 853092 Number of protein genes: 750 Number of RNA genes: 38 REFERENCE PMID:14661021 AUTHORS Oshima K, et al. TITLE Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma. JOURNAL Nat Genet 36:27-9 (2004) /// ENTRY T00155 Complete Genome NAME gsu, G.sulfurreducens, GEOSL, 243231 DEFINITION Geobacter sulfurreducens PCA ANNOTATION manual TAXONOMY TAX:243231 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_002939 LENGTH 3814139 STATISTICS Number of nucleotides: 3814139 Number of protein genes: 3445 Number of RNA genes: 57 REFERENCE PMID:14671304 AUTHORS Methe BA, et al. TITLE Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. JOURNAL Science 302:1967-9 (2003) /// ENTRY T00156 Complete Genome NAME mpa, M.avium_paratuberculosis, MYCPA, 262316 DEFINITION Mycobacterium avium subsp. paratuberculosis k10 ANNOTATION manual TAXONOMY TAX:262316 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC) DATA_SOURCE RefSeq ORIGINAL_DB Minnesota DISEASE Johne's disease in cattle CHROMOSOME Circular SEQUENCE RS:NC_002944 LENGTH 4829781 STATISTICS Number of nucleotides: 4829781 Number of protein genes: 4350 Number of RNA genes: 49 REFERENCE PMID:16116077 AUTHORS Li L, et al. TITLE The complete genome sequence of Mycobacterium avium subspecies paratuberculosis. JOURNAL Proc Natl Acad Sci U S A 102:12344-9 (2005) /// ENTRY T00157 Complete Genome NAME tde, T.denticola, TREDE, 243275 DEFINITION Treponema denticola ATCC 35405 ANNOTATION manual TAXONOMY TAX:243275 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR LANL DISEASE Periodontal disease, gum inflammation CHROMOSOME Circular SEQUENCE RS:NC_002967 LENGTH 2843201 STATISTICS Number of nucleotides: 2843201 Number of protein genes: 2767 Number of RNA genes: 52 REFERENCE PMID:15064399 AUTHORS Seshadri R, et al. TITLE Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes. JOURNAL Proc Natl Acad Sci U S A 101:5646-51 (2004) /// ENTRY T00158 Complete Genome NAME ljo, L.johnsonii, LACJO, 257314 DEFINITION Lactobacillus johnsonii NCC 533 ANNOTATION manual TAXONOMY TAX:257314 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB Nestle CHROMOSOME Circular SEQUENCE RS:NC_005362 LENGTH 1992676 STATISTICS Number of nucleotides: 1992676 Number of protein genes: 1821 Number of RNA genes: 97 REFERENCE PMID:14966310 AUTHORS Pridmore RD, et al. TITLE The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. JOURNAL Proc Natl Acad Sci U S A : (2004) /// ENTRY T00159 Complete Genome NAME bba, B.bacteriovorus, BDEBA, 264462 DEFINITION Bdellovibrio bacteriovorus HD100 ANNOTATION manual TAXONOMY TAX:264462 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck COMMENT Predators of other Gram-negative bacteria CHROMOSOME Circular SEQUENCE RS:NC_005363 LENGTH 3782950 STATISTICS Number of nucleotides: 3782950 Number of protein genes: 3587 Number of RNA genes: 42 REFERENCE PMID:14752164 AUTHORS Rendulic S, et al. TITLE A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective. JOURNAL Science 303:689-92 (2004) /// ENTRY T00160 Complete Genome NAME wol, Wolbachia_Mel, WOLPM, 163164 DEFINITION Wolbachia sp. wMel, endosymbiont of Drosophila melanogaster (fruit fly) ANNOTATION manual TAXONOMY TAX:163164 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Wolbachieae; Wolbachia DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_002978 LENGTH 1267782 STATISTICS Number of nucleotides: 1267782 Number of protein genes: 1195 Number of RNA genes: 39 REFERENCE PMID:15024419 AUTHORS Wu M, et al. TITLE Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. JOURNAL PLoS Biol 2:E69 (2004) /// ENTRY T00161 Complete Genome NAME mmy, M.mycoides, MYCMY, 272632 DEFINITION Mycoplasma mycoides subsp. mycoides SC PG1 ANNOTATION manual TAXONOMY TAX:272632 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB KTH Sweden DISEASE Contagious bovine pleuropneumonia (CBPP) CHROMOSOME Circular SEQUENCE RS:NC_005364 LENGTH 1211703 STATISTICS Number of nucleotides: 1211703 Number of protein genes: 1016 Number of RNA genes: 36 REFERENCE PMID:14762060 AUTHORS Westberg J, et al. TITLE The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP). JOURNAL Genome Res 14:221-7 (2004) /// ENTRY T00162 Complete Genome NAME bca, B.cereus_ATCC10987, BACC1, 222523 DEFINITION Bacillus cereus ATCC 10987 ANNOTATION manual TAXONOMY TAX:222523 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Food poisoning CHROMOSOME Circular SEQUENCE RS:NC_003909 LENGTH 5224283 PLASMID pBc10987; Circular SEQUENCE RS:NC_005707 LENGTH 208369 STATISTICS Number of nucleotides: 5432652 Number of protein genes: 5843 Number of RNA genes: 133 REFERENCE PMID:14960714 AUTHORS Rasko DA, et al. TITLE The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1. JOURNAL Nucleic Acids Res 32:977-88 (2004) /// ENTRY T00163 Complete Genome NAME syc, Synechococcus_PCC6301, SYNP6, 269084 DEFINITION Synechococcus elongatus PCC6301 ANNOTATION manual TAXONOMY TAX:269084 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB Nagoya U CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_006576 LENGTH 2696255 STATISTICS Number of nucleotides: 2696255 Number of protein genes: 2527 Number of RNA genes: 55 REFERENCE PMID:17211581 AUTHORS Sugita C, et al. TITLE Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization. JOURNAL Photosynth Res 93:55-67 (2007) /// ENTRY T00164 Complete Genome NAME mmp, M.maripaludis, METMP, 267377 DEFINITION Methanococcus maripaludis S2 ANNOTATION manual TAXONOMY TAX:267377 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus DATA_SOURCE RefSeq ORIGINAL_DB U.Washington CHROMOSOME Circular SEQUENCE RS:NC_005791 LENGTH 1661137 STATISTICS Number of nucleotides: 1661137 Number of protein genes: 1722 Number of RNA genes: 50 REFERENCE PMID:15466049 AUTHORS Hendrickson EL, et al. TITLE Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis. JOURNAL J Bacteriol 186:6956-69 (2004) /// ENTRY T00165 Complete Genome NAME ypm, Y.pestis_Mediaevails, YERPE, 229193 DEFINITION Yersinia pestis biovar Mediaevails 91001 (biovar Mediaevalis) ANNOTATION manual TAXONOMY TAX:229193 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB Beijing COMMENT Human-avirulent strain isolated from the rodent Brandt's vole- Microtus brandti CHROMOSOME Circular SEQUENCE RS:NC_005810 LENGTH 4595065 PLASMID pCD1; Circular SEQUENCE RS:NC_005813 LENGTH 70159 PLASMID pCRY; Circular SEQUENCE RS:NC_005814 LENGTH 21742 PLASMID pMT1; Circular SEQUENCE RS:NC_005815 LENGTH 106642 PLASMID pPCP1; Circular SEQUENCE RS:NC_005816 LENGTH 9609 STATISTICS Number of nucleotides: 4803217 Number of protein genes: 4137 Number of RNA genes: 102 REFERENCE PMID:15368893 AUTHORS Song Y, et al. TITLE Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans. JOURNAL DNA Res 11:179-97 (2004) /// ENTRY T00166 Complete Genome NAME lic, L.interrogans_Copenhageni, LEPIC, 267671 DEFINITION Leptospira interrogans serovar Copenhageni Fiocruz L1-130 ANNOTATION manual TAXONOMY TAX:267671 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira DATA_SOURCE RefSeq ORIGINAL_DB Unicamp DISEASE Leptospirosis CHROMOSOME I; Circular SEQUENCE RS:NC_005823 LENGTH 4277185 CHROMOSOME II; Circular SEQUENCE RS:NC_005824 LENGTH 350181 STATISTICS Number of nucleotides: 4627366 Number of protein genes: 3658 Number of RNA genes: 42 REFERENCE PMID:15028702 AUTHORS Nascimento AL, et al. TITLE Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis. JOURNAL J Bacteriol 186:2164-72 (2004) /// ENTRY T00167 Complete Genome NAME ago, A.gossypii, ASHGO, 284811 DEFINITION Ashbya gossypii (Eremothecium gossypii) ATCC 10895 ANNOTATION manual TAXONOMY TAX:284811 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium DATA_SOURCE RefSeq ORIGINAL_DB AGD STATISTICS Number of protein genes: 4725 Number of RNA genes: 25 REFERENCE PMID:15001715 AUTHORS Dietrich FS, et al. TITLE The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome. JOURNAL Science 304:304-7 (2004) /// ENTRY T00168 Complete Genome NAME cpv, C.parvum, CRYPV, 353152 DEFINITION Cryptosporidium parvum Iowa II ANNOTATION manual TAXONOMY TAX:353152 LINEAGE Eukaryota; Alveolata; Apicomplexa; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium DATA_SOURCE RefSeq ORIGINAL_DB Minnesota ApiDB_CryptoDB DISEASE Cryptosporidiosis STATISTICS Number of protein genes: 3805 REFERENCE PMID:15044751 AUTHORS Abrahamsen MS, et al. TITLE Complete genome sequence of the apicomplexan, Cryptosporidium parvum. JOURNAL Science 304:441-5 (2004) /// ENTRY T00169 Complete Genome NAME baa, B.anthracis_A2012, BACAN, 191218 DEFINITION Bacillus anthracis A2012 ANNOTATION manual TAXONOMY TAX:191218 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Anthrax COMMENT This record was discontinued by NCBI. CHROMOSOME Circular SEQUENCE RS:NC_003995 LENGTH 5093554 PLASMID pXO1; Circular SEQUENCE RS:NC_003980 LENGTH 181677 PLASMID pXO2; Circular SEQUENCE RS:NC_003981 LENGTH 94829 STATISTICS Number of nucleotides: 5370060 Number of protein genes: 5852 REFERENCE PMID:12004073 AUTHORS Read TD, et al. TITLE Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis. JOURNAL Science 296:2028-33 (2002) /// ENTRY T00170 Complete Genome NAME tth, T.thermophilus, THET2, 262724 DEFINITION Thermus thermophilus HB27 ANNOTATION manual TAXONOMY TAX:262724 LINEAGE Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus DATA_SOURCE RefSeq ORIGINAL_DB Goettingen CHROMOSOME Circular SEQUENCE RS:NC_005835 LENGTH 1894877 PLASMID pTT27; Circular SEQUENCE RS:NC_005838 LENGTH 232605 STATISTICS Number of nucleotides: 2127482 Number of protein genes: 2210 Number of RNA genes: 53 REFERENCE PMID:15064768 AUTHORS Henne A, et al. TITLE The genome sequence of the extreme thermophile Thermus thermophilus. JOURNAL Nat Biotechnol 22:547-53 (2004) /// ENTRY T00171 Complete Genome NAME dvu, D.vulgaris, DESVH, 882 DEFINITION Desulfovibrio vulgaris subsp. vulgaris Hildenborough ANNOTATION manual TAXONOMY TAX:882 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR COMMENT Sulfate-reducing bacteria CHROMOSOME Circular SEQUENCE RS:NC_002937 LENGTH 3570858 PLASMID megaplasmid; Circular SEQUENCE RS:NC_005863 LENGTH 202301 STATISTICS Number of nucleotides: 3773159 Number of protein genes: 3531 Number of RNA genes: 87 REFERENCE PMID:15077118 AUTHORS Heidelberg JF, et al. TITLE The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. JOURNAL Nat Biotechnol 22:554-9 (2004) /// ENTRY T00172 Complete Genome NAME pcu, Parachlamydia_UWE25, PARUW, 264201 DEFINITION Candidatus Protochlamydia amoebophila UWE25 (Parachlamydia sp. UWE25), endosymbiont of Acanthamoeba sp. ANNOTATION manual TAXONOMY TAX:264201 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Candidatus Protochlamydia DATA_SOURCE RefSeq ORIGINAL_DB MIPS Vienna COMMENT Free-living amoebae CHROMOSOME Circular SEQUENCE RS:NC_005861 LENGTH 2414465 STATISTICS Number of nucleotides: 2414465 Number of protein genes: 2031 Number of RNA genes: 44 REFERENCE PMID:15073324 AUTHORS Horn M, et al. TITLE Illuminating the evolutionary history of chlamydiae. JOURNAL Science 304:728-30 (2004) /// ENTRY T00173 Complete Genome NAME ppr, P.profundum, PHOPR, 298386 DEFINITION Photobacterium profundum SS9 ANNOTATION manual TAXONOMY TAX:298386 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium DATA_SOURCE RefSeq ORIGINAL_DB Padova Italy CHROMOSOME 1; Circular SEQUENCE RS:NC_006370 LENGTH 4085304 CHROMOSOME 2; Circular SEQUENCE RS:NC_006371 LENGTH 2237943 PLASMID pPBPR1; Circular SEQUENCE RS:NC_005871 LENGTH 80033 STATISTICS Number of nucleotides: 6403280 Number of protein genes: 5489 Number of RNA genes: 213 REFERENCE PMID:15746425 AUTHORS Vezzi A, et al. TITLE Life at depth: Photobacterium profundum genome sequence and expression analysis. JOURNAL Science 307:1459-61 (2005) /// ENTRY T00174 Complete Genome NAME lmf, L.monocytogenes_F2365, LISMF, 265669 DEFINITION Listeria monocytogenes F2365 (serotype 4b) ANNOTATION manual TAXONOMY TAX:265669 LINEAGE Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Listeriosis CHROMOSOME Circular SEQUENCE RS:NC_002973 LENGTH 2905187 STATISTICS Number of nucleotides: 2905187 Number of protein genes: 2821 Number of RNA genes: 86 REFERENCE PMID:15115801 AUTHORS Nelson KE, et al. TITLE Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. JOURNAL Nucleic Acids Res 32:2386-95 (2004) /// ENTRY T00175 Complete Genome NAME cme, C.merolae, CYAME, 280699 DEFINITION Cyanidioschyzon merolae 10D ANNOTATION manual TAXONOMY TAX:280699 LINEAGE Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon DATA_SOURCE U Tokyo ORIGINAL_DB U Tokyo STATISTICS Number of protein genes: 5013 REFERENCE PMID:15071595 AUTHORS Matsuzaki M, et al. TITLE Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. JOURNAL Nature 428:653-7 (2004) /// ENTRY T00176 Complete Genome NAME mmo, M.mobile, MYCMO, 267748 DEFINITION Mycoplasma mobile 163K ANNOTATION manual TAXONOMY TAX:267748 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB BROAD COMMENT Fish pathogen CHROMOSOME Circular SEQUENCE RS:NC_006908 LENGTH 777079 STATISTICS Number of nucleotides: 777079 Number of protein genes: 633 Number of RNA genes: 33 REFERENCE PMID:15289470 AUTHORS Jaffe JD, et al. TITLE The complete genome and proteome of Mycoplasma mobile. JOURNAL Genome Res 14:1447-61 (2004) /// ENTRY T00177 Complete Genome NAME pto, P.torridus, PICTO, 263820 DEFINITION Picrophilus torridus DSM 9790 ANNOTATION manual TAXONOMY TAX:263820 LINEAGE Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Picrophilaceae; Picrophilus DATA_SOURCE RefSeq ORIGINAL_DB Goettingen CHROMOSOME Circular SEQUENCE RS:NC_005877 LENGTH 1545895 STATISTICS Number of nucleotides: 1545895 Number of protein genes: 1535 Number of RNA genes: 48 REFERENCE PMID:15184674 AUTHORS Futterer O, et al. TITLE Genome sequence of Picrophilus torridus and its implications for life around pH 0. JOURNAL Proc Natl Acad Sci U S A 101:9091-6 (2004) /// ENTRY T00178 Complete Genome NAME bar, B.anthracis_Ames0581, BACAN, 261594 DEFINITION Bacillus anthracis Ames 0581 (Ames Ancestor) ANNOTATION manual TAXONOMY TAX:261594 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR JCVI-Pathema DISEASE Anthrax CHROMOSOME Circular SEQUENCE RS:NC_007530 LENGTH 5227419 PLASMID pXO1; Circular SEQUENCE RS:NC_007322 LENGTH 181677 PLASMID pXO2; Circular SEQUENCE RS:NC_007323 LENGTH 94830 STATISTICS Number of nucleotides: 5503926 Number of protein genes: 5583 Number of RNA genes: 128 REFERENCE PMID:18952800 AUTHORS Ravel J, et al. TITLE The complete genome sequence of Bacillus anthracis Ames "Ancestor". JOURNAL J Bacteriol 191:445-6 (2009) /// ENTRY T00179 Complete Genome NAME btk, B.thuringiensis, BACHK, 281309 DEFINITION Bacillus thuringiensis 97-27 (serovar konkukian) ANNOTATION manual TAXONOMY TAX:281309 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JGI JCVI-Pathema DISEASE Sotto disease COMMENT An insecticide that make it useful for pest control in certain situations CHROMOSOME Circular SEQUENCE RS:NC_005957 LENGTH 5237682 PLASMID pBT9727; Circular SEQUENCE RS:NC_006578 LENGTH 77112 STATISTICS Number of nucleotides: 5314794 Number of protein genes: 5197 Number of RNA genes: 146 REFERENCE PMID:16621833 AUTHORS Han CS, et al. TITLE Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. JOURNAL J Bacteriol 188:3382-90 (2006) /// ENTRY T00180 Complete Genome NAME bhe, B.henselae, BARHE, 283166 DEFINITION Bartonella henselae Houston-1 ANNOTATION manual TAXONOMY TAX:283166 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella DATA_SOURCE RefSeq ORIGINAL_DB Uppsala DISEASE Bacillary angiomatosis, cat scratch fever CHROMOSOME Circular SEQUENCE RS:NC_005956 LENGTH 1931047 STATISTICS Number of nucleotides: 1931047 Number of protein genes: 1488 Number of RNA genes: 53 REFERENCE PMID:15210978 AUTHORS Alsmark CM, et al. TITLE The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. JOURNAL Proc Natl Acad Sci U S A 101:9716-21 (2004) /// ENTRY T00181 Complete Genome NAME bqu, B.quintana, BARQU, 283165 DEFINITION Bartonella quintana Toulouse ANNOTATION manual TAXONOMY TAX:283165 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella DATA_SOURCE RefSeq ORIGINAL_DB Uppsala DISEASE Bacillary angiomatosis, trench fever CHROMOSOME Circular SEQUENCE RS:NC_005955 LENGTH 1581384 STATISTICS Number of nucleotides: 1581384 Number of protein genes: 1142 Number of RNA genes: 49 REFERENCE PMID:15210978 AUTHORS Alsmark CM, et al. TITLE The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. JOURNAL Proc Natl Acad Sci U S A 101:9716-21 (2004) /// ENTRY T00182 Complete Genome NAME sar, S.aureus_MRSA252, STAAR, 282458 DEFINITION Staphylococcus aureus subsp. aureus MRSA252, methicillin-resistant ANNOTATION manual TAXONOMY TAX:282458 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Toxic-shock syndrome and staphylococcal scarlet fever CHROMOSOME Circular SEQUENCE RS:NC_002952 LENGTH 2902619 STATISTICS Number of nucleotides: 2902619 Number of protein genes: 2650 Number of RNA genes: 101 REFERENCE PMID:15213324 AUTHORS Holden MT, et al. TITLE Complete genomes of two clinical Staphylococcus aureus strains: Evidence for the rapid evolution of virulence and drug resistance. JOURNAL Proc Natl Acad Sci U S A 101:9786-91 (2004) /// ENTRY T00183 Complete Genome NAME sas, S.aureus_MSSA476, STAAS, 282459 DEFINITION Staphylococcus aureus subsp. aureus MSSA476, methicillin- susceptible ANNOTATION manual TAXONOMY TAX:282459 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Toxic-shock syndrome and staphylococcal scarlet fever CHROMOSOME Circular SEQUENCE RS:NC_002953 LENGTH 2799802 PLASMID pSAS; Circular SEQUENCE RS:NC_005951 LENGTH 20652 STATISTICS Number of nucleotides: 2820454 Number of protein genes: 2590 Number of RNA genes: 104 REFERENCE PMID:15213324 AUTHORS Holden MT, et al. TITLE Complete genomes of two clinical Staphylococcus aureus strains: Evidence for the rapid evolution of virulence and drug resistance. JOURNAL Proc Natl Acad Sci U S A 101:9786-91 (2004) /// ENTRY T00184 Complete Genome NAME bat, B.anthracis_Sterne, BACAN, 260799 DEFINITION Bacillus anthracis Sterne ANNOTATION manual TAXONOMY TAX:260799 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JGI JCVI-Pathema DISEASE Anthrax CHROMOSOME Circular SEQUENCE RS:NC_005945 LENGTH 5228663 STATISTICS Number of nucleotides: 5228663 Number of protein genes: 5287 Number of RNA genes: 128 /// ENTRY T00185 Complete Genome NAME aci, Acinetobacter_ADP1, ACIAD, 62977 DEFINITION Acinetobacter sp. ADP1 ANNOTATION manual TAXONOMY TAX:62977 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter DATA_SOURCE RefSeq ORIGINAL_DB Genoscope DISEASE Nosocomial infections in immunocompromised individuals CHROMOSOME Circular SEQUENCE RS:NC_005966 LENGTH 3598621 STATISTICS Number of nucleotides: 3598621 Number of protein genes: 3307 Number of RNA genes: 100 REFERENCE PMID:15514110 AUTHORS Barbe V, et al. TITLE Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. JOURNAL Nucleic Acids Res 32:5766-79 (2004) /// ENTRY T00186 Complete Genome NAME eca, E.carotovora, ERWCT, 218491 DEFINITION Erwinia carotovora subsp. atroseptica SCRI1043 ANNOTATION manual TAXONOMY TAX:218491 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium DATA_SOURCE RefSeq ORIGINAL_DB GeneDB Sanger DISEASE Soft rot and blackleg potato diseases CHROMOSOME Circular SEQUENCE RS:NC_004547 LENGTH 5064019 STATISTICS Number of nucleotides: 5064019 Number of protein genes: 4472 Number of RNA genes: 122 REFERENCE PMID:15263089 AUTHORS Bell KS, et al. TITLE Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. JOURNAL Proc Natl Acad Sci U S A 101:11105-10 (2004) /// ENTRY T00187 Complete Genome NAME mfl, M.florum, MESFL, 265311 DEFINITION Mesoplasma florum L1 ANNOTATION manual TAXONOMY TAX:265311 LINEAGE Bacteria; Tenericutes; Mollicutes; Entomoplasmatales; Entomoplasmataceae; Mesoplasma DATA_SOURCE RefSeq ORIGINAL_DB BROAD COMMENT Nonpathogenic, nonmotile Mycoplasma species CHROMOSOME Circular SEQUENCE RS:NC_006055 LENGTH 793224 STATISTICS Number of nucleotides: 793224 Number of protein genes: 682 Number of RNA genes: 35 /// ENTRY T00188 Complete Genome NAME pac, P.acnes, PROAC, 267747 DEFINITION Propionibacterium acnes KPA171202 ANNOTATION manual TAXONOMY TAX:267747 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Propionibacterineae; Propionibacteriaceae; Propionibacterium DATA_SOURCE RefSeq ORIGINAL_DB Goettingen CHROMOSOME Circular SEQUENCE RS:NC_006085 LENGTH 2560265 STATISTICS Number of nucleotides: 2560265 Number of protein genes: 2297 Number of RNA genes: 54 REFERENCE PMID:15286373 AUTHORS Bruggemann H, et al. TITLE The complete genome sequence of Propionibacterium acnes, a commensal of human skin. JOURNAL Science 305:671-3 (2004) /// ENTRY T00189 Complete Genome NAME cal, C.albicans, CANAL, 237561 DEFINITION Candida albicans SC5314 ANNOTATION manual TAXONOMY TAX:237561 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida DATA_SOURCE RefSeq ORIGINAL_DB NRC Canada DISEASE Thrush, disseminated candidiasis, chronic mucocutaneous candidiasis STATISTICS Number of protein genes: 14629 Number of RNA genes: 32 REFERENCE PMID:15123810 AUTHORS Jones T, et al. TITLE The diploid genome sequence of Candida albicans. JOURNAL Proc Natl Acad Sci U S A 101:7329-34 (2004) /// ENTRY T00190 Complete Genome NAME lxx, L.xyli, LEIXX, 281090 DEFINITION Leifsonia xyli subsp. xyli CTCB07 ANNOTATION manual TAXONOMY TAX:281090 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Microbacteriaceae; Leifsonia DATA_SOURCE RefSeq ORIGINAL_DB U. Campinas - Brazil DISEASE Ratoon stunting disease in sugarcane CHROMOSOME Circular SEQUENCE RS:NC_006087 LENGTH 2584158 STATISTICS Number of nucleotides: 2584158 Number of protein genes: 2030 Number of RNA genes: 50 REFERENCE PMID:15305603 AUTHORS Monteiro-Vitorello CB, et al. TITLE The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli. JOURNAL Mol Plant Microbe Interact 17:827-36 (2004) /// ENTRY T00191 Complete Genome NAME spa, S.pyogenes_MGAS10394, STRP6, 286636 DEFINITION Streptococcus pyogenes MGAS10394 (serotype M6) ANNOTATION manual TAXONOMY TAX:286636 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML DISEASE Pharyngitis, cellulitis, scarlet fever, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_006086 LENGTH 1899877 STATISTICS Number of nucleotides: 1899877 Number of protein genes: 1886 Number of RNA genes: 85 REFERENCE PMID:15272401 AUTHORS Banks DJ, et al. TITLE Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain. JOURNAL J Infect Dis 190:727-38 (2004) /// ENTRY T00192 Complete Genome NAME dps, D.psychrophila, DESPS, 177439 DEFINITION Desulfotalea psychrophila LSv54 ANNOTATION manual TAXONOMY TAX:177439 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfotalea DATA_SOURCE RefSeq ORIGINAL_DB e.gene Germany COMMENT Marine sulfate-reducing delta-proteobacterium CHROMOSOME Circular SEQUENCE RS:NC_006138 LENGTH 3523383 PLASMID large SEQUENCE RS:NC_006139 LENGTH 121587 PLASMID small SEQUENCE RS:NC_006140 LENGTH 14664 STATISTICS Number of nucleotides: 3659634 Number of protein genes: 3234 Number of RNA genes: 87 REFERENCE PMID:15305914 AUTHORS Rabus R, et al. TITLE The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments. JOURNAL Environ Microbiol 6:887-902 (2004) /// ENTRY T00193 Complete Genome NAME rty, R.typhi, RICTY, 257363 DEFINITION Rickettsia typhi Wilmington (ATCC VR-144) ANNOTATION manual TAXONOMY TAX:257363 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; typhus group DATA_SOURCE RefSeq ORIGINAL_DB Baylor DISEASE Murine typhus CHROMOSOME Circular SEQUENCE RS:NC_006142 LENGTH 1111496 STATISTICS Number of nucleotides: 1111496 Number of protein genes: 838 Number of RNA genes: 39 REFERENCE PMID:15317790 AUTHORS McLeod MP, et al. TITLE Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae. JOURNAL J Bacteriol 186:5842-55 (2004) /// ENTRY T00194 Complete Genome NAME bga, B.garinii, BORGA, 290434 DEFINITION Borrelia garinii PBi ANNOTATION manual TAXONOMY TAX:290434 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia; Borrelia burgdorferi group DATA_SOURCE RefSeq ORIGINAL_DB Jena DISEASE Neuroborreliosis CHROMOSOME (linear chromosome) SEQUENCE RS:NC_006156 LENGTH 904246 PLASMID cp26; Circular SEQUENCE RS:NC_006128 LENGTH 27108 PLASMID lp54 SEQUENCE RS:NC_006129 LENGTH 55560 STATISTICS Number of nucleotides: 986914 Number of protein genes: 929 Number of RNA genes: 36 REFERENCE PMID:15547252 AUTHORS Glockner G, et al. TITLE Comparative analysis of the Borrelia garinii genome. JOURNAL Nucleic Acids Res 32:6038-46 (2004) /// ENTRY T00195 Complete Genome NAME yps, Y.pseudotuberculosis, YERPS, 273123 DEFINITION Yersinia pseudotuberculosis IP32953 ANNOTATION manual TAXONOMY TAX:273123 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB Pasteur LLNL DISEASE Mesenteric adenitis CHROMOSOME Circular SEQUENCE RS:NC_006155 LENGTH 4744671 PLASMID pYV; Circular SEQUENCE RS:NC_006153 LENGTH 68525 PLASMID pYptb32953; Circular SEQUENCE RS:NC_006154 LENGTH 27702 STATISTICS Number of nucleotides: 4840898 Number of protein genes: 4038 Number of RNA genes: 122 REFERENCE PMID:15358858 AUTHORS Chain PS, et al. TITLE Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. JOURNAL Proc Natl Acad Sci U S A 101:13826-31 (2004) /// ENTRY T00196 Complete Genome NAME sth, S.thermophilum, SYMTH, 292459 DEFINITION Symbiobacterium thermophilum IAM14863 ANNOTATION manual TAXONOMY TAX:292459 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVIII. Incertae Sedis; Symbiobacterium DATA_SOURCE RefSeq ORIGINAL_DB Kitasato Nihon U CHROMOSOME Circular SEQUENCE RS:NC_006177 LENGTH 3566135 STATISTICS Number of nucleotides: 3566135 Number of protein genes: 3338 Number of RNA genes: 117 REFERENCE PMID:15383646 AUTHORS Ueda K, et al. TITLE Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism. JOURNAL Nucleic Acids Res 32:4937-44 (2004) /// ENTRY T00197 Complete Genome NAME bli, B.licheniformis, BACLD, 279010 DEFINITION Bacillus licheniformis ATCC 14580 ANNOTATION manual TAXONOMY TAX:279010 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus DATA_SOURCE RefSeq ORIGINAL_DB Novozymes COMMENT Soil bacterium used in the biotechnology industry to manufacture enzymes, antibiotics, biochemicals and consumer products CHROMOSOME Circular SEQUENCE RS:NC_006270 LENGTH 4222597 STATISTICS Number of nucleotides: 4222597 Number of protein genes: 4173 Number of RNA genes: 93 REFERENCE PMID:15461803 AUTHORS Rey MW, et al. TITLE Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species. JOURNAL Genome Biol 5:R77 (2004) /// ENTRY T00198 Complete Genome NAME bcz, B.cereus_ZK, BACCZ, 288681 DEFINITION Bacillus cereus E33L (zebra killer) ANNOTATION manual TAXONOMY TAX:288681 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JGI JCVI-Pathema DISEASE Food poisoning COMMENT Isolated from dead zebra carcass in Namibia CHROMOSOME Circular SEQUENCE RS:NC_006274 LENGTH 5300915 PLASMID pE33L466; Circular SEQUENCE RS:NC_007103 LENGTH 466370 PLASMID pE33L5; Circular SEQUENCE RS:NC_007104 LENGTH 5108 PLASMID pE33L54; Circular SEQUENCE RS:NC_007105 LENGTH 53501 PLASMID pE33L8; Circular SEQUENCE RS:NC_007106 LENGTH 8191 PLASMID pE33L9; Circular SEQUENCE RS:NC_007107 LENGTH 9150 STATISTICS Number of nucleotides: 5843235 Number of protein genes: 5641 Number of RNA genes: 135 REFERENCE PMID:16621833 AUTHORS Han CS, et al. TITLE Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. JOURNAL J Bacteriol 188:3382-90 (2006) /// ENTRY T00199 Complete Genome NAME lpn, L.pneumophila, LEGPH, 272624 DEFINITION Legionella pneumophila subsp. pneumophila Philadelphia 1 ANNOTATION manual TAXONOMY TAX:272624 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella DATA_SOURCE RefSeq ORIGINAL_DB Columbia Pasteur DISEASE Legionnaire's disease CHROMOSOME Circular SEQUENCE RS:NC_002942 LENGTH 3397754 STATISTICS Number of nucleotides: 3397754 Number of protein genes: 2942 Number of RNA genes: 52 REFERENCE PMID:15448271 AUTHORS Chien M, et al. TITLE The genomic sequence of the accidental pathogen Legionella pneumophila. JOURNAL Science 305:1966-8 (2004) /// ENTRY T00200 Complete Genome NAME bld, B.licheniformis_DSM13, BACLD, 279010 DEFINITION Bacillus licheniformis DSM13 (ATCC 14580) ANNOTATION manual TAXONOMY TAX:279010 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus DATA_SOURCE RefSeq ORIGINAL_DB Goettingen COMMENT Organism with great industrial potential CHROMOSOME Circular SEQUENCE RS:NC_006322 LENGTH 4222645 STATISTICS Number of nucleotides: 4222645 Number of protein genes: 4192 Number of RNA genes: 93 REFERENCE PMID:15383718 AUTHORS Veith B, et al. TITLE The Complete Genome Sequence of Bacillus licheniformis DSM13, an Organism with Great Industrial Potential. JOURNAL J Mol Microbiol Biotechnol 7:204-11 (2004) /// ENTRY T00201 Complete Genome NAME msu, M.succiniciproducens, MANSM, 221988 DEFINITION Mannheimia succiniciproducens MBEL55E ANNOTATION manual TAXONOMY TAX:221988 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Basfia DATA_SOURCE RefSeq ORIGINAL_DB KAIST Korea COMMENT Bovine rumen bacteria CHROMOSOME Circular SEQUENCE RS:NC_006300 LENGTH 2314078 STATISTICS Number of nucleotides: 2314078 Number of protein genes: 2369 Number of RNA genes: 79 REFERENCE PMID:15378067 AUTHORS Hong SH, et al. TITLE The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens. JOURNAL Nat Biotechnol 22:1275-1281 (2004) /// ENTRY T00202 Complete Genome NAME bfr, B.fragilis, BACFR, 295405 DEFINITION Bacteroides fragilis YCH46 ANNOTATION manual TAXONOMY TAX:295405 LINEAGE Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides DATA_SOURCE RefSeq ORIGINAL_DB Kitasato DISEASE Severe infection, diarrhea, and abscesses CHROMOSOME Circular SEQUENCE RS:NC_006347 LENGTH 5277274 PLASMID pBFY46; Circular SEQUENCE RS:NC_006297 LENGTH 33716 STATISTICS Number of nucleotides: 5310990 Number of protein genes: 4625 Number of RNA genes: 92 REFERENCE PMID:15466707 AUTHORS Kuwahara T, et al. TITLE Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation. JOURNAL Proc Natl Acad Sci U S A 101:14919-24 (2004) /// ENTRY T00203 Complete Genome NAME bps, B.pseudomallei, BURPS, 272560 DEFINITION Burkholderia pseudomallei K96243 ANNOTATION manual TAXONOMY TAX:272560 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB GeneDB Sanger JCVI-Pathema DISEASE Melioidosis CHROMOSOME 1; Circular SEQUENCE RS:NC_006350 LENGTH 4074542 CHROMOSOME 2; Circular SEQUENCE RS:NC_006351 LENGTH 3173005 STATISTICS Number of nucleotides: 7247547 Number of protein genes: 5728 Number of RNA genes: 81 REFERENCE PMID:15377794 AUTHORS Holden MT, et al. TITLE Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. JOURNAL Proc Natl Acad Sci U S A 101:14240-5 (2004) /// ENTRY T00204 Complete Genome NAME bma, B.mallei, BURMA, 243160 DEFINITION Burkholderia mallei ATCC 23344 ANNOTATION manual TAXONOMY TAX:243160 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR JCVI-Pathema DISEASE Glanders and pneumonia COMMENT Potential biological weapon CHROMOSOME 1; Circular SEQUENCE RS:NC_006348 LENGTH 3510148 CHROMOSOME 2; Circular SEQUENCE RS:NC_006349 LENGTH 2325379 STATISTICS Number of nucleotides: 5835527 Number of protein genes: 5024 Number of RNA genes: 69 REFERENCE PMID:15377793 AUTHORS Nierman WC, et al. TITLE From the Cover: Structural flexibility in the Burkholderia mallei genome. JOURNAL Proc Natl Acad Sci U S A 101:14246-51 (2004) /// ENTRY T00205 Complete Genome NAME mca, M.capsulatus, METCA, 243233 DEFINITION Methylococcus capsulatus Bath ANNOTATION manual TAXONOMY TAX:243233 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_002977 LENGTH 3304561 STATISTICS Number of nucleotides: 3304561 Number of protein genes: 2956 Number of RNA genes: 54 REFERENCE PMID:15383840 AUTHORS Ward N, et al. TITLE Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). JOURNAL PLoS Biol 2:e303 (2004) /// ENTRY T00206 Complete Genome NAME mhy, M.hyopneumoniae, MYCH2, 295358 DEFINITION Mycoplasma hyopneumoniae 232 ANNOTATION manual TAXONOMY TAX:295358 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB Alabama MBR DISEASE Enzootic pneumonia CHROMOSOME Circular SEQUENCE RS:NC_006360 LENGTH 892758 STATISTICS Number of nucleotides: 892758 Number of protein genes: 691 Number of RNA genes: 36 REFERENCE PMID:15489423 AUTHORS Minion FC, et al. TITLE The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis. JOURNAL J Bacteriol 186:7123-33 (2004) /// ENTRY T00207 Complete Genome NAME nfa, N.farcinica, NOCFA, 247156 DEFINITION Nocardia farcinica IFM 10152 ANNOTATION manual TAXONOMY TAX:247156 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Nocardiaceae; Nocardia DATA_SOURCE RefSeq ORIGINAL_DB NIH Japan Kitasato DISEASE Nocardiosis CHROMOSOME Circular SEQUENCE RS:NC_006361 LENGTH 6021225 PLASMID pNF1; Circular SEQUENCE RS:NC_006362 LENGTH 184026 PLASMID pNF2; Circular SEQUENCE RS:NC_006363 LENGTH 87093 STATISTICS Number of nucleotides: 6292344 Number of protein genes: 5936 Number of RNA genes: 64 REFERENCE PMID:15466710 AUTHORS Ishikawa J, et al. TITLE The complete genomic sequence of Nocardia farcinica IFM 10152. JOURNAL Proc Natl Acad Sci U S A 101:14925-30 (2004) /// ENTRY T00208 Complete Genome NAME lpf, L.pneumophila_Lens, LEGPL, 297245 DEFINITION Legionella pneumophila Lens ANNOTATION manual TAXONOMY TAX:297245 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella DATA_SOURCE RefSeq ORIGINAL_DB Pasteur DISEASE Legionnaire's disease CHROMOSOME SEQUENCE RS:NC_006369 LENGTH 3345687 PLASMID pLPL SEQUENCE RS:NC_006366 LENGTH 59832 STATISTICS Number of nucleotides: 3405519 Number of protein genes: 2934 Number of RNA genes: 54 REFERENCE PMID:15467720 AUTHORS Cazalet C, et al. TITLE Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity. JOURNAL Nat Genet 36:1165-73 (2004) /// ENTRY T00209 Complete Genome NAME lpp, L.pneumophila_Paris, LEGPA, 297246 DEFINITION Legionella pneumophila Paris ANNOTATION manual TAXONOMY TAX:297246 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella DATA_SOURCE RefSeq ORIGINAL_DB Pasteur DISEASE Legionnaire's disease CHROMOSOME Circular SEQUENCE RS:NC_006368 LENGTH 3503610 PLASMID pLPP; Circular SEQUENCE RS:NC_006365 LENGTH 131885 STATISTICS Number of nucleotides: 3635495 Number of protein genes: 3166 Number of RNA genes: 53 REFERENCE PMID:15467720 AUTHORS Cazalet C, et al. TITLE Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity. JOURNAL Nat Genet 36:1165-73 (2004) /// ENTRY T00210 Complete Genome NAME cho, C.hominis, CRYHO, 353151 DEFINITION Cryptosporidium hominis TU502 ANNOTATION manual TAXONOMY TAX:353151 LINEAGE Eukaryota; Alveolata; Apicomplexa; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium DATA_SOURCE RefSeq ORIGINAL_DB VCU DISEASE Cryptosporidiosis STATISTICS Number of protein genes: 3885 REFERENCE PMID:15510150 AUTHORS Xu P, et al. TITLE The genome of Cryptosporidium hominis. JOURNAL Nature 431:1107-12 (2004) /// ENTRY T00211 Complete Genome NAME hma, H.marismortui, HALMA, 272569 DEFINITION Haloarcula marismortui ATCC 43049 ANNOTATION manual TAXONOMY TAX:272569 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula DATA_SOURCE RefSeq ORIGINAL_DB ISB CHROMOSOME I; Circular SEQUENCE RS:NC_006396 LENGTH 3131724 CHROMOSOME II; Circular SEQUENCE RS:NC_006397 LENGTH 288050 PLASMID pNG700; Circular SEQUENCE RS:NC_006395 LENGTH 410554 PLASMID pNG600; Circular SEQUENCE RS:NC_006394 LENGTH 155300 PLASMID pNG500; Circular SEQUENCE RS:NC_006393 LENGTH 132678 PLASMID pNG400; Circular SEQUENCE RS:NC_006392 LENGTH 50060 PLASMID pNG300; Circular SEQUENCE RS:NC_006391 LENGTH 39521 PLASMID pNG200; Circular SEQUENCE RS:NC_006390 LENGTH 33452 PLASMID pNG100; Circular SEQUENCE RS:NC_006389 LENGTH 33303 STATISTICS Number of nucleotides: 4274642 Number of protein genes: 4240 Number of RNA genes: 61 REFERENCE PMID:15520287 AUTHORS Baliga NS, et al. TITLE Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea. JOURNAL Genome Res 14:2221-34 (2004) /// ENTRY T00212 Complete Genome NAME stc, S.thermophilus_CNRZ, STRT1, 299768 DEFINITION Streptococcus thermophilus CNRZ1066 ANNOTATION manual TAXONOMY TAX:299768 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB INRA CHROMOSOME Circular SEQUENCE RS:NC_006449 LENGTH 1796226 STATISTICS Number of nucleotides: 1796226 Number of protein genes: 1915 Number of RNA genes: 85 REFERENCE PMID:15543133 AUTHORS Bolotin A, et al. TITLE Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus. JOURNAL Nat Biotechnol 22:1554-8 (2004) /// ENTRY T00213 Complete Genome NAME stl, S.thermophilus_LMG, STRT2, 264199 DEFINITION Streptococcus thermophilus LMG18311 ANNOTATION manual TAXONOMY TAX:264199 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB INRA UCL CHROMOSOME Circular SEQUENCE RS:NC_006448 LENGTH 1796846 STATISTICS Number of nucleotides: 1796846 Number of protein genes: 1889 Number of RNA genes: 85 REFERENCE PMID:15543133 AUTHORS Bolotin A, et al. TITLE Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus. JOURNAL Nat Biotechnol 22:1554-8 (2004) /// ENTRY T00214 Complete Genome NAME ftu, F.tularensis, FRATT, 177416 DEFINITION Francisella tularensis subsp. tularensis Schu 4 ANNOTATION manual TAXONOMY TAX:177416 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella DATA_SOURCE RefSeq ORIGINAL_DB DSTL UK DISEASE Tularemia CHROMOSOME Circular SEQUENCE RS:NC_006570 LENGTH 1892775 STATISTICS Number of nucleotides: 1892775 Number of protein genes: 1604 Number of RNA genes: 48 REFERENCE PMID:15640799 AUTHORS Larsson P, et al. TITLE The complete genome sequence of Francisella tularensis, the causative agent of tularemia. JOURNAL Nat Genet 37:153-9 (2005) /// ENTRY T00215 Complete Genome NAME sil, S.pomeroyi, SILPO, 246200 DEFINITION Silicibacter pomeroyi DSS-3 ANNOTATION manual TAXONOMY TAX:246200 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria DATA_SOURCE RefSeq ORIGINAL_DB RoseoBase CHROMOSOME Circular SEQUENCE RS:NC_003911 LENGTH 4109442 PLASMID megaplasmid; Circular SEQUENCE RS:NC_006569 LENGTH 491611 STATISTICS Number of nucleotides: 4601053 Number of protein genes: 4252 Number of RNA genes: 64 REFERENCE PMID:15602564 AUTHORS Moran MA, et al. TITLE Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. JOURNAL Nature 432:910-3 (2004) /// ENTRY T00216 Complete Genome NAME ama, A.marginale, ANAMM, 234826 DEFINITION Anaplasma marginale St. Maries ANNOTATION manual TAXONOMY TAX:234826 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma DATA_SOURCE RefSeq ORIGINAL_DB WSU DISEASE Bovine anaplasmosis CHROMOSOME Circular SEQUENCE RS:NC_004842 LENGTH 1197687 STATISTICS Number of nucleotides: 1197687 Number of protein genes: 948 Number of RNA genes: 40 REFERENCE PMID:15618402 AUTHORS Brayton KA, et al. TITLE Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins. JOURNAL Proc Natl Acad Sci U S A 102:844-9 (2005) /// ENTRY T00217 Complete Genome NAME gka, G.kaustophilus, GEOKA, 235909 DEFINITION Geobacillus kaustophilus HTA426 ANNOTATION manual TAXONOMY TAX:235909 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Geobacillus DATA_SOURCE RefSeq ORIGINAL_DB JAMSTEC CHROMOSOME Circular SEQUENCE RS:NC_006510 LENGTH 3544776 PLASMID pHTA426; Circular SEQUENCE RS:NC_006509 LENGTH 47890 STATISTICS Number of nucleotides: 3592666 Number of protein genes: 3539 Number of RNA genes: 114 REFERENCE PMID:15576355 AUTHORS Takami H, et al. TITLE Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus. JOURNAL Nucleic Acids Res 32:6292-303 (2004) /// ENTRY T00218 Complete Genome NAME ilo, I.loihiensis, IDILO, 283942 DEFINITION Idiomarina loihiensis L2TR ANNOTATION manual TAXONOMY TAX:283942 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina DATA_SOURCE RefSeq ORIGINAL_DB Hawaii CHROMOSOME Circular SEQUENCE RS:NC_006512 LENGTH 2839318 STATISTICS Number of nucleotides: 2839318 Number of protein genes: 2628 Number of RNA genes: 71 REFERENCE PMID:15596722 AUTHORS Hou S, et al. TITLE Genome sequence of the deep-sea {gamma}-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy. JOURNAL Proc Natl Acad Sci U S A 101:18036-18041 (2004) /// ENTRY T00219 Complete Genome NAME spt, S.enterica_Paratyphi, SALPA, 295319 DEFINITION Salmonella enterica subsp. enterica serovar Paratyphi A ATCC 9150 ANNOTATION manual TAXONOMY TAX:295319 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella DATA_SOURCE RefSeq ORIGINAL_DB SKCC DISEASE Paratyphoid fever CHROMOSOME Circular SEQUENCE RS:NC_006511 LENGTH 4585229 STATISTICS Number of nucleotides: 4585229 Number of protein genes: 4092 Number of RNA genes: 140 REFERENCE PMID:15531882 AUTHORS McClelland M, et al. TITLE Comparison of genome degradation in Paratyphi A and Typhi, human- restricted serovars of Salmonella enterica that cause typhoid. JOURNAL Nat Genet 36:1268-74 (2004) /// ENTRY T00220 Complete Genome NAME ttj, T.thermophilus_HB8, THET8, 300852 DEFINITION Thermus thermophilus HB8 ANNOTATION manual TAXONOMY TAX:300852 LINEAGE Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus DATA_SOURCE RefSeq ORIGINAL_DB Riken Harima CHROMOSOME Circular SEQUENCE RS:NC_006461 LENGTH 1849742 PLASMID pTT27; Circular SEQUENCE RS:NC_006462 LENGTH 256992 PLASMID pTT8; Circular SEQUENCE RS:NC_006463 LENGTH 9322 STATISTICS Number of nucleotides: 2116056 Number of protein genes: 2238 Number of RNA genes: 53 /// ENTRY T00221 Complete Genome NAME zmo, Z.mobilis, ZYMMO, 264203 DEFINITION Zymomonas mobilis subsp. mobilis ZM4 ANNOTATION manual TAXONOMY TAX:264203 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas DATA_SOURCE RefSeq ORIGINAL_DB Macrogen COMMENT Ethanologenic microorganism of interest for the production of fuel ethanol CHROMOSOME Circular SEQUENCE RS:NC_006526 LENGTH 2056363 STATISTICS Number of nucleotides: 2056363 Number of protein genes: 1728 Number of RNA genes: 60 REFERENCE PMID:15592456 AUTHORS Seo JS, et al. TITLE The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4. JOURNAL Nat Biotechnol 23:63-8 (2005) /// ENTRY T00222 Complete Genome NAME eba, Azoarcus_EbN1, AZOSE, 76114 DEFINITION Aromatoleum aromaticum EbN1 ANNOTATION manual TAXONOMY TAX:76114 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum DATA_SOURCE RefSeq ORIGINAL_DB Max Planck COMMENT Aerobic degrader of aromatic and other refractory compounds in anoxic waters CHROMOSOME Circular SEQUENCE RS:NC_006513 LENGTH 4296230 PLASMID p1; Circular SEQUENCE RS:NC_006823 LENGTH 207355 PLASMID p2; Circular SEQUENCE RS:NC_006824 LENGTH 223670 STATISTICS Number of nucleotides: 4727255 Number of protein genes: 4590 Number of RNA genes: 70 REFERENCE PMID:15551059 AUTHORS Rabus R, et al. TITLE The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1. JOURNAL Arch Microbiol 183:27-36 (2005) /// ENTRY T00223 Complete Genome NAME det, D.ethenogenes, DEHE1, 243164 DEFINITION Dehalococcoides ethenogenes 195 ANNOTATION manual TAXONOMY TAX:243164 LINEAGE Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR COMMENT Only bacterium known to reductively dechlorinates the groundwater pollutants, tetrachloroethene and trichloroethene, to ethene CHROMOSOME Circular SEQUENCE RS:NC_002936 LENGTH 1469720 STATISTICS Number of nucleotides: 1469720 Number of protein genes: 1580 Number of RNA genes: 51 REFERENCE PMID:15637277 AUTHORS Seshadri R, et al. TITLE Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. JOURNAL Science 307:105-8 (2005) /// ENTRY T00224 Complete Genome NAME eru, E.ruminantium, EHRRW, 254945 DEFINITION Ehrlichia ruminantium Welgevonden (South Africa) ANNOTATION manual TAXONOMY TAX:254945 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia DATA_SOURCE RefSeq ORIGINAL_DB Pretoria Sanger DISEASE Heartwater CHROMOSOME Circular SEQUENCE RS:NC_005295 LENGTH 1516355 STATISTICS Number of nucleotides: 1516355 Number of protein genes: 888 Number of RNA genes: 41 REFERENCE PMID:15637156 AUTHORS Collins NE, et al. TITLE The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number. JOURNAL Proc Natl Acad Sci U S A 102:838-43 (2005) /// ENTRY T00225 Complete Genome NAME sac, S.aureus_COL, STAAC, 93062 DEFINITION Staphylococcus aureus subsp. aureus COL, methicillin-resistant ANNOTATION manual TAXONOMY TAX:93062 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Toxic-shock syndrome and staphylococcal scarlet fever CHROMOSOME Circular SEQUENCE RS:NC_002951 LENGTH 2809422 PLASMID pT181 SEQUENCE RS:NC_006629 LENGTH 4440 STATISTICS Number of nucleotides: 2813862 Number of protein genes: 2615 Number of RNA genes: 72 REFERENCE PMID:15774886 AUTHORS Gill SR, et al. TITLE Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. JOURNAL J Bacteriol 187:2426-38 (2005) /// ENTRY T00226 Complete Genome NAME tko, T.kodakaraensis, PYRKO, 69014 DEFINITION Thermococcus kodakaraensis KOD1 ANNOTATION manual TAXONOMY TAX:69014 LINEAGE Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus DATA_SOURCE RefSeq ORIGINAL_DB Kyoto U CHROMOSOME Circular SEQUENCE RS:NC_006624 LENGTH 2088737 STATISTICS Number of nucleotides: 2088737 Number of protein genes: 2306 Number of RNA genes: 52 REFERENCE PMID:15710748 AUTHORS Fukui T, et al. TITLE Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. JOURNAL Genome Res 15:352-63 (2005) /// ENTRY T00227 Complete Genome NAME cjr, C.jejuni_RM1221, CAMJR, 195099 DEFINITION Campylobacter jejuni RM1221 ANNOTATION manual TAXONOMY TAX:195099 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Food poisoning, Guillain-Barre syndromes, Miller-Fisher syndromes CHROMOSOME Circular SEQUENCE RS:NC_003912 LENGTH 1777831 STATISTICS Number of nucleotides: 1777831 Number of protein genes: 1838 Number of RNA genes: 56 REFERENCE PMID:15660156 AUTHORS Fouts DE, et al. TITLE Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species. JOURNAL PLoS Biol 3:e15 (2005) /// ENTRY T00228 Complete Genome NAME bcl, B.clausii, BACSK, 66692 DEFINITION Bacillus clausii KSM-K16 ANNOTATION manual TAXONOMY TAX:66692 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus DATA_SOURCE RefSeq ORIGINAL_DB Kao COMMENT Probiotic strains, antimicrobial and immunomodulatory activities. CHROMOSOME Circular SEQUENCE RS:NC_006582 LENGTH 4303871 STATISTICS Number of nucleotides: 4303871 Number of protein genes: 4096 Number of RNA genes: 96 /// ENTRY T00229 Complete Genome NAME ser, S.epidermidis_RP62A, STAEQ, 176279 DEFINITION Staphylococcus epidermidis RP62A ANNOTATION manual TAXONOMY TAX:176279 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_002976 LENGTH 2616530 PLASMID pSERP; Circular SEQUENCE RS:NC_006663 LENGTH 27310 STATISTICS Number of nucleotides: 2643840 Number of protein genes: 2525 Number of RNA genes: 81 REFERENCE PMID:15774886 AUTHORS Gill SR, et al. TITLE Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. JOURNAL J Bacteriol 187:2426-38 (2005) /// ENTRY T00230 Complete Genome NAME gox, G.oxydans, GLUOX, 290633 DEFINITION Gluconobacter oxydans 621H ANNOTATION manual TAXONOMY TAX:290633 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter DATA_SOURCE RefSeq ORIGINAL_DB Goettingen CHROMOSOME Circular SEQUENCE RS:NC_006677 LENGTH 2702173 PLASMID pGOX1; Circular SEQUENCE RS:NC_006672 LENGTH 163186 PLASMID pGOX2; Circular SEQUENCE RS:NC_006673 LENGTH 26568 PLASMID pGOX3; Circular SEQUENCE RS:NC_006674 LENGTH 14547 PLASMID pGOX4; Circular SEQUENCE RS:NC_006675 LENGTH 13223 PLASMID pGOX5; Circular SEQUENCE RS:NC_006676 LENGTH 2687 STATISTICS Number of nucleotides: 2922384 Number of protein genes: 2664 Number of RNA genes: 67 REFERENCE PMID:15665824 AUTHORS Prust C, et al. TITLE Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. JOURNAL Nat Biotechnol 23:195-200 (2005) /// ENTRY T00231 Complete Genome NAME lac, L.acidophilus, LACAC, 272621 DEFINITION Lactobacillus acidophilus NCFM ANNOTATION manual TAXONOMY TAX:272621 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB North Carolina CHROMOSOME Circular SEQUENCE RS:NC_006814 LENGTH 1993560 STATISTICS Number of nucleotides: 1993560 Number of protein genes: 1862 Number of RNA genes: 74 REFERENCE PMID:15671160 AUTHORS Altermann E, et al. TITLE Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. JOURNAL Proc Natl Acad Sci U S A 102:3906-12 (2005) /// ENTRY T00232 Complete Genome NAME erg, E.ruminantium_Gardel, EHRRG, 302409 DEFINITION Ehrlichia ruminantium Gardel ANNOTATION manual TAXONOMY TAX:302409 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia DATA_SOURCE RefSeq ORIGINAL_DB Montpellier DISEASE Heartwater CHROMOSOME Circular SEQUENCE RS:NC_006831 LENGTH 1499920 STATISTICS Number of nucleotides: 1499920 Number of protein genes: 950 Number of RNA genes: 39 REFERENCE PMID:16547041 AUTHORS Frutos R, et al. TITLE Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity. JOURNAL J Bacteriol 188:2533-42 (2006) /// ENTRY T00233 Complete Genome NAME erw, E.ruminantium_Welgevonden, EHRRW, 254945 DEFINITION Ehrlichia ruminantium Welgevonden (France) ANNOTATION manual TAXONOMY TAX:254945 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia DATA_SOURCE RefSeq ORIGINAL_DB Montpellier DISEASE Heartwater CHROMOSOME Circular SEQUENCE RS:NC_006832 LENGTH 1512977 STATISTICS Number of nucleotides: 1512977 Number of protein genes: 958 Number of RNA genes: 39 REFERENCE PMID:16547041 AUTHORS Frutos R, et al. TITLE Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity. JOURNAL J Bacteriol 188:2533-42 (2006) /// ENTRY T00234 Complete Genome NAME wbm, Wolbachia_Bma, WOLTR, 292805 DEFINITION Wolbachia wBm, endosymbiont of Brugia malayi TRS ANNOTATION manual TAXONOMY TAX:292805 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Wolbachieae; Wolbachia DATA_SOURCE RefSeq ORIGINAL_DB Montpellier NEB CHROMOSOME Circular SEQUENCE RS:NC_006833 LENGTH 1080084 STATISTICS Number of nucleotides: 1080084 Number of protein genes: 805 Number of RNA genes: 37 REFERENCE PMID:15780005 AUTHORS Foster J, et al. TITLE The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode. JOURNAL PLoS Biol 3:e121 (2005) /// ENTRY T00235 Complete Genome NAME xoo, X.oryzae, XANOR, 291331 DEFINITION Xanthomonas oryzae pv. oryzae KACC10331 ANNOTATION manual TAXONOMY TAX:291331 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas DATA_SOURCE RefSeq ORIGINAL_DB NIAB Korea DISEASE Rice bacterial blight disease CHROMOSOME Circular SEQUENCE RS:NC_006834 LENGTH 4941439 STATISTICS Number of nucleotides: 4941439 Number of protein genes: 4062 Number of RNA genes: 60 REFERENCE PMID:15673718 AUTHORS Lee BM, et al. TITLE The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice. JOURNAL Nucleic Acids Res 33:577-86 (2005) /// ENTRY T00236 Complete Genome NAME vfi, V.fischeri, VIBF1, 312309 DEFINITION Vibrio fischeri ES114 ANNOTATION manual TAXONOMY TAX:312309 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio DATA_SOURCE RefSeq ORIGINAL_DB Hawaii CHROMOSOME I; Circular SEQUENCE RS:NC_006840 LENGTH 2897536 CHROMOSOME II; Circular SEQUENCE RS:NC_006841 LENGTH 1330333 PLASMID pES100; Circular SEQUENCE RS:NC_006842 LENGTH 45849 STATISTICS Number of nucleotides: 4273718 Number of protein genes: 3817 Number of RNA genes: 165 REFERENCE PMID:15703294 AUTHORS Ruby EG, et al. TITLE Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners. JOURNAL Proc Natl Acad Sci U S A 102:3004-9 (2005) /// ENTRY T00237 Complete Genome NAME ngo, N.gonorrhoeae, NEIG1, 242231 DEFINITION Neisseria gonorrhoeae FA 1090 ANNOTATION manual TAXONOMY TAX:242231 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria DATA_SOURCE RefSeq ORIGINAL_DB Oklahoma DISEASE Gonorrhea CHROMOSOME Circular SEQUENCE RS:NC_002946 LENGTH 2153922 STATISTICS Number of nucleotides: 2153922 Number of protein genes: 2002 Number of RNA genes: 67 /// ENTRY T00238 Complete Genome NAME ehi, E.histolytica, ENTHI, 294381 DEFINITION Entamoeba histolytica ANNOTATION manual TAXONOMY TAX:294381 LINEAGE Eukaryota; Amoebozoa; Archamoebae; Entamoebidae; Entamoeba DATA_SOURCE RefSeq ORIGINAL_DB TIGR JCVI-Pathema DISEASE Amoebiasis STATISTICS Number of protein genes: 8162 REFERENCE PMID:15729342 AUTHORS Loftus B, et al. TITLE The genome of the protist parasite Entamoeba histolytica. JOURNAL Nature 433:865-8 (2005) /// ENTRY T00239 Complete Genome NAME bfs, B.fragilis_NCTC9343, BACFN, 272559 DEFINITION Bacteroides fragilis NCTC 9343 ANNOTATION manual TAXONOMY TAX:272559 LINEAGE Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Severe infection, diarrhea, and abscesses CHROMOSOME Circular SEQUENCE RS:NC_003228 LENGTH 5205140 PLASMID pBF9343; Circular SEQUENCE RS:NC_006873 LENGTH 36560 STATISTICS Number of nucleotides: 5241700 Number of protein genes: 4231 Number of RNA genes: 92 REFERENCE PMID:15746427 AUTHORS Cerdeno-Tarraga AM, et al. TITLE Extensive DNA inversions in the B. fragilis genome control variable gene expression. JOURNAL Science 307:1463-5 (2005) /// ENTRY T00240 Complete Genome NAME sec, S.enterica_Choleraesuis, SALCH, 321314 DEFINITION Salmonella enterica subsp. enterica serovar Choleraesuis ANNOTATION manual TAXONOMY TAX:321314 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Choleraesuis DATA_SOURCE RefSeq ORIGINAL_DB Chang-Gung DISEASE Salmonellosis, swine paratyphoid CHROMOSOME Circular SEQUENCE RS:NC_006905 LENGTH 4755700 PLASMID pSC138; Circular SEQUENCE RS:NC_006856 LENGTH 138742 PLASMID pSCV50; Circular SEQUENCE RS:NC_006855 LENGTH 49558 STATISTICS Number of nucleotides: 4944000 Number of protein genes: 4630 Number of RNA genes: 107 REFERENCE PMID:15781495 AUTHORS Chiu CH, et al. TITLE The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen. JOURNAL Nucleic Acids Res 33:1690-8 (2005) /// ENTRY T00241 Complete Genome NAME bmb, B.abortus, BRUAB, 262698 DEFINITION Brucella abortus 9-941 (biovar 1) ANNOTATION manual TAXONOMY TAX:262698 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB U Minnesota DISEASE Brucellosis CHROMOSOME I; Circular SEQUENCE RS:NC_006932 LENGTH 2124241 CHROMOSOME II; Circular SEQUENCE RS:NC_006933 LENGTH 1162204 STATISTICS Number of nucleotides: 3286445 Number of protein genes: 3084 Number of RNA genes: 64 REFERENCE PMID:15805518 AUTHORS Halling SM, et al. TITLE Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis. JOURNAL J Bacteriol 187:2715-26 (2005) /// ENTRY T00242 Complete Genome NAME cab, C.abortus, CHLAB, 218497 DEFINITION Chlamydophila abortus S26/3 ANNOTATION manual TAXONOMY TAX:218497 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila DATA_SOURCE RefSeq ORIGINAL_DB GeneDB Sanger DISEASE Late gestation abortions in ruminants and pigs CHROMOSOME Circular SEQUENCE RS:NC_004552 LENGTH 1144377 STATISTICS Number of nucleotides: 1144377 Number of protein genes: 932 Number of RNA genes: 42 REFERENCE PMID:15837807 AUTHORS Thomson NR, et al. TITLE The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation. JOURNAL Genome Res 15:629-40 (2005) /// ENTRY T00243 Complete Genome NAME cne, C.neoformans, CRYNE, 214684 DEFINITION Cryptococcus neoformans JEC21 (Filobasidiella neoformans JEC21) ANNOTATION manual TAXONOMY TAX:214684 LINEAGE Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; Filobasidiella/Cryptococcus neoformans species complex DATA_SOURCE RefSeq ORIGINAL_DB TIGR DISEASE Opportunistic cryptococcosis STATISTICS Number of protein genes: 6273 REFERENCE PMID:15653466 AUTHORS Loftus BJ, et al. TITLE The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. JOURNAL Science 307:1321-4 (2005) /// ENTRY T00244 Complete Genome NAME cgb, C.glutamicum_B, CORGL, 196627 DEFINITION Corynebacterium glutamicum ATCC 13032 (Bielefeld) ANNOTATION manual TAXONOMY TAX:196627 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld COMMENT Well-known bacteria in industry for the production of amino acids CHROMOSOME Circular SEQUENCE RS:NC_006958 LENGTH 3282708 STATISTICS Number of nucleotides: 3282708 Number of protein genes: 3057 Number of RNA genes: 80 REFERENCE PMID:12948626 AUTHORS Kalinowski J, et al. TITLE The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. JOURNAL J Biotechnol 104:5-25 (2003) /// ENTRY T00245 Complete Genome NAME ddi, D.discoideum, DICDI, 352472 DEFINITION Dictyostelium discoideum ANNOTATION manual TAXONOMY TAX:352472 LINEAGE Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium DATA_SOURCE RefSeq ORIGINAL_DB dictyBase STATISTICS Number of protein genes: 13437 Number of RNA genes: 21 REFERENCE PMID:15875012 AUTHORS Eichinger L, et al. TITLE The genome of the social amoeba Dictyostelium discoideum. JOURNAL Nature 435:43-57 (2005) /// ENTRY T00246 Complete Genome NAME psb, P.syringae_B728a, PSEU2, 205918 DEFINITION Pseudomonas syringae pv. syringae B728a ANNOTATION manual TAXONOMY TAX:205918 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Plant rot CHROMOSOME Circular SEQUENCE RS:NC_007005 LENGTH 6093698 STATISTICS Number of nucleotides: 6093698 Number of protein genes: 5089 Number of RNA genes: 83 REFERENCE PMID:16043691 AUTHORS Feil H, et al. TITLE Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. JOURNAL Proc Natl Acad Sci U S A 102:11064-9 (2005) /// ENTRY T00247 Complete Genome NAME xcb, X.campestris_B, XANC8, 314565 DEFINITION Xanthomonas campestris pv. campestris 8004 (Beijing) ANNOTATION manual TAXONOMY TAX:314565 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas DATA_SOURCE RefSeq ORIGINAL_DB Beijing DISEASE Crucifer black rot disease CHROMOSOME Circular SEQUENCE RS:NC_007086 LENGTH 5148708 STATISTICS Number of nucleotides: 5148708 Number of protein genes: 4271 Number of RNA genes: 60 REFERENCE PMID:15899963 AUTHORS Qian W, et al. TITLE Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. JOURNAL Genome Res 15:757-67 (2005) /// ENTRY T00248 Complete Genome NAME hit, H.influenzae_NT, HAEI8, 281310 DEFINITION Haemophilus influenzae 86-028NP (nontypeable) ANNOTATION manual TAXONOMY TAX:281310 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus DATA_SOURCE RefSeq ORIGINAL_DB Ohio COMMENT Nonpathogenic stereotype of H. influenzae CHROMOSOME Circular SEQUENCE RS:NC_007146 LENGTH 1914490 STATISTICS Number of nucleotides: 1914490 Number of protein genes: 1792 Number of RNA genes: 77 REFERENCE PMID:15968074 AUTHORS Harrison A, et al. TITLE Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20. JOURNAL J Bacteriol 187:4627-36 (2005) /// ENTRY T00249 Complete Genome NAME pfl, P.fluorescens, PSEF5, 220664 DEFINITION Pseudomonas fluorescens Pf-5 ANNOTATION manual TAXONOMY TAX:220664 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR COMMENT Plant commensal bacterium that inhabits the rhizosphere and produces secondary metabolites that suppress soilborne plant pathogens CHROMOSOME Circular SEQUENCE RS:NC_004129 LENGTH 7074893 STATISTICS Number of nucleotides: 7074893 Number of protein genes: 6138 Number of RNA genes: 88 REFERENCE PMID:15980861 AUTHORS Paulsen IT, et al. TITLE Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. JOURNAL Nat Biotechnol 23:873-8 (2005) /// ENTRY T00250 Complete Genome NAME sha, S.haemolyticus, STAHJ, 279808 DEFINITION Staphylococcus haemolyticus JCSC1435 ANNOTATION manual TAXONOMY TAX:279808 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB NITE/Juntendo DISEASE Opportunistic infections CHROMOSOME Circular SEQUENCE RS:NC_007168 LENGTH 2685015 PLASMID pSHaeA; Circular SEQUENCE RS:NC_007169 LENGTH 2300 PLASMID pSHaeB; Circular SEQUENCE RS:NC_007170 LENGTH 2366 PLASMID pSHaeC; Circular SEQUENCE RS:NC_007171 LENGTH 8180 STATISTICS Number of nucleotides: 2697861 Number of protein genes: 2692 Number of RNA genes: 76 REFERENCE PMID:16237012 AUTHORS Takeuchi F, et al. TITLE Whole-genome sequencing of staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human- colonizing staphylococcal species. JOURNAL J Bacteriol 187:7292-308 (2005) /// ENTRY T00251 Complete Genome NAME sai, S.acidocaldarius, SULAC, 330779 DEFINITION Sulfolobus acidocaldarius DSM 639 ANNOTATION manual TAXONOMY TAX:330779 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB Univ. of Copenhagen CHROMOSOME Circular SEQUENCE RS:NC_007181 LENGTH 2225959 STATISTICS Number of nucleotides: 2225959 Number of protein genes: 2223 Number of RNA genes: 82 REFERENCE PMID:15995215 AUTHORS Chen L, et al. TITLE The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. JOURNAL J Bacteriol 187:4992-9 (2005) /// ENTRY T00252 Complete Genome NAME rfe, R.felis, RICFE, 315456 DEFINITION Rickettsia felis URRWXCal2 ANNOTATION manual TAXONOMY TAX:315456 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group DATA_SOURCE RefSeq ORIGINAL_DB CNRS Marseille DISEASE Flea-borne spotted fever rickettsiosis CHROMOSOME Circular SEQUENCE RS:NC_007109 LENGTH 1485148 PLASMID pRF; Circular SEQUENCE RS:NC_007110 LENGTH 62829 PLASMID pRFdelta; Circular SEQUENCE RS:NC_007111 LENGTH 39263 STATISTICS Number of nucleotides: 1587240 Number of protein genes: 1512 Number of RNA genes: 39 REFERENCE PMID:15984913 AUTHORS Ogata H, et al. TITLE The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. JOURNAL PLoS Biol 3:e248 (2005) /// ENTRY T00253 Complete Genome NAME tan, T.annulata, THEAN, 353154 DEFINITION Theileria annulata Ankara ANNOTATION manual TAXONOMY TAX:353154 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Piroplasmida; Theileriidae; Theileria DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Tropical bovine theileriosis STATISTICS Number of protein genes: 3792 REFERENCE PMID:15994557 AUTHORS Pain A, et al. TITLE Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. JOURNAL Science 309:131-3 (2005) /// ENTRY T00254 Complete Genome NAME tpv, T.parva, THEPA, 333668 DEFINITION Theileria parva Muguga ANNOTATION manual TAXONOMY TAX:333668 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Piroplasmida; Theileriidae; Theileria DATA_SOURCE RefSeq ORIGINAL_DB TIGR DISEASE East Coast fever in cattle STATISTICS Number of protein genes: 4061 Number of RNA genes: 26 REFERENCE PMID:15994558 AUTHORS Gardner MJ, et al. TITLE Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. JOURNAL Science 309:134-7 (2005) /// ENTRY T00255 Complete Genome NAME cjk, C.jeikeium, CORJK, 306537 DEFINITION Corynebacterium jeikeium K411 ANNOTATION manual TAXONOMY TAX:306537 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld DISEASE Nosocomial Corynebacterium infections CHROMOSOME Circular SEQUENCE RS:NC_007164 LENGTH 2462499 PLASMID pKW4; Circular SEQUENCE RS:NC_003080 LENGTH 14323 STATISTICS Number of nucleotides: 2476822 Number of protein genes: 2120 Number of RNA genes: 61 REFERENCE PMID:15968079 AUTHORS Tauch A, et al. TITLE Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid- requiring bacterium of the human skin flora. JOURNAL J Bacteriol 187:4671-82 (2005) /// ENTRY T00256 Complete Genome NAME par, P.arcticum, PSYA2, 259536 DEFINITION Psychrobacter arcticum 273-4 ANNOTATION manual TAXONOMY TAX:259536 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007204 LENGTH 2650701 STATISTICS Number of nucleotides: 2650701 Number of protein genes: 2120 Number of RNA genes: 64 REFERENCE PMID:20154119 AUTHORS Ayala-del-Rio HL, et al. TITLE The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth. JOURNAL Appl Environ Microbiol 76:2304-12 (2010) /// ENTRY T00257 Complete Genome NAME pub, P.ubique, PELUB, 335992 DEFINITION Candidatus Pelagibacter ubique HTCC1062 ANNOTATION manual TAXONOMY TAX:335992 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; SAR11 cluster; Candidatus Pelagibacter DATA_SOURCE RefSeq ORIGINAL_DB Oregon State U COMMENT Heterotrophic marine bacteria with the smallest genome among the clades CHROMOSOME Circular SEQUENCE RS:NC_007205 LENGTH 1308759 STATISTICS Number of nucleotides: 1308759 Number of protein genes: 1354 Number of RNA genes: 35 REFERENCE PMID:16109880 AUTHORS Giovannoni SJ, et al. TITLE Genome streamlining in a cosmopolitan oceanic bacterium. JOURNAL Science 309:1242-5 (2005) /// ENTRY T00258 Complete Genome NAME cps, C.psychrerythraea, COLP3, 167879 DEFINITION Colwellia psychrerythraea 34H ANNOTATION manual TAXONOMY TAX:167879 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR COMMENT Marine psychrophilic bacterium CHROMOSOME Circular SEQUENCE RS:NC_003910 LENGTH 5373180 STATISTICS Number of nucleotides: 5373180 Number of protein genes: 4910 Number of RNA genes: 117 REFERENCE PMID:16043709 AUTHORS Methe BA, et al. TITLE The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. JOURNAL Proc Natl Acad Sci U S A 102:10913-8 (2005) /// ENTRY T00259 Complete Genome NAME dar, D.aromatica, DECAR, 159087 DEFINITION Dechloromonas aromatica RCB ANNOTATION manual TAXONOMY TAX:159087 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas DATA_SOURCE RefSeq ORIGINAL_DB JGI COMMENT Perchlorate-reducing bacterium CHROMOSOME Circular SEQUENCE RS:NC_007298 LENGTH 4501104 STATISTICS Number of nucleotides: 4501104 Number of protein genes: 4171 Number of RNA genes: 78 /// ENTRY T00260 Complete Genome NAME mhj, M.hyopneumoniae_J, MYCHJ, 262719 DEFINITION Mycoplasma hyopneumoniae J ANNOTATION manual TAXONOMY TAX:262719 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB LNCC Brazil COMMENT Nonpathogenic stereotype of M. hyopneumoniae CHROMOSOME Circular SEQUENCE RS:NC_007295 LENGTH 897405 STATISTICS Number of nucleotides: 897405 Number of protein genes: 657 Number of RNA genes: 33 REFERENCE PMID:16077101 AUTHORS Vasconcelos AT, et al. TITLE Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. JOURNAL J Bacteriol 187:5568-77 (2005) /// ENTRY T00261 Complete Genome NAME msy, M.synoviae, MYCS5, 262723 DEFINITION Mycoplasma synoviae 53 ANNOTATION manual TAXONOMY TAX:262723 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB LNCC Brazil DISEASE Chronic respiratory disease in chicken CHROMOSOME Circular SEQUENCE RS:NC_007294 LENGTH 799476 STATISTICS Number of nucleotides: 799476 Number of protein genes: 659 Number of RNA genes: 41 REFERENCE PMID:16077101 AUTHORS Vasconcelos AT, et al. TITLE Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. JOURNAL J Bacteriol 187:5568-77 (2005) /// ENTRY T00262 Complete Genome NAME spz, S.pyogenes_MGAS5005, STRP1, 293653 DEFINITION Streptococcus pyogenes MGAS5005 (serotype M1) ANNOTATION manual TAXONOMY TAX:293653 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML DISEASE Pharyngitis, cellulitis, scarlet fever, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_007297 LENGTH 1838554 STATISTICS Number of nucleotides: 1838554 Number of protein genes: 1865 Number of RNA genes: 85 REFERENCE PMID:16088826 AUTHORS Sumby P, et al. TITLE Evolutionary origin and emergence of a highly successful clone of serotype M1 group a Streptococcus involved multiple horizontal gene transfer events. JOURNAL J Infect Dis 192:771-82 (2005) /// ENTRY T00263 Complete Genome NAME spb, S.pyogenes_MGAS6180, STRPM, 319701 DEFINITION Streptococcus pyogenes MGAS6180 (serotype M28) ANNOTATION manual TAXONOMY TAX:319701 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML DISEASE Pharyngitis, cellulitis, scarlet fever, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_007296 LENGTH 1897573 STATISTICS Number of nucleotides: 1897573 Number of protein genes: 1894 Number of RNA genes: 83 REFERENCE PMID:16088825 AUTHORS Green NM, et al. TITLE Genome sequence of a serotype M28 strain of group a streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity. JOURNAL J Infect Dis 192:760-70 (2005) /// ENTRY T00264 Complete Genome NAME mhp, M.hyopneumoniae_7448, MYCH7, 262722 DEFINITION Mycoplasma hyopneumoniae 7448 ANNOTATION manual TAXONOMY TAX:262722 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB LNCC Brazil DISEASE Enzootic pneumonia CHROMOSOME Circular SEQUENCE RS:NC_007332 LENGTH 920079 STATISTICS Number of nucleotides: 920079 Number of protein genes: 657 Number of RNA genes: 33 REFERENCE PMID:16077101 AUTHORS Vasconcelos AT, et al. TITLE Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. JOURNAL J Bacteriol 187:5568-77 (2005) /// ENTRY T00265 Complete Genome NAME tfu, T.fusca, THEFY, 269800 DEFINITION Thermobifida fusca YX ANNOTATION manual TAXONOMY TAX:269800 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptosporangineae; Nocardiopsaceae; Thermobifida DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007333 LENGTH 3642249 STATISTICS Number of nucleotides: 3642249 Number of protein genes: 3110 Number of RNA genes: 66 REFERENCE PMID:17209016 AUTHORS Lykidis A, et al. TITLE Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX. JOURNAL J Bacteriol 189:2477-86 (2007) /// ENTRY T00266 Complete Genome NAME psp, P.syringae_phaseolicola, PSE14, 264730 DEFINITION Pseudomonas syringae pv. phaseolicola 1448A ANNOTATION manual TAXONOMY TAX:264730 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas savastanoi DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Halo blight of bean CHROMOSOME Circular SEQUENCE RS:NC_005773 LENGTH 5928787 PLASMID Large; Circular SEQUENCE RS:NC_007274 LENGTH 131950 PLASMID Small; Circular SEQUENCE RS:NC_007275 LENGTH 51711 STATISTICS Number of nucleotides: 6112448 Number of protein genes: 5172 Number of RNA genes: 81 REFERENCE PMID:16159782 AUTHORS Joardar V, et al. TITLE Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. JOURNAL J Bacteriol 187:6488-98 (2005) /// ENTRY T00267 Complete Genome NAME pmn, P.marinus_NATL2A, PROMT, 59920 DEFINITION Prochlorococcus marinus NATL2A ANNOTATION manual TAXONOMY TAX:59920 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_007335 LENGTH 1842899 STATISTICS Number of nucleotides: 1842899 Number of protein genes: 2162 Number of RNA genes: 44 REFERENCE PMID:18159947 AUTHORS Kettler GC, et al. TITLE Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. JOURNAL PLoS Genet 3:e231 (2007) /// ENTRY T00268 Complete Genome NAME reu, R.eutropha, RALEJ, 264198 DEFINITION Ralstonia eutropha JMP134 ANNOTATION manual TAXONOMY TAX:264198 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus DATA_SOURCE RefSeq ORIGINAL_DB JGI COMMENT Facultative chemolithoautrophic hydrogen-oxidizing bacterium CHROMOSOME 1; Circular SEQUENCE RS:NC_007347 LENGTH 3806533 CHROMOSOME 2; Circular SEQUENCE RS:NC_007348 LENGTH 2726152 PLASMID mega; Circular SEQUENCE RS:NC_007336 LENGTH 634917 PLASMID p1; Circular SEQUENCE RS:NC_007337 LENGTH 87688 STATISTICS Number of nucleotides: 7255290 Number of protein genes: 6446 Number of RNA genes: 87 /// ENTRY T00269 Complete Genome NAME ssp, S.saprophyticus, STAS1, 342451 DEFINITION Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 ANNOTATION manual TAXONOMY TAX:342451 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB Kitasato DISEASE Urinary tract infections CHROMOSOME Circular SEQUENCE RS:NC_007350 LENGTH 2516575 PLASMID pSSP1; Circular SEQUENCE RS:NC_007351 LENGTH 38454 PLASMID pSSP2; Circular SEQUENCE RS:NC_007352 LENGTH 22870 STATISTICS Number of nucleotides: 2577899 Number of protein genes: 2514 Number of RNA genes: 80 REFERENCE PMID:16135568 AUTHORS Kuroda M, et al. TITLE Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection. JOURNAL Proc Natl Acad Sci U S A 102:13272-7 (2005) /// ENTRY T00270 Complete Genome NAME ecn, E.canis, EHRCJ, 269484 DEFINITION Ehrlichia canis Jake ANNOTATION manual TAXONOMY TAX:269484 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Ehrlichiosis CHROMOSOME Circular SEQUENCE RS:NC_007354 LENGTH 1315030 STATISTICS Number of nucleotides: 1315030 Number of protein genes: 925 Number of RNA genes: 41 REFERENCE PMID:16707693 AUTHORS Mavromatis K, et al. TITLE The genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies. JOURNAL J Bacteriol 188:4015-23 (2006) /// ENTRY T00271 Complete Genome NAME mba, M.barkeri, METBF, 269797 DEFINITION Methanosarcina barkeri fusaro, chromosome 1 ANNOTATION manual TAXONOMY TAX:269797 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_007355 LENGTH 4837408 PLASMID p1; Circular SEQUENCE RS:NC_007349 LENGTH 36358 STATISTICS Number of nucleotides: 4873766 Number of protein genes: 3624 Number of RNA genes: 73 REFERENCE PMID:16980466 AUTHORS Maeder DL, et al. TITLE The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes. JOURNAL J Bacteriol 188:7922-31 (2006) /// ENTRY T00272 Complete Genome NAME bpn, B.pennsylvanicus, BLOPB, 291272 DEFINITION Candidatus Blochmannia pennsylvanicus BPEN, endosymbiont of Camponotus pennsylvanicus (carpenter ant) ANNOTATION manual TAXONOMY TAX:291272 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; ant endosymbionts; Candidatus Blochmannia DATA_SOURCE RefSeq ORIGINAL_DB MBL COMMENT Ant associate endosymbiont CHROMOSOME Circular SEQUENCE RS:NC_007292 LENGTH 791654 STATISTICS Number of nucleotides: 791654 Number of protein genes: 610 Number of RNA genes: 44 REFERENCE PMID:16077009 AUTHORS Degnan PH, et al. TITLE Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects. JOURNAL Genome Res 15:1023-33 (2005) /// ENTRY T00273 Complete Genome NAME deh, Dehalococcoides_CBDB1, DEHSC, 255470 DEFINITION Dehalococcoides sp. CBDB1 ANNOTATION manual TAXONOMY TAX:255470 LINEAGE Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck CHROMOSOME Circular SEQUENCE RS:NC_007356 LENGTH 1395502 STATISTICS Number of nucleotides: 1395502 Number of protein genes: 1458 Number of RNA genes: 52 REFERENCE PMID:16116419 AUTHORS Kube M, et al. TITLE Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1. JOURNAL Nat Biotechnol 23:1269-73 (2005) /// ENTRY T00274 Complete Genome NAME ssn, S.sonnei, SHISS, 300269 DEFINITION Shigella sonnei Ss046 ANNOTATION manual TAXONOMY TAX:300269 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella DATA_SOURCE RefSeq ORIGINAL_DB ShiBASE China DISEASE Mucoid diarrhea CHROMOSOME Circular SEQUENCE RS:NC_007384 LENGTH 4825265 PLASMID pSS_046; Circular SEQUENCE RS:NC_007385 LENGTH 214396 PLASMID pSS046_spA; Circular SEQUENCE RS:NC_009345 LENGTH 8401 PLASMID pSS046_spB; Circular SEQUENCE RS:NC_009346 LENGTH 5153 PLASMID pSS046_spC; Circular SEQUENCE RS:NC_009347 LENGTH 2101 STATISTICS Number of nucleotides: 5055316 Number of protein genes: 4470 Number of RNA genes: 119 REFERENCE PMID:16122562 AUTHORS Jiang Y, et al. TITLE The complete sequence and analysis of the large virulence plasmid pSS of Shigella sonnei. JOURNAL Plasmid 54:149-59 (2005) REFERENCE PMID:16275786 AUTHORS Yang F, et al. TITLE Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. JOURNAL Nucleic Acids Res 33:6445-58 (2005) /// ENTRY T00275 Complete Genome NAME tbd, T.denitrificans, THIDA, 292415 DEFINITION Thiobacillus denitrificans ATCC 25259 ANNOTATION manual TAXONOMY TAX:292415 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007404 LENGTH 2909809 STATISTICS Number of nucleotides: 2909809 Number of protein genes: 2827 Number of RNA genes: 51 REFERENCE PMID:16452431 AUTHORS Beller HR, et al. TITLE The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans. JOURNAL J Bacteriol 188:1473-88 (2006) /// ENTRY T00276 Complete Genome NAME nwi, N.winogradskyi, NITWN, 323098 DEFINITION Nitrobacter winogradskyi Nb-255 ANNOTATION manual TAXONOMY TAX:323098 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007406 LENGTH 3402093 STATISTICS Number of nucleotides: 3402093 Number of protein genes: 3122 Number of RNA genes: 55 REFERENCE PMID:16517654 AUTHORS Starkenburg SR, et al. TITLE Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255. JOURNAL Appl Environ Microbiol 72:2050-63 (2006) /// ENTRY T00277 Complete Genome NAME ava, A.variabilis, ANAVT, 240292 DEFINITION Anabaena variabilis ATCC 29413 ANNOTATION manual TAXONOMY TAX:240292 LINEAGE Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_007413 LENGTH 6365727 PLASMID A; Circular SEQUENCE RS:NC_007410 LENGTH 366354 PLASMID B; Circular SEQUENCE RS:NC_007411 LENGTH 35762 PLASMID C; Circular SEQUENCE RS:NC_007412 LENGTH 300758 STATISTICS Number of nucleotides: 7068601 Number of protein genes: 5661 Number of RNA genes: 62 /// ENTRY T00278 Complete Genome NAME sak, S.agalactiae_A909, STRA1, 205921 DEFINITION Streptococcus agalactiae A909 (serotype Ia) ANNOTATION manual TAXONOMY TAX:205921 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Septicemia, pneumonia, and meningitis CHROMOSOME Circular SEQUENCE RS:NC_007432 LENGTH 2127839 STATISTICS Number of nucleotides: 2127839 Number of protein genes: 1996 Number of RNA genes: 102 REFERENCE PMID:16172379 AUTHORS Tettelin H, et al. TITLE Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome". JOURNAL Proc Natl Acad Sci U S A 102:13950-5 (2005) /// ENTRY T00279 Complete Genome NAME nph, N.pharaonis, NATPD, 348780 DEFINITION Natronomonas pharaonis DSM 2160 ANNOTATION manual TAXONOMY TAX:348780 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck COMMENT Haloalkaliphilic archaeon isolated from salt-saturated lakes of pH 11 CHROMOSOME Circular SEQUENCE RS:NC_007426 LENGTH 2595221 PLASMID PL131; Circular SEQUENCE RS:NC_007427 LENGTH 130989 PLASMID PL23; Circular SEQUENCE RS:NC_007428 LENGTH 23486 STATISTICS Number of nucleotides: 2749696 Number of protein genes: 2820 Number of RNA genes: 51 REFERENCE PMID:16169924 AUTHORS Falb M, et al. TITLE Living with two extremes: Conclusions from the genome sequence of Natronomonas pharaonis. JOURNAL Genome Res 15:1336-43 (2005) /// ENTRY T00280 Complete Genome NAME cta, C.trachomatis_A, CHLTA, 315277 DEFINITION Chlamydia trachomatis A/HAR-13 (serovar A) ANNOTATION manual TAXONOMY TAX:315277 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia DATA_SOURCE RefSeq ORIGINAL_DB NIAID DISEASE Urethritis, cervicitis, inclusion conjunctivitis, trachoma CHROMOSOME Circular SEQUENCE RS:NC_007429 LENGTH 1044459 PLASMID pCTA; Circular SEQUENCE RS:NC_007430 LENGTH 7510 STATISTICS Number of nucleotides: 1051969 Number of protein genes: 919 Number of RNA genes: 44 REFERENCE PMID:16177312 AUTHORS Carlson JH, et al. TITLE Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains. JOURNAL Infect Immun 73:6407-18 (2005) /// ENTRY T00281 Complete Genome NAME noc, N.oceani, NITOC, 323261 DEFINITION Nitrosococcus oceani ATCC 19707 ANNOTATION manual TAXONOMY TAX:323261 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007484 LENGTH 3481691 PLASMID A; Circular SEQUENCE RS:NC_007483 LENGTH 40420 STATISTICS Number of nucleotides: 3522111 Number of protein genes: 3017 Number of RNA genes: 54 REFERENCE PMID:16957257 AUTHORS Klotz MG, et al. TITLE Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707. JOURNAL Appl Environ Microbiol 72:6299-315 (2006) /// ENTRY T00282 Complete Genome NAME pha, P.haloplanktis, PSEHT, 326442 DEFINITION Pseudoalteromonas haloplanktis TAC125 ANNOTATION manual TAXONOMY TAX:326442 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas DATA_SOURCE RefSeq ORIGINAL_DB Genoscope Pasteur CHROMOSOME I; Circular SEQUENCE RS:NC_007481 LENGTH 3214944 CHROMOSOME II; Circular SEQUENCE RS:NC_007482 LENGTH 635328 STATISTICS Number of nucleotides: 3850272 Number of protein genes: 3485 Number of RNA genes: 134 REFERENCE PMID:16169927 AUTHORS Medigue C, et al. TITLE Coping with cold: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. JOURNAL Genome Res 15:1325-35 (2005) /// ENTRY T00283 Complete Genome NAME pfo, P.fluorescens_PfO1, PSEPF, 205922 DEFINITION Pseudomonas fluorescens Pf0-1 ANNOTATION manual TAXONOMY TAX:205922 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI COMMENT Soil bacterium potentially important for biocontrol and bioremediation CHROMOSOME Circular SEQUENCE RS:NC_007492 LENGTH 6438405 STATISTICS Number of nucleotides: 6438405 Number of protein genes: 5722 Number of RNA genes: 95 REFERENCE PMID:19432983 AUTHORS Silby MW, et al. TITLE Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. JOURNAL Genome Biol 10:R51 (2009) /// ENTRY T00284 Complete Genome NAME rsp, R.sphaeroides, RHOS4, 272943 DEFINITION Rhodobacter sphaeroides 2.4.1 ANNOTATION manual TAXONOMY TAX:272943 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI Texas COMMENT Photosynthetic alpha-proteobacterium CHROMOSOME 1; Circular SEQUENCE RS:NC_007493 LENGTH 3188609 CHROMOSOME 2; Circular SEQUENCE RS:NC_007494 LENGTH 943016 PLASMID A SEQUENCE RS:NC_009007 LENGTH 114045 PLASMID B; Circular SEQUENCE RS:NC_007488 LENGTH 114178 PLASMID C; Circular SEQUENCE RS:NC_007489 LENGTH 105284 PLASMID D; Circular SEQUENCE RS:NC_007490 LENGTH 100828 PLASMID E SEQUENCE RS:NC_009008 LENGTH 37100 STATISTICS Number of nucleotides: 4603060 Number of protein genes: 4242 Number of RNA genes: 66 /// ENTRY T00285 Complete Genome NAME pca, P.carbinolicus, PELCD, 338963 DEFINITION Pelobacter carbinolicus DSM 2380 ANNOTATION manual TAXONOMY TAX:338963 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007498 LENGTH 3665893 STATISTICS Number of nucleotides: 3665893 Number of protein genes: 3352 Number of RNA genes: 63 /// ENTRY T00286 Complete Genome NAME bur, Burkholderia_383, BURS3, 269483 DEFINITION Burkholderia sp. 383 ANNOTATION manual TAXONOMY TAX:269483 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB JGI JCVI-Pathema CHROMOSOME 1; Circular SEQUENCE RS:NC_007510 LENGTH 3694126 CHROMOSOME 2; Circular SEQUENCE RS:NC_007511 LENGTH 3587082 CHROMOSOME 3; Circular SEQUENCE RS:NC_007509 LENGTH 1395069 STATISTICS Number of nucleotides: 8676277 Number of protein genes: 7717 Number of RNA genes: 88 /// ENTRY T00287 Complete Genome NAME chy, C.hydrogenoformans, CARHZ, 246194 DEFINITION Carboxydothermus hydrogenoformans Z-2901 ANNOTATION manual TAXONOMY TAX:246194 LINEAGE Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_007503 LENGTH 2401520 STATISTICS Number of nucleotides: 2401520 Number of protein genes: 2620 Number of RNA genes: 63 REFERENCE PMID:16311624 AUTHORS Wu M, et al. TITLE Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. JOURNAL PLoS Genet 1:e65 (2005) /// ENTRY T00288 Complete Genome NAME xcv, X.campestris_vesicatoria, XANC5, 316273 DEFINITION Xanthomonas campestris pv. vesicatoria 85-10 ANNOTATION manual TAXONOMY TAX:316273 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas DATA_SOURCE RefSeq ORIGINAL_DB Halle Germany DISEASE Bacterial spot disease in pepper and tomato plants CHROMOSOME Circular SEQUENCE RS:NC_007508 LENGTH 5178466 PLASMID pXCV183; Circular SEQUENCE RS:NC_007507 LENGTH 182572 PLASMID pXCV38; Circular SEQUENCE RS:NC_007506 LENGTH 38116 PLASMID pXCV19; Circular SEQUENCE RS:NC_007505 LENGTH 19146 PLASMID pXCV2; Circular SEQUENCE RS:NC_007504 LENGTH 1852 STATISTICS Number of nucleotides: 5420152 Number of protein genes: 4726 Number of RNA genes: 60 REFERENCE PMID:16237009 AUTHORS Thieme F, et al. TITLE Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL J Bacteriol 187:7254-66 (2005) /// ENTRY T00289 Complete Genome NAME bpm, B.pseudomallei_1710b, BURP1, 320372 DEFINITION Burkholderia pseudomallei 1710b ANNOTATION manual TAXONOMY TAX:320372 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR JCVI-Pathema DISEASE Melioidosis CHROMOSOME I; Circular SEQUENCE RS:NC_007434 LENGTH 4126292 CHROMOSOME II; Circular SEQUENCE RS:NC_007435 LENGTH 3181762 STATISTICS Number of nucleotides: 7308054 Number of protein genes: 6347 Number of RNA genes: 73 /// ENTRY T00290 Complete Genome NAME cch, C.chlorochromatii, CHLCH, 340177 DEFINITION Chlorobium chlorochromatii CaD3 ANNOTATION manual TAXONOMY TAX:340177 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007514 LENGTH 2572079 STATISTICS Number of nucleotides: 2572079 Number of protein genes: 2002 Number of RNA genes: 48 /// ENTRY T00291 Complete Genome NAME plt, P.luteolum, PELLD, 319225 DEFINITION Pelodictyon luteolum DSM 273 ANNOTATION manual TAXONOMY TAX:319225 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007512 LENGTH 2364842 STATISTICS Number of nucleotides: 2364842 Number of protein genes: 2083 Number of RNA genes: 54 /// ENTRY T00292 Complete Genome NAME syd, Synechococcus_CC9605, SYNSC, 110662 DEFINITION Synechococcus sp. CC9605 ANNOTATION manual TAXONOMY TAX:110662 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_007516 LENGTH 2510659 STATISTICS Number of nucleotides: 2510659 Number of protein genes: 2645 Number of RNA genes: 54 /// ENTRY T00293 Complete Genome NAME sye, Synechococcus_CC9902, SYNS9, 316279 DEFINITION Synechococcus sp. CC9902 ANNOTATION manual TAXONOMY TAX:316279 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_007513 LENGTH 2234828 STATISTICS Number of nucleotides: 2234828 Number of protein genes: 2306 Number of RNA genes: 51 /// ENTRY T00294 Complete Genome NAME dde, D.desulfuricans, DESDG, 207559 DEFINITION Desulfovibrio desulfuricans G20 ANNOTATION manual TAXONOMY TAX:207559 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007519 LENGTH 3730232 STATISTICS Number of nucleotides: 3730232 Number of protein genes: 3775 Number of RNA genes: 81 /// ENTRY T00295 Complete Genome NAME gme, G.metallireducens, GEOMG, 269799 DEFINITION Geobacter metallireducens GS-15 ANNOTATION manual TAXONOMY TAX:269799 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI U. Massachusetts CHROMOSOME Circular SEQUENCE RS:NC_007517 LENGTH 3997420 PLASMID unnamed; Circular SEQUENCE RS:NC_007515 LENGTH 13762 STATISTICS Number of nucleotides: 4011182 Number of protein genes: 3532 Number of RNA genes: 59 /// ENTRY T00296 Complete Genome NAME tcx, T.crunogena, THICR, 317025 DEFINITION Thiomicrospira crunogena XCL-2 ANNOTATION manual TAXONOMY TAX:317025 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007520 LENGTH 2427734 STATISTICS Number of nucleotides: 2427734 Number of protein genes: 2196 Number of RNA genes: 55 REFERENCE PMID:17105352 AUTHORS Scott KM, et al. TITLE The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. JOURNAL PLoS Biol 4:e383 (2006) /// ENTRY T00297 Complete Genome NAME pmi, P.marinus_MIT9312, PROM9, 74546 DEFINITION Prochlorococcus marinus MIT 9312 ANNOTATION manual TAXONOMY TAX:74546 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_007577 LENGTH 1709204 STATISTICS Number of nucleotides: 1709204 Number of protein genes: 1810 Number of RNA genes: 45 /// ENTRY T00298 Complete Genome NAME tdn, T.denitrificans_ATCC33889, SULDN, 326298 DEFINITION Sulfurimonas denitrificans DSM 1251 ANNOTATION manual TAXONOMY TAX:326298 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfurimonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007575 LENGTH 2201561 STATISTICS Number of nucleotides: 2201561 Number of protein genes: 2096 Number of RNA genes: 60 REFERENCE PMID:18065616 AUTHORS Sievert SM, et al. TITLE Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. JOURNAL Appl Environ Microbiol 74:1145-56 (2008) /// ENTRY T00299 Complete Genome NAME lsa, L.sakei, LACSS, 314315 DEFINITION Lactobacillus sakei 23K ANNOTATION manual TAXONOMY TAX:314315 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB INRA CHROMOSOME Circular SEQUENCE RS:NC_007576 LENGTH 1884661 STATISTICS Number of nucleotides: 1884661 Number of protein genes: 1879 Number of RNA genes: 84 REFERENCE PMID:16273110 AUTHORS Chaillou S, et al. TITLE The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K. JOURNAL Nat Biotechnol 23:1527-33 (2005) /// ENTRY T00300 Complete Genome NAME syf, Synechococcus_PCC7942, SYNE7, 1140 DEFINITION Synechococcus elongatus PCC 7942 ANNOTATION manual TAXONOMY TAX:1140 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_007604 LENGTH 2695903 PLASMID 1; Circular SEQUENCE RS:NC_007595 LENGTH 46366 STATISTICS Number of nucleotides: 2742269 Number of protein genes: 2662 Number of RNA genes: 53 /// ENTRY T00301 Complete Genome NAME sbo, S.boydii, SHIBS, 300268 DEFINITION Shigella boydii Sb227 ANNOTATION manual TAXONOMY TAX:300268 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella DATA_SOURCE RefSeq ORIGINAL_DB ShiBASE China DISEASE Dysentery CHROMOSOME Circular SEQUENCE RS:NC_007613 LENGTH 4519823 PLASMID pSB4_227; Circular SEQUENCE RS:NC_007608 LENGTH 126697 STATISTICS Number of nucleotides: 4646520 Number of protein genes: 4281 Number of RNA genes: 113 REFERENCE PMID:16275786 AUTHORS Yang F, et al. TITLE Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. JOURNAL Nucleic Acids Res 33:6445-58 (2005) /// ENTRY T00302 Complete Genome NAME nmu, N.multiformis, NITMU, 323848 DEFINITION Nitrosospira multiformis ATCC 25196 ANNOTATION manual TAXONOMY TAX:323848 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_007614 LENGTH 3184243 PLASMID p1; Circular SEQUENCE RS:NC_007615 LENGTH 18871 PLASMID p2; Circular SEQUENCE RS:NC_007616 LENGTH 17036 PLASMID p3; Circular SEQUENCE RS:NC_007617 LENGTH 14159 STATISTICS Number of nucleotides: 3234309 Number of protein genes: 2805 Number of RNA genes: 49 REFERENCE PMID:18390676 AUTHORS Norton JM, et al. TITLE Complete genome sequence of Nitrosospira multiformis, an ammonia- oxidizing bacterium from the soil environment. JOURNAL Appl Environ Microbiol 74:3559-72 (2008) /// ENTRY T00303 Complete Genome NAME sab, S.aureus_RF122, STAAB, 273036 DEFINITION Staphylococcus aureus RF122/ET3-1, bovine mastitis-causing ANNOTATION manual TAXONOMY TAX:273036 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB Minnesota DISEASE Bovine mastitis CHROMOSOME Circular SEQUENCE RS:NC_007622 LENGTH 2742531 STATISTICS Number of nucleotides: 2742531 Number of protein genes: 2509 Number of RNA genes: 76 REFERENCE PMID:17971880 AUTHORS Herron-Olson L, et al. TITLE Molecular correlates of host specialization in Staphylococcus aureus. JOURNAL PLoS ONE 2:e1120 (2007) /// ENTRY T00304 Complete Genome NAME bmf, B.melitensis_Abortus, BRUA2, 359391 DEFINITION Brucella melitensis biovar Abortus 2308 ANNOTATION manual TAXONOMY TAX:359391 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB LLNL DISEASE Brucellosis CHROMOSOME I; Circular SEQUENCE RS:NC_007618 LENGTH 2121359 CHROMOSOME II; Circular SEQUENCE RS:NC_007624 LENGTH 1156948 STATISTICS Number of nucleotides: 3278307 Number of protein genes: 3034 Number of RNA genes: 67 REFERENCE PMID:16299333 AUTHORS Chain PS, et al. TITLE Whole-genome analyses of speciation events in pathogenic brucellae. JOURNAL Infect Immun 73:8353-61 (2005) /// ENTRY T00305 Complete Genome NAME mag, M.magneticum, MAGMM, 342108 DEFINITION Magnetospirillum magneticum AMB-1 ANNOTATION manual TAXONOMY TAX:342108 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum DATA_SOURCE RefSeq ORIGINAL_DB TUAT Japan CHROMOSOME Circular SEQUENCE RS:NC_007626 LENGTH 4967148 STATISTICS Number of nucleotides: 4967148 Number of protein genes: 4559 Number of RNA genes: 52 REFERENCE PMID:16303747 AUTHORS Matsunaga T, et al. TITLE Complete Genome Sequence of the Facultative Anaerobic Magnetotactic Bacterium Magnetospirillum sp. strain AMB-1. JOURNAL DNA Res 12:157-66 (2005) /// ENTRY T00306 Complete Genome NAME sdy, S.dysenteriae, SHIDS, 300267 DEFINITION Shigella dysenteriae Sd197 ANNOTATION manual TAXONOMY TAX:300267 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella DATA_SOURCE RefSeq ORIGINAL_DB ShiBASE China DISEASE Dysentery CHROMOSOME Circular SEQUENCE RS:NC_007606 LENGTH 4369232 PLASMID pSD1_197; Circular SEQUENCE RS:NC_007607 LENGTH 182726 PLASMID pSD197_spA; Circular SEQUENCE RS:NC_009344 LENGTH 8953 STATISTICS Number of nucleotides: 4560911 Number of protein genes: 4501 Number of RNA genes: 107 REFERENCE PMID:16275786 AUTHORS Yang F, et al. TITLE Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. JOURNAL Nucleic Acids Res 33:6445-58 (2005) /// ENTRY T00307 Complete Genome NAME hch, H.chejuensis, HAHCH, 349521 DEFINITION Hahella chejuensis KCTC 2396 ANNOTATION manual TAXONOMY TAX:349521 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella DATA_SOURCE RefSeq ORIGINAL_DB KRIBB CHROMOSOME Circular SEQUENCE RS:NC_007645 LENGTH 7215267 STATISTICS Number of nucleotides: 7215267 Number of protein genes: 6778 Number of RNA genes: 82 REFERENCE PMID:16352867 AUTHORS Jeong H, et al. TITLE Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent. JOURNAL Nucleic Acids Res 33:7066-73 (2005) /// ENTRY T00308 Complete Genome NAME mta, M.thermoacetica, MOOTA, 264732 DEFINITION Moorella thermoacetica ATCC 39073 ANNOTATION manual TAXONOMY TAX:264732 LINEAGE Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007644 LENGTH 2628784 STATISTICS Number of nucleotides: 2628784 Number of protein genes: 2463 Number of RNA genes: 92 REFERENCE PMID:18631365 AUTHORS Pierce E, et al. TITLE The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum). JOURNAL Environ Microbiol 10:2550-73 (2008) /// ENTRY T00309 Complete Genome NAME mcp, M.capricolum, MYCCT, 340047 DEFINITION Mycoplasma capricolum subsp. capricolum ATCC 27343 ANNOTATION manual TAXONOMY TAX:340047 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Caprine contagious agalactia, pleuropneumonia CHROMOSOME Circular SEQUENCE RS:NC_007633 LENGTH 1010023 STATISTICS Number of nucleotides: 1010023 Number of protein genes: 812 Number of RNA genes: 42 /// ENTRY T00310 Complete Genome NAME rru, R.rubrum, RHORT, 269796 DEFINITION Rhodospirillum rubrum ATCC 11170 ANNOTATION manual TAXONOMY TAX:269796 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007643 LENGTH 4352825 PLASMID unnamed; Circular SEQUENCE RS:NC_007641 LENGTH 53732 STATISTICS Number of nucleotides: 4406557 Number of protein genes: 3841 Number of RNA genes: 70 /// ENTRY T00311 Complete Genome NAME bte, B.thailandensis, BURTA, 271848 DEFINITION Burkholderia thailandensis E264 ANNOTATION manual TAXONOMY TAX:271848 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR JCVI-Pathema COMMENT Non-pathogenic saprophyte of Burkholderia CHROMOSOME I; Circular SEQUENCE RS:NC_007651 LENGTH 3809201 CHROMOSOME II; Circular SEQUENCE RS:NC_007650 LENGTH 2914771 STATISTICS Number of nucleotides: 6723972 Number of protein genes: 5634 Number of RNA genes: 72 REFERENCE PMID:16336651 AUTHORS Kim HS, et al. TITLE Bacterial genome adaptation to niches: Divergence of the potential virulence genes in three Burkholderia species of different survival strategies. JOURNAL BMC Genomics 6:174 (2005) /// ENTRY T00312 Complete Genome NAME sru, S.ruber, SALRD, 309807 DEFINITION Salinibacter ruber DSM 13855 ANNOTATION manual TAXONOMY TAX:309807 LINEAGE Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Rhodothermaceae; Salinibacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_007677 LENGTH 3551823 PLASMID pSR35; Circular SEQUENCE RS:NC_007678 LENGTH 35505 STATISTICS Number of nucleotides: 3587328 Number of protein genes: 2833 Number of RNA genes: 48 REFERENCE PMID:16330755 AUTHORS Mongodin EF, et al. TITLE The genome of Salinibacter ruber: Convergence and gene exchange among hyperhalophilic bacteria and archaea. JOURNAL Proc Natl Acad Sci U S A 102:18147-52 (2005) /// ENTRY T00313 Complete Genome NAME mst, M.stadtmanae, METST, 339860 DEFINITION Methanosphaera stadtmanae DSM 3091 ANNOTATION manual TAXONOMY TAX:339860 LINEAGE Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanosphaera DATA_SOURCE RefSeq ORIGINAL_DB Goettingen CHROMOSOME Circular SEQUENCE RS:NC_007681 LENGTH 1767403 STATISTICS Number of nucleotides: 1767403 Number of protein genes: 1534 Number of RNA genes: 52 REFERENCE PMID:16385054 AUTHORS Fricke WF, et al. TITLE The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis. JOURNAL J Bacteriol 188:642-58 (2006) /// ENTRY T00314 Complete Genome NAME ayw, Phytoplasma_AYWB, AYWBP, 322098 DEFINITION Aster yellows witches'-broom phytoplasma AYWB ANNOTATION manual TAXONOMY TAX:322098 LINEAGE Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma; Candidatus Phytoplasma asteris DATA_SOURCE RefSeq ORIGINAL_DB Ohio State U. CHROMOSOME Circular SEQUENCE RS:NC_007716 LENGTH 706569 PLASMID pAYWB-I; Circular SEQUENCE RS:NC_007717 LENGTH 3972 PLASMID pAYWB-II; Circular SEQUENCE RS:NC_007718 LENGTH 4009 PLASMID pAYWB-III; Circular SEQUENCE RS:NC_007719 LENGTH 5104 PLASMID pAYWB-IV; Circular SEQUENCE RS:NC_007720 LENGTH 4316 STATISTICS Number of nucleotides: 723970 Number of protein genes: 693 Number of RNA genes: 37 REFERENCE PMID:16672622 AUTHORS Bai X, et al. TITLE Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. JOURNAL J Bacteriol 188:3682-96 (2006) /// ENTRY T00315 Complete Genome NAME eli, E.litoralis, ERYLH, 314225 DEFINITION Erythrobacter litoralis HTCC2594 ANNOTATION manual TAXONOMY TAX:314225 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_007722 LENGTH 3052398 STATISTICS Number of nucleotides: 3052398 Number of protein genes: 3011 Number of RNA genes: 45 REFERENCE PMID:19168610 AUTHORS Oh HM, et al. TITLE Complete genome sequence of Erythrobacter litoralis HTCC2594. JOURNAL J Bacteriol 191:2419-20 (2009) /// ENTRY T00316 Complete Genome NAME sgl, S.glossinidius, SODGM, 343509 DEFINITION Sodalis glossinidius morsitans, endosymbiont of Glossina spp. (tsetse flies) ANNOTATION manual TAXONOMY TAX:343509 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis DATA_SOURCE RefSeq ORIGINAL_DB Kitasato CHROMOSOME Circular SEQUENCE RS:NC_007712 LENGTH 4171146 PLASMID pSG1; Circular SEQUENCE RS:NC_007713 LENGTH 83306 PLASMID pSG2; Circular SEQUENCE RS:NC_007714 LENGTH 27240 PLASMID pSG3; Circular SEQUENCE RS:NC_007715 LENGTH 10810 STATISTICS Number of nucleotides: 4292502 Number of protein genes: 2516 Number of RNA genes: 91 REFERENCE PMID:16365377 AUTHORS Toh H, et al. TITLE Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host. JOURNAL Genome Res 16:149-56 (2006) /// ENTRY T00317 Complete Genome NAME ret, R.etli, RHIEC, 347834 DEFINITION Rhizobium etli CFN 42 ANNOTATION manual TAXONOMY TAX:347834 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium DATA_SOURCE RefSeq ORIGINAL_DB UNAM RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_007761 LENGTH 4381608 PLASMID p42a; Circular SEQUENCE RS:NC_007762 LENGTH 194229 PLASMID p42b; Circular SEQUENCE RS:NC_007763 LENGTH 184338 PLASMID p42c; Circular SEQUENCE RS:NC_007764 LENGTH 250948 PLASMID p42d; Circular SEQUENCE RS:NC_004041 LENGTH 371254 PLASMID p42e; Circular SEQUENCE RS:NC_007765 LENGTH 505334 PLASMID p42f; Circular SEQUENCE RS:NC_007766 LENGTH 642517 STATISTICS Number of nucleotides: 6530228 Number of protein genes: 5963 Number of RNA genes: 59 REFERENCE PMID:16505379 AUTHORS Gonzalez V, et al. TITLE The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons. JOURNAL Proc Natl Acad Sci U S A 103:3834-9 (2006) /// ENTRY T00318 Complete Genome NAME cya, Cyanobacteria_CYA, SYNJA, 321327 DEFINITION Cyanobacteria bacterium Yellowstone A-Prime (Synechococcus sp. JA- 3-3Ab) ANNOTATION manual TAXONOMY TAX:321327 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_007775 LENGTH 2932766 STATISTICS Number of nucleotides: 2932766 Number of protein genes: 2760 Number of RNA genes: 55 REFERENCE PMID:16391090 AUTHORS Allewalt JP, et al. TITLE Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park. JOURNAL Appl Environ Microbiol 72:544-50 (2006) /// ENTRY T00319 Complete Genome NAME cyb, Cyanobacteria_CYB, SYNJB, 321332 DEFINITION Cyanobacteria bacterium Yellowstone B-Prime (Synechococcus sp. JA- 2-3B'a(2-13)) ANNOTATION manual TAXONOMY TAX:321332 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_007776 LENGTH 3046682 STATISTICS Number of nucleotides: 3046682 Number of protein genes: 2862 Number of RNA genes: 52 REFERENCE PMID:16391090 AUTHORS Allewalt JP, et al. TITLE Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park. JOURNAL Appl Environ Microbiol 72:544-50 (2006) /// ENTRY T00320 Complete Genome NAME fra, Frankia_CcI3, FRASC, 106370 DEFINITION Frankia sp. CcI3 ANNOTATION manual TAXONOMY TAX:106370 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Frankiaceae; Frankia DATA_SOURCE RefSeq ORIGINAL_DB JGI RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_007777 LENGTH 5433628 STATISTICS Number of nucleotides: 5433628 Number of protein genes: 4499 Number of RNA genes: 70 REFERENCE PMID:17151343 AUTHORS Normand P, et al. TITLE Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. JOURNAL Genome Res 17:7-15 (2007) /// ENTRY T00321 Complete Genome NAME rpb, R.palustris_HaA2, RHOP2, 316058 DEFINITION Rhodopseudomonas palustris HaA2 ANNOTATION manual TAXONOMY TAX:316058 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007778 LENGTH 5331656 STATISTICS Number of nucleotides: 5331656 Number of protein genes: 4683 Number of RNA genes: 59 REFERENCE PMID:19020098 AUTHORS Oda Y, et al. TITLE Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. JOURNAL Proc Natl Acad Sci U S A 105:18543-8 (2008) /// ENTRY T00322 Complete Genome NAME nar, N.aromaticivorans, NOVAD, 279238 DEFINITION Novosphingobium aromaticivorans DSM 12444 ANNOTATION manual TAXONOMY TAX:279238 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007794 LENGTH 3561584 PLASMID pNL1; Circular SEQUENCE RS:NC_009426 LENGTH 184462 PLASMID pNL2; Circular SEQUENCE RS:NC_009427 LENGTH 487268 STATISTICS Number of nucleotides: 4233314 Number of protein genes: 3937 Number of RNA genes: 74 /// ENTRY T00323 Complete Genome NAME saa, S.aureus_USA300, STAA3, 451515 DEFINITION Staphylococcus aureus subsp. aureus USA300_FPR3757, community- acquired meticillin-resistant ANNOTATION manual TAXONOMY TAX:451515 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB UCSF DISEASE Toxic-shock syndrome and staphylococcal scarlet fever CHROMOSOME Circular SEQUENCE RS:NC_007793 LENGTH 2872769 PLASMID pUSA01; Circular SEQUENCE RS:NC_007790 LENGTH 3125 PLASMID pUSA02; Circular SEQUENCE RS:NC_007791 LENGTH 4439 PLASMID pUSA03; Circular SEQUENCE RS:NC_007792 LENGTH 37136 STATISTICS Number of nucleotides: 2917469 Number of protein genes: 2604 Number of RNA genes: 70 REFERENCE PMID:16517273 AUTHORS Diep BA, et al. TITLE Complete genome sequence of USA300, an epidemic clone of community- acquired meticillin-resistant Staphylococcus aureus. JOURNAL Lancet 367:731-9 (2006) /// ENTRY T00324 Complete Genome NAME sao, S.aureus_NCTC8325, STAA8, 93061 DEFINITION Staphylococcus aureus subsp. aureus NCTC 8325 ANNOTATION manual TAXONOMY TAX:93061 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB Oklahoma microgen CHROMOSOME Circular SEQUENCE RS:NC_007795 LENGTH 2821361 STATISTICS Number of nucleotides: 2821361 Number of protein genes: 2892 Number of RNA genes: 77 /// ENTRY T00325 Complete Genome NAME mhu, M.hungatei, METHJ, 323259 DEFINITION Methanospirillum hungatei JF-1 ANNOTATION manual TAXONOMY TAX:323259 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanospirillaceae; Methanospirillum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007796 LENGTH 3544738 STATISTICS Number of nucleotides: 3544738 Number of protein genes: 3139 Number of RNA genes: 66 /// ENTRY T00326 Complete Genome NAME ade, A.dehalogenans, ANADE, 290397 DEFINITION Anaeromyxobacter dehalogenans 2CP-C ANNOTATION manual TAXONOMY TAX:290397 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Anaeromyxobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007760 LENGTH 5013479 STATISTICS Number of nucleotides: 5013479 Number of protein genes: 4346 Number of RNA genes: 58 /// ENTRY T00327 Complete Genome NAME aph, A.phagocytophilum, ANAPZ, 212042 DEFINITION Anaplasma phagocytophilum HZ ANNOTATION manual TAXONOMY TAX:212042 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; phagocytophilum group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE granulocytic anaplasmosis CHROMOSOME Circular SEQUENCE RS:NC_007797 LENGTH 1471282 STATISTICS Number of nucleotides: 1471282 Number of protein genes: 1264 Number of RNA genes: 42 REFERENCE PMID:16482227 AUTHORS Dunning Hotopp JC, et al. TITLE Comparative genomics of emerging human ehrlichiosis agents. JOURNAL PLoS Genet 2:e21 (2006) /// ENTRY T00328 Complete Genome NAME ech, E.chaffeensis, EHRCR, 205920 DEFINITION Ehrlichia chaffeensis Arkansas ANNOTATION manual TAXONOMY TAX:205920 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE monocytic ehrlichiosis CHROMOSOME Circular SEQUENCE RS:NC_007799 LENGTH 1176248 STATISTICS Number of nucleotides: 1176248 Number of protein genes: 1105 Number of RNA genes: 43 REFERENCE PMID:16482227 AUTHORS Dunning Hotopp JC, et al. TITLE Comparative genomics of emerging human ehrlichiosis agents. JOURNAL PLoS Genet 2:e21 (2006) /// ENTRY T00329 Complete Genome NAME nse, N.sennetsu, NEOSM, 222891 DEFINITION Neorickettsia sennetsu Miyayama ANNOTATION manual TAXONOMY TAX:222891 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Neorickettsia DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE sennetsu ehrlichiosis CHROMOSOME Circular SEQUENCE RS:NC_007798 LENGTH 859006 STATISTICS Number of nucleotides: 859006 Number of protein genes: 932 Number of RNA genes: 38 REFERENCE PMID:16482227 AUTHORS Dunning Hotopp JC, et al. TITLE Comparative genomics of emerging human ehrlichiosis agents. JOURNAL PLoS Genet 2:e21 (2006) /// ENTRY T00330 Complete Genome NAME jan, Jannaschia_CCS1, JANSC, 290400 DEFINITION Jannaschia sp. CCS1 ANNOTATION manual TAXONOMY TAX:290400 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia DATA_SOURCE RefSeq ORIGINAL_DB JGI RoseoBase CHROMOSOME Circular SEQUENCE RS:NC_007802 LENGTH 4317977 PLASMID plasmid1; Circular SEQUENCE RS:NC_007801 LENGTH 86072 STATISTICS Number of nucleotides: 4404049 Number of protein genes: 4283 Number of RNA genes: 53 REFERENCE PMID:17526795 AUTHORS Moran MA, et al. TITLE Ecological genomics of marine Roseobacters. JOURNAL Appl Environ Microbiol 73:4559-69 (2007) /// ENTRY T00331 Complete Genome NAME ftl, F.tularensis_LVS, FRATU, 119857 DEFINITION Francisella tularensis subsp. holarctica LVS (Live Vaccine Strain) ANNOTATION manual TAXONOMY TAX:119857 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella DATA_SOURCE RefSeq ORIGINAL_DB Livermore DISEASE Tularemia CHROMOSOME Circular SEQUENCE RS:NC_007880 LENGTH 1895994 STATISTICS Number of nucleotides: 1895994 Number of protein genes: 1754 Number of RNA genes: 53 /// ENTRY T00332 Complete Genome NAME cfe, C.felis, CHLFF, 264202 DEFINITION Chlamydophila felis Fe/C-56 ANNOTATION manual TAXONOMY TAX:264202 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila DATA_SOURCE RefSeq ORIGINAL_DB Kitasato DISEASE Chlamydiosis in cats CHROMOSOME Circular SEQUENCE RS:NC_007899 LENGTH 1166239 PLASMID pCfe1; Circular SEQUENCE RS:NC_007900 LENGTH 7552 STATISTICS Number of nucleotides: 1173791 Number of protein genes: 1013 Number of RNA genes: 41 REFERENCE PMID:16766509 AUTHORS Azuma Y, et al. TITLE Genome sequence of the cat pathogen, Chlamydophila felis. JOURNAL DNA Res 13:15-23 (2006) /// ENTRY T00333 Complete Genome NAME dsy, D.hafniense, DESHY, 138119 DEFINITION Desulfitobacterium hafniense Y51 ANNOTATION manual TAXONOMY TAX:138119 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium DATA_SOURCE RefSeq ORIGINAL_DB RITE Japan CHROMOSOME Circular SEQUENCE RS:NC_007907 LENGTH 5727534 STATISTICS Number of nucleotides: 5727534 Number of protein genes: 5060 Number of RNA genes: 77 REFERENCE PMID:16513756 AUTHORS Nonaka H, et al. TITLE Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195. JOURNAL J Bacteriol 188:2262-74 (2006) /// ENTRY T00334 Complete Genome NAME rfr, R.ferrireducens, RHOFD, 338969 DEFINITION Rhodoferax ferrireducens T118 (DSM 15236) ANNOTATION manual TAXONOMY TAX:338969 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007908 LENGTH 4712337 PLASMID plasmid1; Circular SEQUENCE RS:NC_007901 LENGTH 257447 STATISTICS Number of nucleotides: 4969784 Number of protein genes: 4418 Number of RNA genes: 60 /// ENTRY T00335 Complete Genome NAME sde, S.degradans, SACD2, 203122 DEFINITION Saccharophagus degradans 2-40 ANNOTATION manual TAXONOMY TAX:203122 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007912 LENGTH 5057531 STATISTICS Number of nucleotides: 5057531 Number of protein genes: 4007 Number of RNA genes: 50 REFERENCE PMID:18516288 AUTHORS Weiner RM, et al. TITLE Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T. JOURNAL PLoS Genet 4:e1000087 (2008) /// ENTRY T00336 Complete Genome NAME rpc, R.palustris_BisB18, RHOPB, 316056 DEFINITION Rhodopseudomonas palustris BisB18 ANNOTATION manual TAXONOMY TAX:316056 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007925 LENGTH 5513844 STATISTICS Number of nucleotides: 5513844 Number of protein genes: 4886 Number of RNA genes: 73 REFERENCE PMID:19020098 AUTHORS Oda Y, et al. TITLE Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. JOURNAL Proc Natl Acad Sci U S A 105:18543-8 (2008) /// ENTRY T00337 Complete Genome NAME lsl, L.salivarius, LACS1, 362948 DEFINITION Lactobacillus salivarius subsp. salivarius UCC118 ANNOTATION manual TAXONOMY TAX:362948 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB Cork Ireland CHROMOSOME Circular SEQUENCE RS:NC_007929 LENGTH 1827111 PLASMID pMP118; Circular SEQUENCE RS:NC_007930 LENGTH 242436 PLASMID pSF118-44; Circular SEQUENCE RS:NC_006530 LENGTH 44013 PLASMID pSF118-20; Circular SEQUENCE RS:NC_006529 LENGTH 20417 STATISTICS Number of nucleotides: 2133977 Number of protein genes: 2013 Number of RNA genes: 99 REFERENCE PMID:16617113 AUTHORS Claesson MJ, et al. TITLE Multireplicon genome architecture of Lactobacillus salivarius. JOURNAL Proc Natl Acad Sci U S A 103:6718-23 (2006) /// ENTRY T00338 Complete Genome NAME eci, E.coli_UTI89, ECOUT, 364106 DEFINITION Escherichia coli UTI89 (UPEC) ANNOTATION manual TAXONOMY TAX:364106 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Washington U DISEASE Urinary tract infection CHROMOSOME Circular SEQUENCE RS:NC_007946 LENGTH 5065741 PLASMID pUTI89; Circular SEQUENCE RS:NC_007941 LENGTH 114230 STATISTICS Number of nucleotides: 5179971 Number of protein genes: 5166 Number of RNA genes: 110 REFERENCE PMID:16585510 AUTHORS Chen SL, et al. TITLE Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach. JOURNAL Proc Natl Acad Sci U S A 103:5977-82 (2006) /// ENTRY T00339 Complete Genome NAME rbe, R.bellii, RICBR, 336407 DEFINITION Rickettsia bellii RML369-C ANNOTATION manual TAXONOMY TAX:336407 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia DATA_SOURCE RefSeq ORIGINAL_DB CNRS Marseille CHROMOSOME Circular SEQUENCE RS:NC_007940 LENGTH 1522076 STATISTICS Number of nucleotides: 1522076 Number of protein genes: 1429 Number of RNA genes: 40 REFERENCE PMID:16703114 AUTHORS Ogata H, et al. TITLE Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. JOURNAL PLoS Genet 2:e76 (2006) /// ENTRY T00340 Complete Genome NAME bxe, B.xenovorans, BURXL, 266265 DEFINITION Burkholderia xenovorans LB400 ANNOTATION manual TAXONOMY TAX:266265 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_007951 LENGTH 4895836 CHROMOSOME 2; Circular SEQUENCE RS:NC_007952 LENGTH 3363523 CHROMOSOME 3; Circular SEQUENCE RS:NC_007953 LENGTH 1471779 STATISTICS Number of nucleotides: 9731138 Number of protein genes: 8702 Number of RNA genes: 86 REFERENCE PMID:17030797 AUTHORS Chain PS, et al. TITLE Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. JOURNAL Proc Natl Acad Sci U S A 103:15280-7 (2006) /// ENTRY T00341 Complete Genome NAME mbu, M.burtonii, METBU, 259564 DEFINITION Methanococcoides burtonii DSM 6242 ANNOTATION manual TAXONOMY TAX:259564 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007955 LENGTH 2575032 STATISTICS Number of nucleotides: 2575032 Number of protein genes: 2273 Number of RNA genes: 63 /// ENTRY T00342 Complete Genome NAME mfa, M.flagellatus, METFK, 265072 DEFINITION Methylobacillus flagellatus KT ANNOTATION manual TAXONOMY TAX:265072 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007947 LENGTH 2971517 STATISTICS Number of nucleotides: 2971517 Number of protein genes: 2753 Number of RNA genes: 63 REFERENCE PMID:17416667 AUTHORS Chistoserdova L, et al. TITLE Genome of Methylobacillus flagellatus, molecular basis for obligate methylotrophy, and polyphyletic origin of methylotrophy. JOURNAL J Bacteriol 189:4020-7 (2007) /// ENTRY T00343 Complete Genome NAME pol, Polaromonas, POLSJ, 296591 DEFINITION Polaromonas sp. JS666 ANNOTATION manual TAXONOMY TAX:296591 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007948 LENGTH 5200264 PLASMID 1; Circular SEQUENCE RS:NC_007949 LENGTH 360405 PLASMID 2; Circular SEQUENCE RS:NC_007950 LENGTH 338007 STATISTICS Number of nucleotides: 5898676 Number of protein genes: 5453 Number of RNA genes: 57 /// ENTRY T00344 Complete Genome NAME sdn, S.denitrificans, SHEDO, 318161 DEFINITION Shewanella denitrificans OS217 ANNOTATION manual TAXONOMY TAX:318161 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007954 LENGTH 4545906 STATISTICS Number of nucleotides: 4545906 Number of protein genes: 3754 Number of RNA genes: 127 /// ENTRY T00345 Complete Genome NAME rpd, R.palustris_BisB5, RHOPS, 316057 DEFINITION Rhodopseudomonas palustris BisB5 ANNOTATION manual TAXONOMY TAX:316057 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007958 LENGTH 4892717 STATISTICS Number of nucleotides: 4892717 Number of protein genes: 4397 Number of RNA genes: 74 REFERENCE PMID:19020098 AUTHORS Oda Y, et al. TITLE Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. JOURNAL Proc Natl Acad Sci U S A 105:18543-8 (2008) /// ENTRY T00346 Complete Genome NAME sat, S.aciditrophicus, SYNAS, 56780 DEFINITION Syntrophus aciditrophicus SB ANNOTATION manual TAXONOMY TAX:56780 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus DATA_SOURCE RefSeq ORIGINAL_DB Oklahoma CHROMOSOME Circular SEQUENCE RS:NC_007759 LENGTH 3179300 STATISTICS Number of nucleotides: 3179300 Number of protein genes: 3168 Number of RNA genes: 51 REFERENCE PMID:17442750 AUTHORS McInerney MJ, et al. TITLE The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth. JOURNAL Proc Natl Acad Sci U S A 104:7600-5 (2007) /// ENTRY T00347 Complete Genome NAME csa, C.salexigens, CHRSD, 290398 DEFINITION Chromohalobacter salexigens DSM 3043 ANNOTATION manual TAXONOMY TAX:290398 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Chromohalobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007963 LENGTH 3696649 STATISTICS Number of nucleotides: 3696649 Number of protein genes: 3298 Number of RNA genes: 90 /// ENTRY T00348 Complete Genome NAME nha, N.hamburgensis, NITHX, 323097 DEFINITION Nitrobacter hamburgensis X14 ANNOTATION manual TAXONOMY TAX:323097 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007964 LENGTH 4406967 PLASMID 1; Circular SEQUENCE RS:NC_007959 LENGTH 294829 PLASMID 2; Circular SEQUENCE RS:NC_007960 LENGTH 188318 PLASMID 3; Circular SEQUENCE RS:NC_007961 LENGTH 121408 STATISTICS Number of nucleotides: 5011522 Number of protein genes: 4326 Number of RNA genes: 68 REFERENCE PMID:18326675 AUTHORS Starkenburg SR, et al. TITLE Complete genome sequence of Nitrobacter hamburgensis X14 and comparative genomic analysis of species within the genus Nitrobacter. JOURNAL Appl Environ Microbiol 74:2852-63 (2008) /// ENTRY T00349 Complete Genome NAME bci, B.cicadellinicola, BAUCH, 374463 DEFINITION Baumannia cicadellinicola Hc, symbioint of Homalodisca coagulata (glassy-winged sharpshooter) ANNOTATION manual TAXONOMY TAX:374463 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Candidatus Baumannia DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_007984 LENGTH 686194 STATISTICS Number of nucleotides: 686194 Number of protein genes: 595 Number of RNA genes: 46 REFERENCE PMID:16729848 AUTHORS Wu D, et al. TITLE Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters. JOURNAL PLoS Biol 4:e188 (2006) /// ENTRY T00350 Complete Genome NAME pcr, P.cryohalolentis, PSYCK, 335284 DEFINITION Psychrobacter cryohalolentis K5 ANNOTATION manual TAXONOMY TAX:335284 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_007969 LENGTH 3059876 PLASMID p1; Circular SEQUENCE RS:NC_007968 LENGTH 41221 STATISTICS Number of nucleotides: 3101097 Number of protein genes: 2511 Number of RNA genes: 66 /// ENTRY T00351 Complete Genome NAME rme, R.metallidurans, RALME, 266264 DEFINITION Ralstonia metallidurans CH34 ANNOTATION manual TAXONOMY TAX:266264 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_007973 LENGTH 3928089 CHROMOSOME 2; Circular SEQUENCE RS:NC_007974 LENGTH 2580084 PLASMID p1; Circular SEQUENCE RS:NC_007971 LENGTH 233720 PLASMID p2; Circular SEQUENCE RS:NC_007972 LENGTH 171459 STATISTICS Number of nucleotides: 6913352 Number of protein genes: 6319 Number of RNA genes: 86 /// ENTRY T00352 Complete Genome NAME aba, A.bacterium, ACIBL, 204669 DEFINITION Acidobacteria bacterium Ellin345 ANNOTATION manual TAXONOMY TAX:204669 LINEAGE Bacteria; Acidobacteria; Candidatus Koribacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008009 LENGTH 5650368 STATISTICS Number of nucleotides: 5650368 Number of protein genes: 4777 Number of RNA genes: 55 REFERENCE PMID:19201974 AUTHORS Ward NL, et al. TITLE Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. JOURNAL Appl Environ Microbiol 75:2046-56 (2009) /// ENTRY T00353 Complete Genome NAME dge, D.geothermalis, DEIGD, 319795 DEFINITION Deinococcus geothermalis DSM 11300 ANNOTATION manual TAXONOMY TAX:319795 LINEAGE Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008025 LENGTH 2467205 PLASMID p1; Circular SEQUENCE RS:NC_008010 LENGTH 574127 PLASMID pDGEO02 SEQUENCE RS:NC_009939 LENGTH 205686 STATISTICS Number of nucleotides: 3247018 Number of protein genes: 3054 Number of RNA genes: 66 /// ENTRY T00354 Complete Genome NAME lip, L.intracellularis, LAWIP, 363253 DEFINITION Lawsonia intracellularis PHE/MN1-00 ANNOTATION manual TAXONOMY TAX:363253 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Lawsonia DATA_SOURCE RefSeq ORIGINAL_DB U. Minnesota DISEASE Porcine proliferative enteropathy CHROMOSOME Circular SEQUENCE RS:NC_008011 LENGTH 1457619 PLASMID p1; Circular SEQUENCE RS:NC_008012 LENGTH 27048 PLASMID p2; Circular SEQUENCE RS:NC_008013 LENGTH 39794 PLASMID p3; Circular SEQUENCE RS:NC_008014 LENGTH 194553 STATISTICS Number of nucleotides: 1719014 Number of protein genes: 1337 Number of RNA genes: 49 /// ENTRY T00355 Complete Genome NAME sph, S.pyogenes_MGAS10270, STRPD, 370552 DEFINITION Streptococcus pyogenes MGAS10270 (serotype M2) ANNOTATION manual TAXONOMY TAX:370552 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML DISEASE Pharyngitis, necrotizing fasciitis, bacteremia, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_008022 LENGTH 1928252 STATISTICS Number of nucleotides: 1928252 Number of protein genes: 1986 Number of RNA genes: 81 REFERENCE PMID:16636287 AUTHORS Beres SB, et al. TITLE Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus. JOURNAL Proc Natl Acad Sci U S A 103:7059-64 (2006) /// ENTRY T00356 Complete Genome NAME spi, S.pyogenes_MGAS10750, STRPF, 370554 DEFINITION Streptococcus pyogenes MGAS10750 (serotype M4) ANNOTATION manual TAXONOMY TAX:370554 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML DISEASE Pharyngitis, necrotizing fasciitis, bacteremia, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_008024 LENGTH 1937111 STATISTICS Number of nucleotides: 1937111 Number of protein genes: 1979 Number of RNA genes: 81 REFERENCE PMID:16636287 AUTHORS Beres SB, et al. TITLE Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus. JOURNAL Proc Natl Acad Sci U S A 103:7059-64 (2006) /// ENTRY T00357 Complete Genome NAME spj, S.pyogenes_MGAS2096, STRPB, 370553 DEFINITION Streptococcus pyogenes MGAS2096 (serotype M12) ANNOTATION manual TAXONOMY TAX:370553 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML DISEASE Pharyngitis, necrotizing fasciitis, bacteremia, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_008023 LENGTH 1860355 STATISTICS Number of nucleotides: 1860355 Number of protein genes: 1898 Number of RNA genes: 81 REFERENCE PMID:16636287 AUTHORS Beres SB, et al. TITLE Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus. JOURNAL Proc Natl Acad Sci U S A 103:7059-64 (2006) /// ENTRY T00358 Complete Genome NAME spk, S.pyogenes_MGAS9429, STRPC, 370551 DEFINITION Streptococcus pyogenes MGAS9429 (serotype M12) ANNOTATION manual TAXONOMY TAX:370551 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML DISEASE Pharyngitis, necrotizing fasciitis, bacteremia, toxic shock syndrome CHROMOSOME Circular SEQUENCE RS:NC_008021 LENGTH 1836467 STATISTICS Number of nucleotides: 1836467 Number of protein genes: 1877 Number of RNA genes: 85 REFERENCE PMID:16636287 AUTHORS Beres SB, et al. TITLE Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus. JOURNAL Proc Natl Acad Sci U S A 103:7059-64 (2006) /// ENTRY T00359 Complete Genome NAME sit, Silicibacter_TM1040, SILST, 292414 DEFINITION Silicibacter sp. TM1040 ANNOTATION manual TAXONOMY TAX:292414 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria DATA_SOURCE RefSeq ORIGINAL_DB JGI RoseoBase CHROMOSOME Circular SEQUENCE RS:NC_008044 LENGTH 3200938 PLASMID mega; Circular SEQUENCE RS:NC_008043 LENGTH 821788 PLASMID unnamed; Circular SEQUENCE RS:NC_008042 LENGTH 130973 STATISTICS Number of nucleotides: 4153699 Number of protein genes: 3864 Number of RNA genes: 87 REFERENCE PMID:17526795 AUTHORS Moran MA, et al. TITLE Ecological genomics of marine Roseobacters. JOURNAL Appl Environ Microbiol 73:4559-69 (2007) /// ENTRY T00360 Complete Genome NAME xom, X.oryzae_MAFF311018, XANOM, 342109 DEFINITION Xanthomonas oryzae pv. oryzae MAFF 311018 ANNOTATION manual TAXONOMY TAX:342109 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas DATA_SOURCE RefSeq ORIGINAL_DB JIRCAS CHROMOSOME Circular SEQUENCE RS:NC_007705 LENGTH 4940217 STATISTICS Number of nucleotides: 4940217 Number of protein genes: 4372 Number of RNA genes: 59 REFERENCE AUTHORS Ochiai H, et al. TITLE Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity. /// ENTRY T00361 Complete Genome NAME sal, S.alaskensis, SPHAL, 317655 DEFINITION Sphingopyxis alaskensis RB2256 ANNOTATION manual TAXONOMY TAX:317655 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008048 LENGTH 3345170 PLASMID F SEQUENCE RS:NC_008036 LENGTH 28543 STATISTICS Number of nucleotides: 3373713 Number of protein genes: 3195 Number of RNA genes: 52 REFERENCE PMID:19805210 AUTHORS Lauro FM, et al. TITLE The genomic basis of trophic strategy in marine bacteria. JOURNAL Proc Natl Acad Sci U S A 106:15527-33 (2009) /// ENTRY T00362 Complete Genome NAME pen, P.entomophila, PSEE4, 384676 DEFINITION Pseudomonas entomophila L48 ANNOTATION manual TAXONOMY TAX:384676 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_008027 LENGTH 5888780 STATISTICS Number of nucleotides: 5888780 Number of protein genes: 5134 Number of RNA genes: 107 REFERENCE PMID:16699499 AUTHORS Vodovar N, et al. TITLE Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila. JOURNAL Nat Biotechnol 24:673-9 (2006) /// ENTRY T00363 Complete Genome NAME bcn, B.cenocepacia, BURCA, 331271 DEFINITION Burkholderia cenocepacia AU 1054 ANNOTATION manual TAXONOMY TAX:331271 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB JGI JCVI-Pathema DISEASE Opportunistic infections CHROMOSOME 1; Circular SEQUENCE RS:NC_008060 LENGTH 3294563 CHROMOSOME 2; Circular SEQUENCE RS:NC_008061 LENGTH 2788459 CHROMOSOME 3; Circular SEQUENCE RS:NC_008062 LENGTH 1196094 STATISTICS Number of nucleotides: 7279116 Number of protein genes: 6477 Number of RNA genes: 102 /// ENTRY T00364 Complete Genome NAME ldb, L.delbrueckii, LACDA, 390333 DEFINITION Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 ANNOTATION manual TAXONOMY TAX:390333 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_008054 LENGTH 1864998 STATISTICS Number of nucleotides: 1864998 Number of protein genes: 1529 Number of RNA genes: 122 REFERENCE PMID:16754859 AUTHORS van de Guchte M, et al. TITLE The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. JOURNAL Proc Natl Acad Sci U S A 103:9274-9 (2006) /// ENTRY T00365 Complete Genome NAME hpa, H.pylori_HPAG1, HELPH, 357544 DEFINITION Helicobacter pylori HPAG1 ANNOTATION manual TAXONOMY TAX:357544 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq ORIGINAL_DB Washington U DISEASE Helicobacter pylori associated gastritis, superficial gastritis CHROMOSOME Circular SEQUENCE RS:NC_008086 LENGTH 1596366 PLASMID pHPAG1; Circular SEQUENCE RS:NC_008087 LENGTH 9370 STATISTICS Number of nucleotides: 1605736 Number of protein genes: 1540 Number of RNA genes: 42 REFERENCE PMID:16788065 AUTHORS Oh JD, et al. TITLE The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression. JOURNAL Proc Natl Acad Sci U S A 103:9999-10004 (2006) /// ENTRY T00366 Complete Genome NAME mxa, M.xanthus, MYXXD, 246197 DEFINITION Myxococcus xanthus DK 1622 ANNOTATION manual TAXONOMY TAX:246197 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_008095 LENGTH 9139763 STATISTICS Number of nucleotides: 9139763 Number of protein genes: 7331 Number of RNA genes: 79 REFERENCE PMID:17015832 AUTHORS Goldman BS, et al. TITLE Evolution of sensory complexity recorded in a myxobacterial genome. JOURNAL Proc Natl Acad Sci U S A 103:15200-5 (2006) /// ENTRY T00367 Complete Genome NAME mmc, Mycobacterium_MCS, MYCSS, 164756 DEFINITION Mycobacterium sp. MCS ANNOTATION manual TAXONOMY TAX:164756 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008146 LENGTH 5705448 PLASMID plasmid1; Circular SEQUENCE RS:NC_008147 LENGTH 215075 STATISTICS Number of nucleotides: 5920523 Number of protein genes: 5615 Number of RNA genes: 61 /// ENTRY T00368 Complete Genome NAME rxy, R.xylanophilus, RUBXD, 266117 DEFINITION Rubrobacter xylanophilus DSM 9941 ANNOTATION manual TAXONOMY TAX:266117 LINEAGE Bacteria; Actinobacteria; Rubrobacteridae; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008148 LENGTH 3225748 STATISTICS Number of nucleotides: 3225748 Number of protein genes: 3140 Number of RNA genes: 64 /// ENTRY T00369 Complete Genome NAME ypa, Y.pestis_Antiqua, YERPA, 360102 DEFINITION Yersinia pestis Antiqua (biovar Antiqua) ANNOTATION manual TAXONOMY TAX:360102 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Bubonic and pneumonic plagues CHROMOSOME Circular SEQUENCE RS:NC_008150 LENGTH 4702289 PLASMID pMT; Circular SEQUENCE RS:NC_008120 LENGTH 96471 PLASMID pPCP; Circular SEQUENCE RS:NC_008121 LENGTH 10777 PLASMID pCD; Circular SEQUENCE RS:NC_008122 LENGTH 70299 STATISTICS Number of nucleotides: 4879836 Number of protein genes: 4361 Number of RNA genes: 104 REFERENCE PMID:16740952 AUTHORS Chain PS, et al. TITLE Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen. JOURNAL J Bacteriol 188:4453-63 (2006) /// ENTRY T00370 Complete Genome NAME ypn, Y.pestis_Nepal516, YERPN, 377628 DEFINITION Yersinia pestis Nepal516 (biovar Antiqua) ANNOTATION manual TAXONOMY TAX:377628 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Bubonic and pneumonic plagues CHROMOSOME Circular SEQUENCE RS:NC_008149 LENGTH 4534590 PLASMID pMT; Circular SEQUENCE RS:NC_008118 LENGTH 100918 CHROMOSOME pPCP; Circular SEQUENCE RS:NC_008119 LENGTH 10778 STATISTICS Number of nucleotides: 4646286 Number of protein genes: 4091 Number of RNA genes: 108 REFERENCE PMID:16740952 AUTHORS Chain PS, et al. TITLE Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen. JOURNAL J Bacteriol 188:4453-63 (2006) /// ENTRY T00371 Complete Genome NAME hac, H.acinonychis, HELAH, 382638 DEFINITION Helicobacter acinonychis Sheeba ANNOTATION manual TAXONOMY TAX:382638 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq ORIGINAL_DB Penn State CHROMOSOME Circular SEQUENCE RS:NC_008229 LENGTH 1553927 PLASMID pHac1; Circular SEQUENCE RS:NC_008230 LENGTH 3661 STATISTICS Number of nucleotides: 1557588 Number of protein genes: 1618 Number of RNA genes: 42 REFERENCE PMID:16789826 AUTHORS . TITLE Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines. JOURNAL PLoS Genet 2:e120 (2006) /// ENTRY T00372 Complete Genome NAME pat, P.atlantica, PSEA6, 342610 DEFINITION Pseudoalteromonas atlantica T6c ANNOTATION manual TAXONOMY TAX:342610 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008228 LENGTH 5187005 STATISTICS Number of nucleotides: 5187005 Number of protein genes: 4281 Number of RNA genes: 84 /// ENTRY T00373 Complete Genome NAME ecp, E.coli_536, ECOL5, 362663 DEFINITION Escherichia coli 536 (UPEC) ANNOTATION manual TAXONOMY TAX:362663 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Goettingen DISEASE Urinary tract infections CHROMOSOME Circular SEQUENCE RS:NC_008253 LENGTH 4938920 STATISTICS Number of nucleotides: 4938920 Number of protein genes: 4619 Number of RNA genes: 103 REFERENCE PMID:16879640 AUTHORS Hochhut B, et al. TITLE Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. JOURNAL Mol Microbiol 61:584-95 (2006) /// ENTRY T00374 Complete Genome NAME mes, Mesorhizobium_BNC1, MESSB, 266779 DEFINITION Mesorhizobium sp. BNC1 ANNOTATION manual TAXONOMY TAX:266779 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008254 LENGTH 4412446 PLASMID p1; Circular SEQUENCE RS:NC_008242 LENGTH 343931 PLASMID p2; Circular SEQUENCE RS:NC_008243 LENGTH 131247 PLASMID p3; Circular SEQUENCE RS:NC_008244 LENGTH 47561 STATISTICS Number of nucleotides: 4935185 Number of protein genes: 4543 Number of RNA genes: 72 /// ENTRY T00375 Complete Genome NAME hwa, H.walsbyi, HALWD, 362976 DEFINITION Haloquadratum walsbyi DSM 16790 (HBSQ001) ANNOTATION manual TAXONOMY TAX:362976 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloquadratum DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck CHROMOSOME Circular SEQUENCE RS:NC_008212 LENGTH 3132494 PLASMID PL47; Circular SEQUENCE RS:NC_008213 LENGTH 46867 STATISTICS Number of nucleotides: 3179361 Number of protein genes: 2646 Number of RNA genes: 52 REFERENCE PMID:16820047 AUTHORS Bolhuis HH, et al. TITLE The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity. JOURNAL BMC Genomics 7:169 (2006) /// ENTRY T00376 Complete Genome NAME rde, R.denitrificans, ROSDO, 375451 DEFINITION Roseobacter denitrificans OCh 114 ANNOTATION manual TAXONOMY TAX:375451 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter DATA_SOURCE RefSeq ORIGINAL_DB TGEN RoseoBase CHROMOSOME Circular SEQUENCE RS:NC_008209 LENGTH 4133097 PLASMID pTB1; Circular SEQUENCE RS:NC_008386 LENGTH 106469 PLASMID pTB2; Circular SEQUENCE RS:NC_008387 LENGTH 69269 PLASMID pTB3; Circular SEQUENCE RS:NC_008388 LENGTH 16575 PLASMID pTB4; Circular SEQUENCE RS:NC_008389 LENGTH 5824 STATISTICS Number of nucleotides: 4331234 Number of protein genes: 4129 Number of RNA genes: 42 REFERENCE PMID:17098896 AUTHORS Swingley WD, et al. TITLE The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism. JOURNAL J Bacteriol 189:683-90 (2007) /// ENTRY T00377 Complete Genome NAME sfv, S.flexneri_8401, SHIF8, 373384 DEFINITION Shigella flexneri 8401 (serotype 5b) ANNOTATION manual TAXONOMY TAX:373384 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella DATA_SOURCE RefSeq ORIGINAL_DB Beijing DISEASE Dysentery CHROMOSOME Circular SEQUENCE RS:NC_008258 LENGTH 4574284 STATISTICS Number of nucleotides: 4574284 Number of protein genes: 4114 Number of RNA genes: 119 REFERENCE PMID:16822325 AUTHORS Nie H, et al. TITLE Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a. JOURNAL BMC Genomics 7:173 (2006) /// ENTRY T00378 Complete Genome NAME cpf, C.perfringens_ATCC13124, CLOP1, 195103 DEFINITION Clostridium perfringens ATCC 13124 ANNOTATION manual TAXONOMY TAX:195103 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR JCVI-Pathema DISEASE Gas gangrene CHROMOSOME Circular SEQUENCE RS:NC_008261 LENGTH 3256683 STATISTICS Number of nucleotides: 3256683 Number of protein genes: 2876 Number of RNA genes: 117 REFERENCE PMID:16825665 AUTHORS Myers GS, et al. TITLE Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens. JOURNAL Genome Res 16:1031-40 (2006) /// ENTRY T00379 Complete Genome NAME cpr, C.perfringens_SM101, CLOPS, 289380 DEFINITION Clostridium perfringens SM101 ANNOTATION manual TAXONOMY TAX:289380 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR JCVI-Pathema DISEASE Food poisoning CHROMOSOME Circular SEQUENCE RS:NC_008262 LENGTH 2897393 PLASMID p1; Circular SEQUENCE RS:NC_008263 LENGTH 12397 PLASMID p2; Circular SEQUENCE RS:NC_008264 LENGTH 12206 STATISTICS Number of nucleotides: 2921996 Number of protein genes: 2566 Number of RNA genes: 124 REFERENCE PMID:16825665 AUTHORS Myers GS, et al. TITLE Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens. JOURNAL Genome Res 16:1031-40 (2006) /// ENTRY T00380 Complete Genome NAME abo, A.borkumensis, ALCBS, 393595 DEFINITION Alcanivorax borkumensis SK2 ANNOTATION manual TAXONOMY TAX:393595 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld CHROMOSOME Circular SEQUENCE RS:NC_008260 LENGTH 3120143 STATISTICS Number of nucleotides: 3120143 Number of protein genes: 2755 Number of RNA genes: 51 REFERENCE PMID:16878126 AUTHORS Schneiker S, et al. TITLE Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. JOURNAL Nat Biotechnol 24:997-1004 (2006) /// ENTRY T00381 Complete Genome NAME ftf, F.tularensis_FSC198, FRAT1, 393115 DEFINITION Francisella tularensis subsp. tularensis FSC 198 ANNOTATION manual TAXONOMY TAX:393115 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella DATA_SOURCE RefSeq ORIGINAL_DB Birmingham DISEASE Tularemia CHROMOSOME Circular SEQUENCE RS:NC_008245 LENGTH 1892616 STATISTICS Number of nucleotides: 1892616 Number of protein genes: 1605 Number of RNA genes: 48 REFERENCE PMID:17406676 AUTHORS Chaudhuri RR, et al. TITLE Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4. JOURNAL PLoS ONE 2:e352 (2007) /// ENTRY T00382 Complete Genome NAME rha, Rhodococcus_RHA1, RHOSR, 101510 DEFINITION Rhodococcus jostii RHA1 ANNOTATION manual TAXONOMY TAX:101510 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Nocardiaceae; Rhodococcus DATA_SOURCE RefSeq ORIGINAL_DB British Columbia CHROMOSOME SEQUENCE RS:NC_008268 LENGTH 7804765 PLASMID pRHL1 SEQUENCE RS:NC_008269 LENGTH 1123075 PLASMID pRHL2 SEQUENCE RS:NC_008270 LENGTH 442536 PLASMID pRHL3 SEQUENCE RS:NC_008271 LENGTH 332361 STATISTICS Number of nucleotides: 9702737 Number of protein genes: 9145 Number of RNA genes: 65 REFERENCE PMID:17030794 AUTHORS McLeod MP, et al. TITLE The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse. JOURNAL Proc Natl Acad Sci U S A 103:15582-7 (2006) /// ENTRY T00383 Complete Genome NAME baf, B.afzelii, BORAP, 390236 DEFINITION Borrelia afzelii PKo ANNOTATION manual TAXONOMY TAX:390236 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia; Borrelia burgdorferi group DATA_SOURCE RefSeq ORIGINAL_DB FLI DISEASE Lyme disease,Lyme borreliosis CHROMOSOME SEQUENCE RS:NC_008277 LENGTH 905394 PLASMID lp60 SEQUENCE RS:NC_008564 LENGTH 59958 PLASMID lp60-2 SEQUENCE RS:NC_008565 LENGTH 59804 PLASMID lp34 SEQUENCE RS:NC_008566 LENGTH 34273 PLASMID lp32 SEQUENCE RS:NC_008567 LENGTH 32368 PLASMID cp30; Circular SEQUENCE RS:NC_008273 LENGTH 30017 PLASMID lp28 SEQUENCE RS:NC_008568 LENGTH 28533 PLASMID cp27; Circular SEQUENCE RS:NC_008274 LENGTH 26533 PLASMID lp25 SEQUENCE RS:NC_008569 LENGTH 24794 STATISTICS Number of nucleotides: 1201674 Number of protein genes: 1209 Number of RNA genes: 39 REFERENCE PMID:16914037 AUTHORS Glockner G, et al. TITLE Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity. JOURNAL BMC Genomics 7:211 (2006) /// ENTRY T00384 Complete Genome NAME fal, F.alni, FRAAA, 326424 DEFINITION Frankia alni ACN14a ANNOTATION manual TAXONOMY TAX:326424 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Frankiaceae; Frankia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_008278 LENGTH 7497934 STATISTICS Number of nucleotides: 7497934 Number of protein genes: 6707 Number of RNA genes: 62 REFERENCE PMID:17151343 AUTHORS Normand P, et al. TITLE Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. JOURNAL Genome Res 17:7-15 (2007) /// ENTRY T00385 Complete Genome NAME chu, C.hutchinsonii, CYTH3, 269798 DEFINITION Cytophaga hutchinsonii ATCC 33406 ANNOTATION manual TAXONOMY TAX:269798 LINEAGE Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Flexibacteraceae; Cytophaga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008255 LENGTH 4433218 STATISTICS Number of nucleotides: 4433218 Number of protein genes: 3785 Number of RNA genes: 48 REFERENCE PMID:17400776 AUTHORS Xie G, et al. TITLE Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. JOURNAL Appl Environ Microbiol 73:3536-46 (2007) /// ENTRY T00386 Complete Genome NAME hso, H.somnus, HAES1, 205914 DEFINITION Haemophilus somnus (Histophilus somni) 129PT ANNOTATION manual TAXONOMY TAX:205914 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Histophilus DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Systemic disease in cattle (pneumonia, thrombotic meningoencephalitis, myocarditis, septicemia, arthritis, abortion) CHROMOSOME Circular SEQUENCE RS:NC_008309 LENGTH 2007700 PLASMID pHS129; Circular SEQUENCE RS:NC_006298 LENGTH 5178 STATISTICS Number of nucleotides: 2012878 Number of protein genes: 1798 Number of RNA genes: 71 REFERENCE PMID:17172329 AUTHORS Challacombe JF, et al. TITLE Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd. JOURNAL J Bacteriol 189:1890-8 (2007) /// ENTRY T00387 Complete Genome NAME ter, T.erythraeum, TRIEI, 203124 DEFINITION Trichodesmium erythraeum IMS101 ANNOTATION manual TAXONOMY TAX:203124 LINEAGE Bacteria; Cyanobacteria; Oscillatoriales; Trichodesmium DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_008312 LENGTH 7750108 STATISTICS Number of nucleotides: 7750108 Number of protein genes: 4451 Number of RNA genes: 48 /// ENTRY T00388 Complete Genome NAME she, Shewanella_MR-4, SHESM, 60480 DEFINITION Shewanella sp. MR-4 ANNOTATION manual TAXONOMY TAX:60480 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008321 LENGTH 4706287 STATISTICS Number of nucleotides: 4706287 Number of protein genes: 3924 Number of RNA genes: 141 /// ENTRY T00389 Complete Genome NAME shm, Shewanella_MR-7, SHESR, 60481 DEFINITION Shewanella sp. MR-7 ANNOTATION manual TAXONOMY TAX:60481 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008322 LENGTH 4792610 PLASMID plasmid1; Circular SEQUENCE RS:NC_008320 LENGTH 6499 STATISTICS Number of nucleotides: 4799109 Number of protein genes: 4014 Number of RNA genes: 144 /// ENTRY T00390 Complete Genome NAME syg, Synechococcus_CC9311, SYNS3, 64471 DEFINITION Synechococcus sp. CC9311 ANNOTATION manual TAXONOMY TAX:64471 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_008319 LENGTH 2606748 STATISTICS Number of nucleotides: 2606748 Number of protein genes: 2892 Number of RNA genes: 52 REFERENCE PMID:16938853 AUTHORS Palenik B, et al. TITLE Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment. JOURNAL Proc Natl Acad Sci U S A 103:13555-9 (2006) /// ENTRY T00391 Complete Genome NAME aeh, A.ehrlichei, ALHEH, 187272 DEFINITION Alkalilimnicola ehrlichei MLHE-1 ANNOTATION manual TAXONOMY TAX:187272 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008340 LENGTH 3275944 STATISTICS Number of nucleotides: 3275944 Number of protein genes: 2865 Number of RNA genes: 57 /// ENTRY T00392 Complete Genome NAME gbe, G.bethesdensis, GRABC, 391165 DEFINITION Granulobacter bethesdensis CGDNIH1 ANNOTATION manual TAXONOMY TAX:391165 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML DISEASE Chronic Granulomatous Disease CHROMOSOME Circular SEQUENCE RS:NC_008343 LENGTH 2708355 STATISTICS Number of nucleotides: 2708355 Number of protein genes: 2437 Number of RNA genes: 61 REFERENCE PMID:17827295 AUTHORS Greenberg DE, et al. TITLE Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis. JOURNAL J Bacteriol 189:8727-36 (2007) /// ENTRY T00393 Complete Genome NAME net, N.eutropha, NITEC, 335283 DEFINITION Nitrosomonas eutropha C91 ANNOTATION manual TAXONOMY TAX:335283 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008344 LENGTH 2661057 PLASMID plasmid1; Circular SEQUENCE RS:NC_008341 LENGTH 65132 PLASMID plasmid2; Circular SEQUENCE RS:NC_008342 LENGTH 55635 STATISTICS Number of nucleotides: 2781824 Number of protein genes: 2551 Number of RNA genes: 47 REFERENCE PMID:17991028 AUTHORS Stein LY, et al. TITLE Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation. JOURNAL Environ Microbiol 9:2993-3007 (2007) /// ENTRY T00394 Complete Genome NAME mmr, M.maris, MARMM, 394221 DEFINITION Maricaulis maris MCS10 ANNOTATION manual TAXONOMY TAX:394221 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008347 LENGTH 3368780 STATISTICS Number of nucleotides: 3368780 Number of protein genes: 3063 Number of RNA genes: 54 /// ENTRY T00395 Complete Genome NAME sfr, S.frigidimarina, SHEFN, 318167 DEFINITION Shewanella frigidimarina NCIMB 400 ANNOTATION manual TAXONOMY TAX:318167 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008345 LENGTH 4845257 STATISTICS Number of nucleotides: 4845257 Number of protein genes: 4029 Number of RNA genes: 132 /// ENTRY T00396 Complete Genome NAME swo, S.wolfei, SYNWW, 335541 DEFINITION Syntrophomonas wolfei subsp. wolfei str. Goettingen ANNOTATION manual TAXONOMY TAX:335541 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008346 LENGTH 2936195 STATISTICS Number of nucleotides: 2936195 Number of protein genes: 2504 Number of RNA genes: 68 /// ENTRY T00397 Complete Genome NAME hne, H.neptunium, HYPNA, 228405 DEFINITION Hyphomonas neptunium ATCC 15444 ANNOTATION manual TAXONOMY TAX:228405 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_008358 LENGTH 3705021 STATISTICS Number of nucleotides: 3705021 Number of protein genes: 3505 Number of RNA genes: 47 REFERENCE PMID:16980487 AUTHORS Badger JH, et al. TITLE Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. JOURNAL J Bacteriol 188:6841-50 (2006) /// ENTRY T00398 Complete Genome NAME bam, B.cepacia, BURCM, 339670 DEFINITION Burkholderia cepacia AMMD ANNOTATION manual TAXONOMY TAX:339670 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Opportunistic infections CHROMOSOME 1; Circular SEQUENCE RS:NC_008390 LENGTH 3556545 CHROMOSOME 2; Circular SEQUENCE RS:NC_008391 LENGTH 2646969 CHROMOSOME 3; Circular SEQUENCE RS:NC_008392 LENGTH 1281472 PLASMID p1; Circular SEQUENCE RS:NC_008385 LENGTH 43581 STATISTICS Number of nucleotides: 7528567 Number of protein genes: 6610 Number of RNA genes: 90 /// ENTRY T00399 Complete Genome NAME fth, F.tularensis_OSU18, FRATO, 393011 DEFINITION Francisella tularensis subsp. holarctica OSU18 ANNOTATION manual TAXONOMY TAX:393011 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella DATA_SOURCE RefSeq ORIGINAL_DB Baylor DISEASE Tularemia CHROMOSOME Circular SEQUENCE RS:NC_008369 LENGTH 1895727 STATISTICS Number of nucleotides: 1895727 Number of protein genes: 1555 Number of RNA genes: 49 REFERENCE PMID:16980500 AUTHORS Petrosino JF, et al. TITLE Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence. JOURNAL J Bacteriol 188:6977-85 (2006) /// ENTRY T00400 Complete Genome NAME rpe, R.palustris_BisA53, RHOP5, 316055 DEFINITION Rhodopseudomonas palustris BisA53 ANNOTATION manual TAXONOMY TAX:316055 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008435 LENGTH 5505494 STATISTICS Number of nucleotides: 5505494 Number of protein genes: 4878 Number of RNA genes: 58 REFERENCE PMID:19020098 AUTHORS Oda Y, et al. TITLE Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. JOURNAL Proc Natl Acad Sci U S A 105:18543-8 (2008) /// ENTRY T00401 Complete Genome NAME pau, P.aeruginosa_PA14, PSEAB, 208963 DEFINITION Pseudomonas aeruginosa UCBPP-PA14 ANNOTATION manual TAXONOMY TAX:208963 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB MGH Harvard DISEASE Infectious diseases in animals and plants CHROMOSOME Circular SEQUENCE RS:NC_008463 LENGTH 6537648 STATISTICS Number of nucleotides: 6537648 Number of protein genes: 5892 Number of RNA genes: 72 REFERENCE PMID:17038190 AUTHORS Lee DG, et al. TITLE Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial. JOURNAL Genome Biol 7:R90 (2006) /// ENTRY T00402 Complete Genome NAME rle, R.leguminosarum, RHIL3, 216596 DEFINITION Rhizobium leguminosarum bv. viciae 3841 ANNOTATION manual TAXONOMY TAX:216596 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium DATA_SOURCE RefSeq ORIGINAL_DB Sanger GeneDB RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_008380 LENGTH 5057142 PLASMID pRL12; Circular SEQUENCE RS:NC_008378 LENGTH 870021 PLASMID pRL11; Circular SEQUENCE RS:NC_008384 LENGTH 684202 PLASMID pRL10; Circular SEQUENCE RS:NC_008381 LENGTH 488135 PLASMID pRL9; Circular SEQUENCE RS:NC_008379 LENGTH 352782 PLASMID pRL8; Circular SEQUENCE RS:NC_008383 LENGTH 147463 PLASMID pRL7; Circular SEQUENCE RS:NC_008382 LENGTH 151564 STATISTICS Number of nucleotides: 7751309 Number of protein genes: 7143 Number of RNA genes: 61 REFERENCE PMID:16640791 AUTHORS Young JP, et al. TITLE The genome of Rhizobium leguminosarum has recognizable core and accessory components. JOURNAL Genome Biol 7:R34 (2006) /// ENTRY T00403 Complete Genome NAME crp, C.ruddii, CARRP, 387662 DEFINITION Candidatus Carsonella ruddii PV, endosymbiont of Pachypsylla venusta (hackberry petiole gall psyllid) ANNOTATION manual TAXONOMY TAX:387662 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Candidatus Carsonella DATA_SOURCE RefSeq ORIGINAL_DB Kitasato CHROMOSOME Circular SEQUENCE RS:NC_008512 LENGTH 159662 STATISTICS Number of nucleotides: 159662 Number of protein genes: 182 Number of RNA genes: 31 REFERENCE PMID:17038615 AUTHORS Nakabachi A, et al. TITLE The 160-kilobase genome of the bacterial endosymbiont Carsonella. JOURNAL Science 314:267 (2006) /// ENTRY T00404 Complete Genome NAME lbj, L.borgpetersenii_JB197, LEPBJ, 355277 DEFINITION Leptospira borgpetersenii serovar Hardjo-bovis JB197 ANNOTATION manual TAXONOMY TAX:355277 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira DATA_SOURCE RefSeq ORIGINAL_DB Monash U DISEASE Leptospirosis CHROMOSOME 1; Circular SEQUENCE RS:NC_008510 LENGTH 3576473 CHROMOSOME 2; Circular SEQUENCE RS:NC_008511 LENGTH 299762 STATISTICS Number of nucleotides: 3876235 Number of protein genes: 2880 Number of RNA genes: 42 REFERENCE PMID:16973745 AUTHORS Bulach DM, et al. TITLE Genome reduction in Leptospira borgpetersenii reflects limited transmission potential. JOURNAL Proc Natl Acad Sci U S A 103:14560-5 (2006) /// ENTRY T00405 Complete Genome NAME lbl, L.borgpetersenii_L550, LEPBL, 355276 DEFINITION Leptospira borgpetersenii serovar Hardjo-bovis L550 ANNOTATION manual TAXONOMY TAX:355276 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira DATA_SOURCE RefSeq ORIGINAL_DB Monash U DISEASE Leptospirosis CHROMOSOME 1; Circular SEQUENCE RS:NC_008508 LENGTH 3614446 CHROMOSOME 2; Circular SEQUENCE RS:NC_008509 LENGTH 317336 STATISTICS Number of nucleotides: 3931782 Number of protein genes: 2945 Number of RNA genes: 42 REFERENCE PMID:16973745 AUTHORS Bulach DM, et al. TITLE Genome reduction in Leptospira borgpetersenii reflects limited transmission potential. JOURNAL Proc Natl Acad Sci U S A 103:14560-5 (2006) /// ENTRY T00406 Complete Genome NAME lbr, L.brevis, LACBA, 387344 DEFINITION Lactobacillus brevis ATCC 367 ANNOTATION manual TAXONOMY TAX:387344 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008497 LENGTH 2291220 PLASMID p1; Circular SEQUENCE RS:NC_008498 LENGTH 13413 PLASMID p2; Circular SEQUENCE RS:NC_008499 LENGTH 35595 STATISTICS Number of nucleotides: 2340228 Number of protein genes: 2218 Number of RNA genes: 81 REFERENCE PMID:17030793 AUTHORS Makarova K, et al. TITLE Comparative genomics of the lactic acid bacteria. JOURNAL Proc Natl Acad Sci U S A 103:15611-6 (2006) /// ENTRY T00407 Complete Genome NAME lca, L.casei, LACC3, 321967 DEFINITION Lactobacillus casei ATCC 334 ANNOTATION manual TAXONOMY TAX:321967 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008526 LENGTH 2895264 PLASMID p1; Circular SEQUENCE RS:NC_008502 LENGTH 29061 STATISTICS Number of nucleotides: 2924325 Number of protein genes: 2768 Number of RNA genes: 75 REFERENCE PMID:17030793 AUTHORS Makarova K, et al. TITLE Comparative genomics of the lactic acid bacteria. JOURNAL Proc Natl Acad Sci U S A 103:15611-6 (2006) /// ENTRY T00408 Complete Genome NAME ooe, O.oeni, OENOB, 203123 DEFINITION Oenococcus oeni PSU-1 ANNOTATION manual TAXONOMY TAX:203123 LINEAGE Bacteria; Firmicutes; Lactobacillales; Oenococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008528 LENGTH 1780517 STATISTICS Number of nucleotides: 1780517 Number of protein genes: 1691 Number of RNA genes: 50 REFERENCE PMID:17030793 AUTHORS Makarova K, et al. TITLE Comparative genomics of the lactic acid bacteria. JOURNAL Proc Natl Acad Sci U S A 103:15611-6 (2006) /// ENTRY T00409 Complete Genome NAME ppe, P.pentosaceus, PEDPA, 278197 DEFINITION Pediococcus pentosaceus ATCC 25745 ANNOTATION manual TAXONOMY TAX:278197 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Pediococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008525 LENGTH 1832387 STATISTICS Number of nucleotides: 1832387 Number of protein genes: 1755 Number of RNA genes: 71 REFERENCE PMID:17030793 AUTHORS Makarova K, et al. TITLE Comparative genomics of the lactic acid bacteria. JOURNAL Proc Natl Acad Sci U S A 103:15611-6 (2006) /// ENTRY T00410 Complete Genome NAME lga, L.gasseri, LACGA, 324831 DEFINITION Lactobacillus gasseri ATCC 33323 ANNOTATION manual TAXONOMY TAX:324831 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008530 LENGTH 1894360 STATISTICS Number of nucleotides: 1894360 Number of protein genes: 1755 Number of RNA genes: 97 REFERENCE PMID:17030793 AUTHORS Makarova K, et al. TITLE Comparative genomics of the lactic acid bacteria. JOURNAL Proc Natl Acad Sci U S A 103:15611-6 (2006) /// ENTRY T00411 Complete Genome NAME lme, L.mesenteroides, LEUMM, 203120 DEFINITION Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ANNOTATION manual TAXONOMY TAX:203120 LINEAGE Bacteria; Firmicutes; Lactobacillales; Leuconostoc DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008531 LENGTH 2038396 PLASMID pLEUM1; Circular SEQUENCE RS:NC_008496 LENGTH 37367 STATISTICS Number of nucleotides: 2075763 Number of protein genes: 2005 Number of RNA genes: 84 REFERENCE PMID:17030793 AUTHORS Makarova K, et al. TITLE Comparative genomics of the lactic acid bacteria. JOURNAL Proc Natl Acad Sci U S A 103:15611-6 (2006) /// ENTRY T00412 Complete Genome NAME sus, S.usitatus, SOLUE, 234267 DEFINITION Solibacter usitatus Ellin6076 ANNOTATION manual TAXONOMY TAX:234267 LINEAGE Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008536 LENGTH 9965640 STATISTICS Number of nucleotides: 9965640 Number of protein genes: 7826 Number of RNA genes: 62 REFERENCE PMID:19201974 AUTHORS Ward NL, et al. TITLE Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. JOURNAL Appl Environ Microbiol 75:2046-56 (2009) /// ENTRY T00413 Complete Genome NAME spd, S.pneumoniae_D39, STRP2, 373153 DEFINITION Streptococcus pneumoniae D39 (virulent serotype 2) ANNOTATION manual TAXONOMY TAX:373153 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Indiana U DISEASE Serious mucosal and invasive diseases, including pneumonia, otitis media, sinusitis, meningitis, and septicemia CHROMOSOME Circular SEQUENCE RS:NC_008533 LENGTH 2046115 STATISTICS Number of nucleotides: 2046115 Number of protein genes: 1914 Number of RNA genes: 72 REFERENCE PMID:17041037 AUTHORS Lanie JA, et al. TITLE Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6. JOURNAL J Bacteriol 189:38-51 (2007) /// ENTRY T00414 Complete Genome NAME ste, S.thermophilus_LMD9, STRTD, 322159 DEFINITION Streptococcus thermophilus LMD-9 ANNOTATION manual TAXONOMY TAX:322159 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008532 LENGTH 1856368 PLASMID p1; Circular SEQUENCE RS:NC_008500 LENGTH 4449 PLASMID p2; Circular SEQUENCE RS:NC_008501 LENGTH 3361 STATISTICS Number of nucleotides: 1864178 Number of protein genes: 1715 Number of RNA genes: 86 REFERENCE PMID:17030793 AUTHORS Makarova K, et al. TITLE Comparative genomics of the lactic acid bacteria. JOURNAL Proc Natl Acad Sci U S A 103:15611-6 (2006) /// ENTRY T00415 Complete Genome NAME bch, B.cenocepacia_HI2424, BURCH, 331272 DEFINITION Burkholderia cenocepacia HI2424 ANNOTATION manual TAXONOMY TAX:331272 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Opportunistic infections CHROMOSOME 1; Circular SEQUENCE RS:NC_008542 LENGTH 3483902 CHROMOSOME 2; Circular SEQUENCE RS:NC_008543 LENGTH 2998664 CHROMOSOME 3; Circular SEQUENCE RS:NC_008544 LENGTH 1055417 PLASMID p1; Circular SEQUENCE RS:NC_008545 LENGTH 164857 STATISTICS Number of nucleotides: 7702840 Number of protein genes: 6919 Number of RNA genes: 87 /// ENTRY T00416 Complete Genome NAME reh, R.eutropha_H16, RALEH, 381666 DEFINITION Ralstonia eutropha H16 ANNOTATION manual TAXONOMY TAX:381666 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus DATA_SOURCE RefSeq ORIGINAL_DB Goettingen CHROMOSOME 1; Circular SEQUENCE RS:NC_008313 LENGTH 4052032 CHROMOSOME 2; Circular SEQUENCE RS:NC_008314 LENGTH 2912490 PLASMID pHG1; Circular SEQUENCE RS:NC_005241 LENGTH 452156 STATISTICS Number of nucleotides: 7416678 Number of protein genes: 6626 Number of RNA genes: 73 REFERENCE PMID:16964242 AUTHORS Pohlmann A, et al. TITLE Genome sequence of the bioplastic-producing "Knallgas" bacterium Ralstonia eutropha H16. JOURNAL Nat Biotechnol 24:1257-1262 (2006) /// ENTRY T00417 Complete Genome NAME mtp, M.thermophila, METTP, 349307 DEFINITION Methanosaeta thermophila PT ANNOTATION manual TAXONOMY TAX:349307 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008553 LENGTH 1879471 STATISTICS Number of nucleotides: 1879471 Number of protein genes: 1696 Number of RNA genes: 51 /// ENTRY T00418 Complete Genome NAME sfu, S.fumaroxidans, SYNFM, 335543 DEFINITION Syntrophobacter fumaroxidans MPOB ANNOTATION manual TAXONOMY TAX:335543 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008554 LENGTH 4990251 STATISTICS Number of nucleotides: 4990251 Number of protein genes: 4064 Number of RNA genes: 63 /// ENTRY T00419 Complete Genome NAME lbu, L.delbrueckii_BAA-365, LACDB, 321956 DEFINITION Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 ANNOTATION manual TAXONOMY TAX:321956 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008529 LENGTH 1856951 STATISTICS Number of nucleotides: 1856951 Number of protein genes: 1715 Number of RNA genes: 126 REFERENCE PMID:17030793 AUTHORS Makarova K, et al. TITLE Comparative genomics of the lactic acid bacteria. JOURNAL Proc Natl Acad Sci U S A 103:15611-6 (2006) /// ENTRY T00420 Complete Genome NAME llc, L.lactis_SK11, LACLS, 272622 DEFINITION Lactococcus lactis subsp. cremoris SK11 ANNOTATION manual TAXONOMY TAX:272622 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Lactococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008527 LENGTH 2438589 PLASMID p1; Circular SEQUENCE RS:NC_008503 LENGTH 14041 PLASMID p2; Circular SEQUENCE RS:NC_008504 LENGTH 9554 PLASMID p3; Circular SEQUENCE RS:NC_008505 LENGTH 74750 PLASMID p4; Circular SEQUENCE RS:NC_008506 LENGTH 47208 PLASMID p5; Circular SEQUENCE RS:NC_008507 LENGTH 14206 STATISTICS Number of nucleotides: 2598348 Number of protein genes: 2504 Number of RNA genes: 84 REFERENCE PMID:17030793 AUTHORS Makarova K, et al. TITLE Comparative genomics of the lactic acid bacteria. JOURNAL Proc Natl Acad Sci U S A 103:15611-6 (2006) /// ENTRY T00421 Complete Genome NAME art, Arthrobacter_FB24, ARTS2, 290399 DEFINITION Arthrobacter sp. FB24 ANNOTATION manual TAXONOMY TAX:290399 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Arthrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_008541 LENGTH 4698945 PLASMID p1; Circular SEQUENCE RS:NC_008537 LENGTH 159538 PLASMID p2; Circular SEQUENCE RS:NC_008538 LENGTH 115507 PLASMID p3; Circular SEQUENCE RS:NC_008539 LENGTH 96488 STATISTICS Number of nucleotides: 5070478 Number of protein genes: 4506 Number of RNA genes: 68 /// ENTRY T00422 Complete Genome NAME lwe, L.welshimeri, LISW6, 386043 DEFINITION Listeria welshimeri SLCC5334 (serotype 6b) ANNOTATION manual TAXONOMY TAX:386043 LINEAGE Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria DATA_SOURCE RefSeq ORIGINAL_DB JLU Giessen CHROMOSOME Circular SEQUENCE RS:NC_008555 LENGTH 2814130 STATISTICS Number of nucleotides: 2814130 Number of protein genes: 2774 Number of RNA genes: 84 REFERENCE PMID:16936040 AUTHORS Hain T, et al. TITLE Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. JOURNAL J Bacteriol 188:7405-15 (2006) /// ENTRY T00423 Complete Genome NAME bcc, B.aphidicola_Cc, BUCCC, 372461 DEFINITION Buchnera aphidicola Cc, endosymbiont of Cinara cedri ANNOTATION manual TAXONOMY TAX:372461 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera DATA_SOURCE RefSeq ORIGINAL_DB Valencia CHROMOSOME Circular SEQUENCE RS:NC_008513 LENGTH 416380 PLASMID pLeu-BCc; Circular SEQUENCE RS:NC_011878 LENGTH 6054 STATISTICS Number of nucleotides: 422434 Number of protein genes: 362 Number of RNA genes: 37 REFERENCE PMID:17038625 AUTHORS Perez-Brocal V, et al. TITLE A small microbial genome: the end of a long symbiotic relationship? JOURNAL Science 314:312-3 (2006) /// ENTRY T00424 Complete Genome NAME aha, A.hydrophila, AERHH, 380703 DEFINITION Aeromonas hydrophila subsp. hydrophila ATCC 7966 ANNOTATION manual TAXONOMY TAX:380703 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Various infections caused by the polluted water CHROMOSOME Circular SEQUENCE RS:NC_008570 LENGTH 4744448 STATISTICS Number of nucleotides: 4744448 Number of protein genes: 4121 Number of RNA genes: 160 REFERENCE PMID:16980456 AUTHORS Seshadri R, et al. TITLE Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades. JOURNAL J Bacteriol 188:8272-82 (2006) /// ENTRY T00425 Complete Genome NAME ecv, E.coli_APEC, ECOK1, 405955 DEFINITION Escherichia coli APEC O1 (avian pathogenic Escherichia coli) ANNOTATION manual TAXONOMY TAX:405955 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Iowa State CHROMOSOME Circular SEQUENCE RS:NC_008563 LENGTH 5082025 PLASMID pAPEC-O1-R; Circular SEQUENCE RS:NC_009838 LENGTH 241387 PLASMID pAPEC-O1-ColBM; Circular SEQUENCE RS:NC_009837 LENGTH 174241 STATISTICS Number of nucleotides: 5497653 Number of protein genes: 4851 Number of RNA genes: 114 REFERENCE PMID:17293413 AUTHORS Johnson TJ, et al. TITLE The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. JOURNAL J Bacteriol 189:3228-36 (2007) /// ENTRY T00426 Complete Genome NAME ace, A.cellulolyticus, ACIC1, 351607 DEFINITION Acidothermus cellulolyticus 11B ANNOTATION manual TAXONOMY TAX:351607 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Acidothermaceae; Acidothermus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008578 LENGTH 2443540 STATISTICS Number of nucleotides: 2443540 Number of protein genes: 2157 Number of RNA genes: 56 REFERENCE PMID:19270083 AUTHORS Barabote RD, et al. TITLE Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. JOURNAL Genome Res 19:1033-43 (2009) /// ENTRY T00427 Complete Genome NAME mgm, Magnetococcus_MC1, MAGSM, 156889 DEFINITION Magnetococcus sp. MC-1 ANNOTATION manual TAXONOMY TAX:156889 LINEAGE Bacteria; Proteobacteria; Magnetococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008576 LENGTH 4719581 STATISTICS Number of nucleotides: 4719581 Number of protein genes: 3716 Number of RNA genes: 57 REFERENCE PMID:19465526 AUTHORS Schubbe S, et al. TITLE Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1. JOURNAL Appl Environ Microbiol 75:4835-52 (2009) /// ENTRY T00428 Complete Genome NAME shn, Shewanella_ANA3, SHESA, 94122 DEFINITION Shewanella sp. ANA-3 ANNOTATION manual TAXONOMY TAX:94122 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008577 LENGTH 4972204 PLASMID p1; Circular SEQUENCE RS:NC_008573 LENGTH 278942 STATISTICS Number of nucleotides: 5251146 Number of protein genes: 4360 Number of RNA genes: 135 /// ENTRY T00429 Complete Genome NAME btl, B.thuringiensis_AlHakam, BACAH, 412694 DEFINITION Bacillus thuringiensis Al Hakam ANNOTATION manual TAXONOMY TAX:412694 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JGI JCVI-Pathema CHROMOSOME Circular SEQUENCE RS:NC_008600 LENGTH 5257091 PLASMID pALH1; Circular SEQUENCE RS:NC_008598 LENGTH 55939 STATISTICS Number of nucleotides: 5313030 Number of protein genes: 4798 Number of RNA genes: 146 REFERENCE PMID:17337577 AUTHORS Challacombe JF, et al. TITLE The complete genome sequence of Bacillus thuringiensis Al Hakam. JOURNAL J Bacteriol 189:3680-1 (2007) /// ENTRY T00430 Complete Genome NAME cff, C.fetus, CAMFF, 360106 DEFINITION Campylobacter fetus subsp. fetus 82-40 ANNOTATION manual TAXONOMY TAX:360106 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR DISEASE Septic fever, mycotic aneurysm, endocarditis, meningitis, cholecystitis CHROMOSOME Circular SEQUENCE RS:NC_008599 LENGTH 1773615 STATISTICS Number of nucleotides: 1773615 Number of protein genes: 1719 Number of RNA genes: 51 /// ENTRY T00431 Complete Genome NAME cno, C.novyi, CLONN, 386415 DEFINITION Clostridium novyi NT ANNOTATION manual TAXONOMY TAX:386415 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Jonhs Hopkins JCVI-Pathema DISEASE Gas gangrene CHROMOSOME Circular SEQUENCE RS:NC_008593 LENGTH 2547720 STATISTICS Number of nucleotides: 2547720 Number of protein genes: 2315 Number of RNA genes: 112 REFERENCE PMID:17115055 AUTHORS Bettegowda C, et al. TITLE The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT. JOURNAL Nat Biotechnol 24:1573-1580 (2006) /// ENTRY T00432 Complete Genome NAME ftn, F.tularensis_U112, FRATN, 401614 DEFINITION Francisella novicida U112 ANNOTATION manual TAXONOMY TAX:401614 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella DATA_SOURCE RefSeq ORIGINAL_DB U Washington CHROMOSOME Circular SEQUENCE RS:NC_008601 LENGTH 1910031 STATISTICS Number of nucleotides: 1910031 Number of protein genes: 1719 Number of RNA genes: 48 REFERENCE PMID:17550600 AUTHORS Rohmer L, et al. TITLE Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. JOURNAL Genome Biol 8:R102 (2007) /// ENTRY T00433 Complete Genome NAME mav, M.avium_104, MYCA1, 243243 DEFINITION Mycobacterium avium 104 ANNOTATION manual TAXONOMY TAX:243243 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC) DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Opportunistic infections CHROMOSOME Circular SEQUENCE RS:NC_008595 LENGTH 5475491 STATISTICS Number of nucleotides: 5475491 Number of protein genes: 5120 Number of RNA genes: 50 /// ENTRY T00434 Complete Genome NAME msm, M.smegmatis, MYCS2, 246196 DEFINITION Mycobacterium smegmatis MC2 155 ANNOTATION manual TAXONOMY TAX:246196 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_008596 LENGTH 6988209 STATISTICS Number of nucleotides: 6988209 Number of protein genes: 6716 Number of RNA genes: 54 /// ENTRY T00435 Complete Genome NAME mul, M.ulcerans, MYCUA, 362242 DEFINITION Mycobacterium ulcerans Agy99 ANNOTATION manual TAXONOMY TAX:362242 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB Pasteur DISEASE Buruli ulcer CHROMOSOME Circular SEQUENCE RS:NC_008611 LENGTH 5631606 PLASMID pMUM001; Circular SEQUENCE RS:NC_005916 LENGTH 174155 STATISTICS Number of nucleotides: 5805761 Number of protein genes: 4241 Number of RNA genes: 50 REFERENCE PMID:17210928 AUTHORS Stinear TP, et al. TITLE Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer. JOURNAL Genome Res 17:192-200 (2007) /// ENTRY T00436 Complete Genome NAME ppd, P.propionicus, PELPD, 338966 DEFINITION Pelobacter propionicus DSM 2379 ANNOTATION manual TAXONOMY TAX:338966 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008609 LENGTH 4008000 PLASMID pPRO1; Circular SEQUENCE RS:NC_008607 LENGTH 202397 PLASMID pPRO2; Circular SEQUENCE RS:NC_008608 LENGTH 30722 STATISTICS Number of nucleotides: 4241119 Number of protein genes: 3804 Number of RNA genes: 67 /// ENTRY T00437 Complete Genome NAME bad, B.adolescentis, BIFAA, 367928 DEFINITION Bifidobacterium adolescentis ATCC 15703 ANNOTATION manual TAXONOMY TAX:367928 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium DATA_SOURCE RefSeq ORIGINAL_DB Gifu Japan CHROMOSOME Circular SEQUENCE RS:NC_008618 LENGTH 2089645 STATISTICS Number of nucleotides: 2089645 Number of protein genes: 1631 Number of RNA genes: 70 /// ENTRY T00438 Complete Genome NAME rma, R.magnifica, RUTMC, 413404 DEFINITION Candidatus Ruthia magnifica Cm, endosymbiont of Calyptogena magnifica (hydrothermal vent clam) ANNOTATION manual TAXONOMY TAX:413404 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008610 LENGTH 1160782 STATISTICS Number of nucleotides: 1160782 Number of protein genes: 976 Number of RNA genes: 41 REFERENCE PMID:17303757 AUTHORS Newton IL, et al. TITLE The Calyptogena magnifica chemoautotrophic symbiont genome. JOURNAL Science 315:998-1000 (2007) /// ENTRY T00439 Complete Genome NAME cph, C.phaeobacteroides, CHLPD, 290317 DEFINITION Chlorobium phaeobacteroides DSM 266 ANNOTATION manual TAXONOMY TAX:290317 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008639 LENGTH 3133902 STATISTICS Number of nucleotides: 3133902 Number of protein genes: 2650 Number of RNA genes: 56 /// ENTRY T00440 Complete Genome NAME pde, P.denitrificans, PARDP, 318586 DEFINITION Paracoccus denitrificans PD1222 ANNOTATION manual TAXONOMY TAX:318586 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_008686 LENGTH 2852282 CHROMOSOME 2; Circular SEQUENCE RS:NC_008687 LENGTH 1730097 CHROMOSOME 3; Circular SEQUENCE RS:NC_008688 LENGTH 653815 STATISTICS Number of nucleotides: 5236194 Number of protein genes: 5077 Number of RNA genes: 55 /// ENTRY T00441 Complete Genome NAME azo, Azoarcus_BH72, AZOSB, 62928 DEFINITION Azoarcus sp. BH72 ANNOTATION manual TAXONOMY TAX:62928 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus DATA_SOURCE RefSeq ORIGINAL_DB MPI-Bremen RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_008702 LENGTH 4376040 STATISTICS Number of nucleotides: 4376040 Number of protein genes: 3989 Number of RNA genes: 68 REFERENCE PMID:17057704 AUTHORS Krause A, et al. TITLE Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72. JOURNAL Nat Biotechnol 24:1385-91 (2006) /// ENTRY T00442 Complete Genome NAME mkm, Mycobacterium_KMS, MYCSK, 189918 DEFINITION Mycobacterium sp. KMS ANNOTATION manual TAXONOMY TAX:189918 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008705 LENGTH 5737227 PLASMID pMKMS01; Circular SEQUENCE RS:NC_008703 LENGTH 302089 PLASMID pMKMS02; Circular SEQUENCE RS:NC_008704 LENGTH 216763 STATISTICS Number of nucleotides: 6256079 Number of protein genes: 5975 Number of RNA genes: 57 /// ENTRY T00443 Complete Genome NAME nca, Nocardioides_JS614, NOCSJ, 196162 DEFINITION Nocardioides sp. JS614 ANNOTATION manual TAXONOMY TAX:196162 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Propionibacterineae; Nocardioidaceae; Nocardioides DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008699 LENGTH 4985871 PLASMID pNOCA01; Circular SEQUENCE RS:NC_008697 LENGTH 307814 STATISTICS Number of nucleotides: 5293685 Number of protein genes: 4909 Number of RNA genes: 55 /// ENTRY T00444 Complete Genome NAME pis, P.islandicum, PYRIL, 384616 DEFINITION Pyrobaculum islandicum DSM 4184 ANNOTATION manual TAXONOMY TAX:384616 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008701 LENGTH 1826402 STATISTICS Number of nucleotides: 1826402 Number of protein genes: 1978 Number of RNA genes: 48 /// ENTRY T00445 Complete Genome NAME saz, S.amazonensis, SHEAM, 326297 DEFINITION Shewanella amazonensis SB2B ANNOTATION manual TAXONOMY TAX:326297 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008700 LENGTH 4306142 STATISTICS Number of nucleotides: 4306142 Number of protein genes: 3645 Number of RNA genes: 129 /// ENTRY T00446 Complete Genome NAME tpe, T.pendens, THEPD, 368408 DEFINITION Thermofilum pendens Hrk 5 ANNOTATION manual TAXONOMY TAX:368408 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008698 LENGTH 1781889 PLASMID pTPEN01; Circular SEQUENCE RS:NC_008696 LENGTH 31504 STATISTICS Number of nucleotides: 1813393 Number of protein genes: 1876 Number of RNA genes: 40 REFERENCE PMID:18263724 AUTHORS Anderson I, et al. TITLE Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. JOURNAL J Bacteriol 190:2957-65 (2008) /// ENTRY T00447 Complete Genome NAME aau, A.aurescens, ARTAT, 290340 DEFINITION Arthrobacter aurescens TC1 ANNOTATION manual TAXONOMY TAX:290340 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Arthrobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_008711 LENGTH 4597686 PLASMID TC1; Circular SEQUENCE RS:NC_008712 LENGTH 328237 CHROMOSOME TC2; Circular SEQUENCE RS:NC_008713 LENGTH 300725 STATISTICS Number of nucleotides: 5226648 Number of protein genes: 4587 Number of RNA genes: 73 REFERENCE PMID:17194220 AUTHORS Mongodin EF, et al. TITLE Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1. JOURNAL PLoS Genet 2:e214 (2006) /// ENTRY T00448 Complete Genome NAME gfo, G.forsetii, GRAFK, 411154 DEFINITION Gramella forsetii KT0803 ANNOTATION manual TAXONOMY TAX:411154 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Flavobacteriaceae; Gramella DATA_SOURCE RefSeq ORIGINAL_DB MPI-Bremen CHROMOSOME Circular SEQUENCE RS:NC_008571 LENGTH 3798465 STATISTICS Number of nucleotides: 3798465 Number of protein genes: 3584 Number of RNA genes: 53 REFERENCE PMID:17107561 AUTHORS Bauer M, et al. TITLE Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. JOURNAL Environ Microbiol 8:2201-13 (2006) /// ENTRY T00449 Complete Genome NAME mva, M.vanbaalenii, MYCVP, 350058 DEFINITION Mycobacterium vanbaalenii PYR-1 ANNOTATION manual TAXONOMY TAX:350058 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008726 LENGTH 6491865 STATISTICS Number of nucleotides: 6491865 Number of protein genes: 5979 Number of RNA genes: 58 /// ENTRY T00450 Complete Genome NAME pin, P.ingrahamii, PSYIN, 357804 DEFINITION Psychromonas ingrahamii 37 ANNOTATION manual TAXONOMY TAX:357804 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Psychromonadaceae; Psychromonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008709 LENGTH 4559598 STATISTICS Number of nucleotides: 4559598 Number of protein genes: 3545 Number of RNA genes: 119 /// ENTRY T00451 Complete Genome NAME aav, A.avenae, ACIAC, 397945 DEFINITION Acidovorax avenae subsp. citrulli AAC00-1 ANNOTATION manual TAXONOMY TAX:397945 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008752 LENGTH 5352772 STATISTICS Number of nucleotides: 5352772 Number of protein genes: 4709 Number of RNA genes: 65 /// ENTRY T00452 Complete Genome NAME dvl, D.vulgaris_DP4, DESVV, 391774 DEFINITION Desulfovibrio vulgaris subsp. vulgaris DP4 ANNOTATION manual TAXONOMY TAX:391774 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008751 LENGTH 3462887 PLASMID pDVUL01; Circular SEQUENCE RS:NC_008741 LENGTH 198504 STATISTICS Number of nucleotides: 3661391 Number of protein genes: 3091 Number of RNA genes: 87 /// ENTRY T00453 Complete Genome NAME shw, Shewanella_W3-18-1, SHESW, 351745 DEFINITION Shewanella sp. W3-18-1 ANNOTATION manual TAXONOMY TAX:351745 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008750 LENGTH 4708380 STATISTICS Number of nucleotides: 4708380 Number of protein genes: 4044 Number of RNA genes: 128 /// ENTRY T00454 Complete Genome NAME maq, M.aquaeolei, MARAV, 351348 DEFINITION Marinobacter aquaeolei VT8 ANNOTATION manual TAXONOMY TAX:351348 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008740 LENGTH 4326849 PLASMID pMAQU01; Circular SEQUENCE RS:NC_008738 LENGTH 239623 PLASMID pMAQU02; Circular SEQUENCE RS:NC_008739 LENGTH 213290 STATISTICS Number of nucleotides: 4779762 Number of protein genes: 4272 Number of RNA genes: 63 /// ENTRY T00455 Complete Genome NAME ajs, Acidovorax_JS42, ACISJ, 232721 DEFINITION Acidovorax sp. JS42 ANNOTATION manual TAXONOMY TAX:232721 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008782 LENGTH 4448856 PLASMID pAOVO01; Circular SEQUENCE RS:NC_008765 LENGTH 72689 PLASMID pAOVO02; Circular SEQUENCE RS:NC_008766 LENGTH 63609 STATISTICS Number of nucleotides: 4585154 Number of protein genes: 4155 Number of RNA genes: 63 /// ENTRY T00456 Complete Genome NAME bbk, B.bacilliformis, BARBK, 360095 DEFINITION Bartonella bacilliformis KC583 ANNOTATION manual TAXONOMY TAX:360095 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR DISEASE Carrion's disease, Oroya fever CHROMOSOME Circular SEQUENCE RS:NC_008783 LENGTH 1445021 STATISTICS Number of nucleotides: 1445021 Number of protein genes: 1283 Number of RNA genes: 51 /// ENTRY T00457 Complete Genome NAME bmv, B.mallei_SAVP1, BURMS, 320388 DEFINITION Burkholderia mallei SAVP1 ANNOTATION manual TAXONOMY TAX:320388 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR JCVI-Pathema DISEASE Glanders, pneumonia CHROMOSOME I; Circular SEQUENCE RS:NC_008785 LENGTH 3497479 CHROMOSOME II; Circular SEQUENCE RS:NC_008784 LENGTH 1734922 STATISTICS Number of nucleotides: 5232401 Number of protein genes: 5188 Number of RNA genes: 66 /// ENTRY T00458 Complete Genome NAME nmc, N.meningitidis_FAM18, NEIMF, 272831 DEFINITION Neisseria meningitidis FAM18 (serogroup C) ANNOTATION manual TAXONOMY TAX:272831 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Septicaemia, meningitis CHROMOSOME Circular SEQUENCE RS:NC_008767 LENGTH 2194961 STATISTICS Number of nucleotides: 2194961 Number of protein genes: 1917 Number of RNA genes: 71 REFERENCE PMID:17305430 AUTHORS Bentley SD, et al. TITLE Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18. JOURNAL PLoS Genet 3:e23 (2007) /// ENTRY T00459 Complete Genome NAME pna, P.naphthalenivorans, POLNA, 365044 DEFINITION Polaromonas naphthalenivorans CJ2 ANNOTATION manual TAXONOMY TAX:365044 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008781 LENGTH 4410291 PLASMID pPNAP01; Circular SEQUENCE RS:NC_008757 LENGTH 353291 PLASMID pPNAP02; Circular SEQUENCE RS:NC_008758 LENGTH 190172 PLASMID pPNAP03; Circular SEQUENCE RS:NC_008759 LENGTH 171866 PLASMID pPNAP04; Circular SEQUENCE RS:NC_008760 LENGTH 143747 PLASMID pPNAP05; Circular SEQUENCE RS:NC_008761 LENGTH 58808 PLASMID pPNAP06; Circular SEQUENCE RS:NC_008762 LENGTH 21611 PLASMID pPNAP07; Circular SEQUENCE RS:NC_008763 LENGTH 9898 PLASMID pPNAP08; Circular SEQUENCE RS:NC_008764 LENGTH 6459 STATISTICS Number of nucleotides: 5366143 Number of protein genes: 4929 Number of RNA genes: 60 REFERENCE PMID:19453698 AUTHORS Yagi JM, et al. TITLE The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer. JOURNAL Environ Microbiol 11:2253-70 (2009) /// ENTRY T00460 Complete Genome NAME vei, V.eiseniae, VEREI, 391735 DEFINITION Verminephrobacter eiseniae EF01-2 ANNOTATION manual TAXONOMY TAX:391735 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008786 LENGTH 5566749 PLASMID pVEIS01; Circular SEQUENCE RS:NC_008771 LENGTH 31194 STATISTICS Number of nucleotides: 5597943 Number of protein genes: 4947 Number of RNA genes: 58 /// ENTRY T00461 Complete Genome NAME cjj, C.jejuni_81-176, CAMJJ, 354242 DEFINITION Campylobacter jejuni subsp. jejuni 81-176 ANNOTATION manual TAXONOMY TAX:354242 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR DISEASE Diarrhea, gastroenteritis, food poisoning CHROMOSOME Circular SEQUENCE RS:NC_008787 LENGTH 1616554 PLASMID pTet SEQUENCE RS:NC_008790 LENGTH 45025 PLASMID pVir; Circular SEQUENCE RS:NC_008770 LENGTH 37473 STATISTICS Number of nucleotides: 1699052 Number of protein genes: 1758 Number of RNA genes: 54 /// ENTRY T00462 Complete Genome NAME hha, H.halophila, HALHL, 349124 DEFINITION Halorhodospira halophila SL1 ANNOTATION manual TAXONOMY TAX:349124 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008789 LENGTH 2678452 STATISTICS Number of nucleotides: 2678452 Number of protein genes: 2407 Number of RNA genes: 54 /// ENTRY T00463 Complete Genome NAME mbb, M.bovis_BCG, MYCBP, 410289 DEFINITION Mycobacterium bovis BCG Pasteur 1173P2 ANNOTATION manual TAXONOMY TAX:410289 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex DATA_SOURCE RefSeq ORIGINAL_DB Pasteur DISEASE Tuberculosis COMMENT Live vaccine strain of tuberculosis CHROMOSOME Circular SEQUENCE RS:NC_008769 LENGTH 4374522 STATISTICS Number of nucleotides: 4374522 Number of protein genes: 3949 Number of RNA genes: 52 REFERENCE PMID:17372194 AUTHORS Brosch R, et al. TITLE Genome plasticity of BCG and impact on vaccine efficacy. JOURNAL Proc Natl Acad Sci U S A 104:5596-601 (2007) /// ENTRY T00464 Complete Genome NAME pmb, P.marinus_AS9601, PROMS, 146891 DEFINITION Prochlorococcus marinus AS9601 ANNOTATION manual TAXONOMY TAX:146891 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_008816 LENGTH 1669886 STATISTICS Number of nucleotides: 1669886 Number of protein genes: 1920 Number of RNA genes: 43 REFERENCE PMID:18159947 AUTHORS Kettler GC, et al. TITLE Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. JOURNAL PLoS Genet 3:e231 (2007) /// ENTRY T00465 Complete Genome NAME pmc, P.marinus_MIT9515, PROM5, 167542 DEFINITION Prochlorococcus marinus MIT 9515 ANNOTATION manual TAXONOMY TAX:167542 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_008817 LENGTH 1704176 STATISTICS Number of nucleotides: 1704176 Number of protein genes: 1905 Number of RNA genes: 42 REFERENCE PMID:18159947 AUTHORS Kettler GC, et al. TITLE Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. JOURNAL PLoS Genet 3:e231 (2007) /// ENTRY T00466 Complete Genome NAME pmf, P.marinus_MIT9303, PROM3, 59922 DEFINITION Prochlorococcus marinus MIT 9303 ANNOTATION manual TAXONOMY TAX:59922 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_008820 LENGTH 2682675 STATISTICS Number of nucleotides: 2682675 Number of protein genes: 2997 Number of RNA genes: 52 REFERENCE PMID:18159947 AUTHORS Kettler GC, et al. TITLE Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. JOURNAL PLoS Genet 3:e231 (2007) /// ENTRY T00467 Complete Genome NAME pme, P.marinus_NATL1A, PROM1, 167555 DEFINITION Prochlorococcus marinus NATL1A ANNOTATION manual TAXONOMY TAX:167555 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_008819 LENGTH 1864731 STATISTICS Number of nucleotides: 1864731 Number of protein genes: 2193 Number of RNA genes: 43 REFERENCE PMID:18159947 AUTHORS Kettler GC, et al. TITLE Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. JOURNAL PLoS Genet 3:e231 (2007) /// ENTRY T00468 Complete Genome NAME hbu, H.butylicus, HYPBU, 415426 DEFINITION Hyperthermus butylicus DSM 5456 ANNOTATION manual TAXONOMY TAX:415426 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Hyperthermus DATA_SOURCE RefSeq ORIGINAL_DB Copenhagen CHROMOSOME Circular SEQUENCE RS:NC_008818 LENGTH 1667163 STATISTICS Number of nucleotides: 1667163 Number of protein genes: 1602 Number of RNA genes: 52 REFERENCE PMID:17350933 AUTHORS Brugger K, et al. TITLE The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C. JOURNAL Archaea 2:127-35 (2007) /// ENTRY T00469 Complete Genome NAME yen, Y.enterocolitica, YERE8, 393305 DEFINITION Yersinia enterocolitica subsp. enterocolitica 8081 ANNOTATION manual TAXONOMY TAX:393305 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Yersinia infection, gastroenteritis CHROMOSOME Circular SEQUENCE RS:NC_008800 LENGTH 4615899 CHROMOSOME pYVe8081; Circular SEQUENCE RS:NC_008791 LENGTH 67721 STATISTICS Number of nucleotides: 4683620 Number of protein genes: 4050 Number of RNA genes: 144 REFERENCE PMID:17173484 AUTHORS Thomson NR, et al. TITLE The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. JOURNAL PLoS Genet 2:e206 (2006) /// ENTRY T00470 Complete Genome NAME mpt, M.petroleiphilum, METPP, 420662 DEFINITION Methylibium petroleiphilum PM1 ANNOTATION manual TAXONOMY TAX:420662 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008825 LENGTH 4044195 PLASMID RPME01; Circular SEQUENCE RS:NC_008826 LENGTH 599444 STATISTICS Number of nucleotides: 4643639 Number of protein genes: 4449 Number of RNA genes: 72 REFERENCE PMID:17158667 AUTHORS Kane SR, et al. TITLE Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1. JOURNAL J Bacteriol 189:1931-45 (2007) /// ENTRY T00471 Complete Genome NAME bml, B.mallei_NCTC10229, BURM9, 412022 DEFINITION Burkholderia mallei NCTC 10229 ANNOTATION manual TAXONOMY TAX:412022 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR JCVI-Pathema DISEASE Glanders, pneumonia CHROMOSOME I; Circular SEQUENCE RS:NC_008836 LENGTH 3458208 CHROMOSOME II; Circular SEQUENCE RS:NC_008835 LENGTH 2284095 STATISTICS Number of nucleotides: 5742303 Number of protein genes: 5509 Number of RNA genes: 67 REFERENCE PMID:15213162 AUTHORS Moore RA, et al. TITLE Contribution of gene loss to the pathogenic evolution of Burkholderia pseudomallei and Burkholderia mallei. JOURNAL Infect Immun 72:4172-87 (2004) /// ENTRY T00472 Complete Genome NAME mla, M.labreanum, METLZ, 410358 DEFINITION Methanocorpusculum labreanum Z ANNOTATION manual TAXONOMY TAX:410358 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae; Methanocorpusculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_008942 LENGTH 1804962 STATISTICS Number of nucleotides: 1804962 Number of protein genes: 1739 Number of RNA genes: 63 REFERENCE PMID:19495416 AUTHORS Anderson I, et al. TITLE Genomic characterization of methanomicrobiales reveals three classes of methanogens. JOURNAL PLoS One 4:e5797 (2009) /// ENTRY T00473 Complete Genome NAME ssa, S.sanguinis, STRSV, 388919 DEFINITION Streptococcus sanguinis SK36 ANNOTATION manual TAXONOMY TAX:388919 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB VCU DISEASE Caries, periodontal disease, endocarditis CHROMOSOME Circular SEQUENCE RS:NC_009009 LENGTH 2388435 STATISTICS Number of nucleotides: 2388435 Number of protein genes: 2270 Number of RNA genes: 74 REFERENCE PMID:17277061 AUTHORS Xu P, et al. TITLE Genome of the opportunistic pathogen Streptococcus sanguinis. JOURNAL J Bacteriol 189:3166-75 (2007) /// ENTRY T00474 Complete Genome NAME cth, C.thermocellum, CLOTH, 203119 DEFINITION Clostridium thermocellum ATCC 27405 ANNOTATION manual TAXONOMY TAX:203119 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB JGI JCVI-Pathema CHROMOSOME Circular SEQUENCE RS:NC_009012 LENGTH 3843301 STATISTICS Number of nucleotides: 3843301 Number of protein genes: 3189 Number of RNA genes: 71 /// ENTRY T00475 Complete Genome NAME llm, L.lactis_MG1363, LACLM, 416870 DEFINITION Lactococcus lactis subsp. cremoris MG1363 ANNOTATION manual TAXONOMY TAX:416870 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Lactococcus DATA_SOURCE RefSeq ORIGINAL_DB Norwich CHROMOSOME Circular SEQUENCE RS:NC_009004 LENGTH 2529478 STATISTICS Number of nucleotides: 2529478 Number of protein genes: 2434 Number of RNA genes: 81 REFERENCE PMID:17307855 AUTHORS Wegmann U, et al. TITLE Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. JOURNAL J Bacteriol 189:3256-70 (2007) /// ENTRY T00476 Complete Genome NAME apl, A.pleuropneumoniae, ACTP2, 416269 DEFINITION Actinobacillus pleuropneumoniae L20 (serotype 5b) ANNOTATION manual TAXONOMY TAX:416269 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus DATA_SOURCE RefSeq ORIGINAL_DB NRC Canada DISEASE Porcine pleuropneumonia CHROMOSOME Circular SEQUENCE RS:NC_009053 LENGTH 2274482 STATISTICS Number of nucleotides: 2274482 Number of protein genes: 2012 Number of RNA genes: 78 REFERENCE PMID:18065534 AUTHORS Foote SJ, et al. TITLE The complete genome sequence of Actinobacillus pleuropneumoniae L20 (serotype 5b). JOURNAL J Bacteriol 190:1495-6 (2008) /// ENTRY T00477 Complete Genome NAME mem, M.marisnigri, METMJ, 368407 DEFINITION Methanoculleus marisnigri JR1 ANNOTATION manual TAXONOMY TAX:368407 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009051 LENGTH 2478101 STATISTICS Number of nucleotides: 2478101 Number of protein genes: 2489 Number of RNA genes: 53 REFERENCE PMID:19495416 AUTHORS Anderson I, et al. TITLE Genomic characterization of methanomicrobiales reveals three classes of methanogens. JOURNAL PLoS One 4:e5797 (2009) /// ENTRY T00478 Complete Genome NAME sbl, S.baltica, SHEB5, 325240 DEFINITION Shewanella baltica OS155 ANNOTATION manual TAXONOMY TAX:325240 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009052 LENGTH 5127376 PLASMID pSbal01; Circular SEQUENCE RS:NC_009035 LENGTH 116763 PLASMID pSbal02; Circular SEQUENCE RS:NC_009036 LENGTH 74000 PLASMID pSbal03; Circular SEQUENCE RS:NC_009037 LENGTH 16762 PLASMID pSbal04; Circular SEQUENCE RS:NC_009038 LENGTH 7995 STATISTICS Number of nucleotides: 5342896 Number of protein genes: 4489 Number of RNA genes: 151 /// ENTRY T00479 Complete Genome NAME bmn, B.mallei_NCTC10247, BURM7, 320389 DEFINITION Burkholderia mallei NCTC 10247 ANNOTATION manual TAXONOMY TAX:320389 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR JCVI-Pathema DISEASE Glanders, pneumonia CHROMOSOME I; Circular SEQUENCE RS:NC_009080 LENGTH 3495687 CHROMOSOME II; Circular SEQUENCE RS:NC_009079 LENGTH 2352693 STATISTICS Number of nucleotides: 5848380 Number of protein genes: 5415 Number of RNA genes: 71 /// ENTRY T00480 Complete Genome NAME bpl, B.pseudomallei_1106a, BURP0, 357348 DEFINITION Burkholderia pseudomallei 1106a ANNOTATION manual TAXONOMY TAX:357348 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-Pathema DISEASE Melioidosis CHROMOSOME I; Circular SEQUENCE RS:NC_009076 LENGTH 3988455 CHROMOSOME II; Circular SEQUENCE RS:NC_009078 LENGTH 3100794 STATISTICS Number of nucleotides: 7089249 Number of protein genes: 7174 Number of RNA genes: 72 /// ENTRY T00481 Complete Genome NAME bpd, B.pseudomallei_668, BURP6, 320373 DEFINITION Burkholderia pseudomallei 668 ANNOTATION manual TAXONOMY TAX:320373 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR DISEASE Melioidosis CHROMOSOME I; Circular SEQUENCE RS:NC_009074 LENGTH 3912947 CHROMOSOME II; Circular SEQUENCE RS:NC_009075 LENGTH 3127456 STATISTICS Number of nucleotides: 7040403 Number of protein genes: 7116 Number of RNA genes: 71 /// ENTRY T00482 Complete Genome NAME mjl, Mycobacterium_JLS, MYCSJ, 164757 DEFINITION Mycobacterium sp. JLS ANNOTATION manual TAXONOMY TAX:164757 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009077 LENGTH 6048425 STATISTICS Number of nucleotides: 6048425 Number of protein genes: 5739 Number of RNA genes: 57 /// ENTRY T00483 Complete Genome NAME pcl, P.calidifontis, PYRCJ, 410359 DEFINITION Pyrobaculum calidifontis JCM 11548 ANNOTATION manual TAXONOMY TAX:410359 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009073 LENGTH 2009313 STATISTICS Number of nucleotides: 2009313 Number of protein genes: 2149 Number of RNA genes: 26 /// ENTRY T00484 Complete Genome NAME rsh, R.sphaeroides_ATCC17029, RHOS1, 349101 DEFINITION Rhodobacter sphaeroides ATCC 17029 ANNOTATION manual TAXONOMY TAX:349101 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_009049 LENGTH 3147721 CHROMOSOME 2; Circular SEQUENCE RS:NC_009050 LENGTH 1219053 PLASMID pRSPH01; Circular SEQUENCE RS:NC_009040 LENGTH 122606 STATISTICS Number of nucleotides: 4489380 Number of protein genes: 4131 Number of RNA genes: 70 /// ENTRY T00485 Complete Genome NAME smr, S.marinus, STAMF, 399550 DEFINITION Staphylothermus marinus F1 ANNOTATION manual TAXONOMY TAX:399550 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Staphylothermus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009033 LENGTH 1570485 STATISTICS Number of nucleotides: 1570485 Number of protein genes: 1570 Number of RNA genes: 45 REFERENCE PMID:19341479 AUTHORS Anderson IJ, et al. TITLE The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. JOURNAL BMC Genomics 10:145 (2009) /// ENTRY T00486 Complete Genome NAME acb, A.baumannii, ACIBT, 400667 DEFINITION Acinetobacter baumannii ATCC 17978 ANNOTATION manual TAXONOMY TAX:400667 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter DATA_SOURCE RefSeq ORIGINAL_DB Yale DISEASE Pneumonia, meningitis, septicemia, urinary tract infections CHROMOSOME Circular SEQUENCE RS:NC_009085 LENGTH 3976747 PLASMID pAB1; Circular SEQUENCE RS:NC_009083 LENGTH 13408 PLASMID pAB2; Circular SEQUENCE RS:NC_009084 LENGTH 11302 STATISTICS Number of nucleotides: 4001457 Number of protein genes: 3367 Number of RNA genes: 84 REFERENCE PMID:17344419 AUTHORS Smith MG, et al. TITLE New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis. JOURNAL Genes Dev 21:601-14 (2007) /// ENTRY T00487 Complete Genome NAME cdf, C.difficile, CLOD6, 272563 DEFINITION Clostridium difficile 630 ANNOTATION manual TAXONOMY TAX:272563 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Infectious diarrhea, pseudomembranous colitis CHROMOSOME Circular SEQUENCE RS:NC_009089 LENGTH 4290252 PLASMID pCD630; Circular SEQUENCE RS:NC_008226 LENGTH 7881 STATISTICS Number of nucleotides: 4298133 Number of protein genes: 3752 Number of RNA genes: 185 REFERENCE PMID:16804543 AUTHORS Sebaihia M, et al. TITLE The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. JOURNAL Nat Genet 38:779-86 (2006) /// ENTRY T00488 Complete Genome NAME pmg, P.marinus_MIT9301, PROM0, 167546 DEFINITION Prochlorococcus marinus MIT 9301 ANNOTATION manual TAXONOMY TAX:167546 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_009091 LENGTH 1641879 STATISTICS Number of nucleotides: 1641879 Number of protein genes: 1906 Number of RNA genes: 42 REFERENCE PMID:18159947 AUTHORS Kettler GC, et al. TITLE Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. JOURNAL PLoS Genet 3:e231 (2007) /// ENTRY T00489 Complete Genome NAME slo, S.loihica, SHELP, 323850 DEFINITION Shewanella loihica PV-4 ANNOTATION manual TAXONOMY TAX:323850 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009092 LENGTH 4602594 STATISTICS Number of nucleotides: 4602594 Number of protein genes: 3859 Number of RNA genes: 124 /// ENTRY T00490 Complete Genome NAME har, H.arsenicoxydans, HERAR, 204773 DEFINITION Herminiimonas arsenicoxydans ANNOTATION manual TAXONOMY TAX:204773 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_009138 LENGTH 3424307 STATISTICS Number of nucleotides: 3424307 Number of protein genes: 3295 Number of RNA genes: 58 REFERENCE PMID:17432936 AUTHORS Muller D, et al. TITLE A tale of two oxidation states: bacterial colonization of arsenic- rich environments. JOURNAL PLoS Genet 3:e53 (2007) /// ENTRY T00491 Complete Genome NAME mmq, M.maripaludis_C5, METM5, 402880 DEFINITION Methanococcus maripaludis C5 ANNOTATION manual TAXONOMY TAX:402880 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009135 LENGTH 1780761 PLASMID pMMC501; Circular SEQUENCE RS:NC_009136 LENGTH 8285 STATISTICS Number of nucleotides: 1789046 Number of protein genes: 1822 Number of RNA genes: 47 /// ENTRY T00492 Complete Genome NAME sen, S.erythraea, SACEN, 405948 DEFINITION Saccharopolyspora erythraea NRRL 2338 ANNOTATION manual TAXONOMY TAX:405948 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Pseudonocardiaceae; Saccharopolyspora DATA_SOURCE RefSeq ORIGINAL_DB Cambridge Kitasato CHROMOSOME Circular SEQUENCE RS:NC_009142 LENGTH 8212805 STATISTICS Number of nucleotides: 8212805 Number of protein genes: 7197 Number of RNA genes: 62 REFERENCE PMID:17369815 AUTHORS Oliynyk M, et al. TITLE Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338. JOURNAL Nat Biotechnol 25:447-53 (2007) /// ENTRY T00493 Complete Genome NAME bvi, B.vietnamiensis, BURVG, 269482 DEFINITION Burkholderia vietnamiensis G4 ANNOTATION manual TAXONOMY TAX:269482 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_009256 LENGTH 3652814 CHROMOSOME 2; Circular SEQUENCE RS:NC_009255 LENGTH 2411759 CHROMOSOME 3; Circular SEQUENCE RS:NC_009254 LENGTH 1241007 PLASMID pBVIE01; Circular SEQUENCE RS:NC_009230 LENGTH 397868 PLASMID pBVIE02; Circular SEQUENCE RS:NC_009227 LENGTH 265616 PLASMID pBVIE03; Circular SEQUENCE RS:NC_009229 LENGTH 226679 PLASMID pBVIE04; Circular SEQUENCE RS:NC_009228 LENGTH 107231 PLASMID pBVIE05; Circular SEQUENCE RS:NC_009226 LENGTH 88096 STATISTICS Number of nucleotides: 8391070 Number of protein genes: 7617 Number of RNA genes: 88 /// ENTRY T00494 Complete Genome NAME drm, D.reducens, DESRM, 349161 DEFINITION Desulfotomaculum reducens MI-1 ANNOTATION manual TAXONOMY TAX:349161 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009253 LENGTH 3608104 STATISTICS Number of nucleotides: 3608104 Number of protein genes: 3276 Number of RNA genes: 100 /// ENTRY T00495 Complete Genome NAME ftw, F.tularensis_WY96-3418, FRATW, 418136 DEFINITION Francisella tularensis subsp. tularensis WY96-3418 ANNOTATION manual TAXONOMY TAX:418136 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella DATA_SOURCE RefSeq ORIGINAL_DB Texas JGI DISEASE Tularemia CHROMOSOME Circular SEQUENCE RS:NC_009257 LENGTH 1898476 STATISTICS Number of nucleotides: 1898476 Number of protein genes: 1634 Number of RNA genes: 51 REFERENCE PMID:17895988 AUTHORS Beckstrom-Sternberg SM, et al. TITLE Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis. JOURNAL PLoS One 2:e947 (2007) /// ENTRY T00496 Complete Genome NAME gtn, G.thermodenitrificans, GEOTN, 420246 DEFINITION Geobacillus thermodenitrificans NG80-2 ANNOTATION manual TAXONOMY TAX:420246 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Geobacillus DATA_SOURCE RefSeq ORIGINAL_DB Nankai China CHROMOSOME Circular SEQUENCE RS:NC_009328 LENGTH 3550319 PLASMID pLW1071; Circular SEQUENCE RS:NC_009329 LENGTH 57693 STATISTICS Number of nucleotides: 3608012 Number of protein genes: 3445 Number of RNA genes: 117 REFERENCE PMID:17372208 AUTHORS Feng L, et al. TITLE Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. JOURNAL Proc Natl Acad Sci U S A 104:5602-7 (2007) /// ENTRY T00497 Complete Genome NAME spf, S.pyogenes_Manfredo, STRPG, 160491 DEFINITION Streptococcus pyogenes Manfredo (serotype M5) ANNOTATION manual TAXONOMY TAX:160491 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger GeneDB DISEASE Acute rheumatic fever CHROMOSOME Circular SEQUENCE RS:NC_009332 LENGTH 1841271 STATISTICS Number of nucleotides: 1841271 Number of protein genes: 1745 Number of RNA genes: 93 REFERENCE PMID:17012393 AUTHORS Holden MT, et al. TITLE Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain manfredo. JOURNAL J Bacteriol 189:1473-7 (2007) /// ENTRY T00498 Complete Genome NAME mgi, M.gilvum, MYCGI, 350054 DEFINITION Mycobacterium gilvum PYR-GCK (Mycobacterium flavescens PYR-GCK) ANNOTATION manual TAXONOMY TAX:350054 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009338 LENGTH 5619607 PLASMID pMFLV01 SEQUENCE RS:NC_009339 LENGTH 321253 PLASMID pMFLV02; Circular SEQUENCE RS:NC_009340 LENGTH 25309 PLASMID pMFLV03; Circular SEQUENCE RS:NC_009341 LENGTH 16660 STATISTICS Number of nucleotides: 5982829 Number of protein genes: 5579 Number of RNA genes: 56 /// ENTRY T00499 Complete Genome NAME pvi, P.vibrioformis, PROVI, 290318 DEFINITION Prosthecochloris vibrioformis DSM 265 ANNOTATION manual TAXONOMY TAX:290318 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009337 LENGTH 1966858 STATISTICS Number of nucleotides: 1966858 Number of protein genes: 1753 Number of RNA genes: 51 /// ENTRY T00500 Complete Genome NAME asa, A.salmonicida, AERS4, 382245 DEFINITION Aeromonas salmonicida subsp. salmonicida A449 ANNOTATION manual TAXONOMY TAX:382245 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas DATA_SOURCE RefSeq ORIGINAL_DB NRC Canada DISEASE Furunculosis CHROMOSOME Circular SEQUENCE RS:NC_009348 LENGTH 4702402 PLASMID pAsa1; Circular SEQUENCE RS:NC_004923 LENGTH 5424 PLASMID pAsa2; Circular SEQUENCE RS:NC_004925 LENGTH 5247 PLASMID pAsa3; Circular SEQUENCE RS:NC_004924 LENGTH 5616 PLASMID pAsa4; Circular SEQUENCE RS:NC_009349 LENGTH 166749 PLASMID pAsa5; Circular SEQUENCE RS:NC_009350 LENGTH 155098 STATISTICS Number of nucleotides: 5040536 Number of protein genes: 4436 Number of RNA genes: 151 /// ENTRY T00501 Complete Genome NAME cgt, C.glutamicum_R, CORGB, 340322 DEFINITION Corynebacterium glutamicum R ANNOTATION manual TAXONOMY TAX:340322 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium DATA_SOURCE RefSeq ORIGINAL_DB RITE Japan CHROMOSOME Circular SEQUENCE RS:NC_009342 LENGTH 3314179 PLASMID pCGR1; Circular SEQUENCE RS:NC_009343 LENGTH 49120 STATISTICS Number of nucleotides: 3363299 Number of protein genes: 3080 Number of RNA genes: 76 REFERENCE PMID:17379713 AUTHORS Yukawa H, et al. TITLE Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R. JOURNAL Microbiology 153:1042-58 (2007) /// ENTRY T00502 Complete Genome NAME pnu, Polynucleobacter, POLSQ, 312153 DEFINITION Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 ANNOTATION manual TAXONOMY TAX:312153 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009379 LENGTH 2159490 STATISTICS Number of nucleotides: 2159490 Number of protein genes: 2077 Number of RNA genes: 43 /// ENTRY T00503 Complete Genome NAME pas, P.arsenaticum, PYRAR, 340102 DEFINITION Pyrobaculum arsenaticum DSM 13514 ANNOTATION manual TAXONOMY TAX:340102 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009376 LENGTH 2121076 STATISTICS Number of nucleotides: 2121076 Number of protein genes: 2299 Number of RNA genes: 45 /// ENTRY T00504 Complete Genome NAME stp, S.tropica, SALTO, 369723 DEFINITION Salinispora tropica CNB-440 ANNOTATION manual TAXONOMY TAX:369723 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micromonosporineae; Micromonosporaceae; Salinispora DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009380 LENGTH 5183331 STATISTICS Number of nucleotides: 5183331 Number of protein genes: 4536 Number of RNA genes: 60 REFERENCE PMID:17563368 AUTHORS Udwary DW, et al. TITLE Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica. JOURNAL Proc Natl Acad Sci U S A 104:10376-81 (2007) /// ENTRY T00505 Complete Genome NAME ypp, Y.pestis_Pestoides, YERPP, 386656 DEFINITION Yersinia pestis Pestoides F (biovar Microtus) ANNOTATION manual TAXONOMY TAX:386656 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Plague (Rodent) COMMENT One such group of atypical Y. pestis, called pestoides, causes disease in a variety of rodents in Central Asia. CHROMOSOME Circular SEQUENCE RS:NC_009381 LENGTH 4517345 PLASMID MT; Circular SEQUENCE RS:NC_009378 LENGTH 137010 PLASMID CD; Circular SEQUENCE RS:NC_009377 LENGTH 71507 STATISTICS Number of nucleotides: 4725862 Number of protein genes: 4068 Number of RNA genes: 106 /// ENTRY T00506 Complete Genome NAME csc, C.saccharolyticus, CALS8, 351627 DEFINITION Caldicellulosiruptor saccharolyticus DSM 8903 ANNOTATION manual TAXONOMY TAX:351627 LINEAGE Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009437 LENGTH 2970275 STATISTICS Number of nucleotides: 2970275 Number of protein genes: 2679 Number of RNA genes: 57 REFERENCE PMID:18776029 AUTHORS van de Werken HJ, et al. TITLE Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus. JOURNAL Appl Environ Microbiol 74:6720-9 (2008) /// ENTRY T00507 Complete Genome NAME ent, Enterobacter_638, ENT38, 399742 DEFINITION Enterobacter sp. 638 ANNOTATION manual TAXONOMY TAX:399742 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009436 LENGTH 4518712 PLASMID pENTE01; Circular SEQUENCE RS:NC_009425 LENGTH 157749 STATISTICS Number of nucleotides: 4676461 Number of protein genes: 4240 Number of RNA genes: 108 /// ENTRY T00508 Complete Genome NAME fjo, F.johnsoniae, FLAJ1, 376686 DEFINITION Flavobacterium johnsoniae UW101 ANNOTATION manual TAXONOMY TAX:376686 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Flavobacteriaceae; Flavobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009441 LENGTH 6096872 STATISTICS Number of nucleotides: 6096872 Number of protein genes: 5017 Number of RNA genes: 83 /// ENTRY T00509 Complete Genome NAME mse, M.sedula, METS5, 399549 DEFINITION Metallosphaera sedula DSM 5348 ANNOTATION manual TAXONOMY TAX:399549 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Metallosphaera DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009440 LENGTH 2191517 STATISTICS Number of nucleotides: 2191517 Number of protein genes: 2256 Number of RNA genes: 47 REFERENCE PMID:18083856 AUTHORS Auernik KS, et al. TITLE The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism. JOURNAL Appl Environ Microbiol 74:682-92 (2008) /// ENTRY T00510 Complete Genome NAME pmy, P.mendocina, PSEMY, 399739 DEFINITION Pseudomonas mendocina ymp ANNOTATION manual TAXONOMY TAX:399739 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI COMMENT Pseudomonas mendocina, a Gram-negative non- fermentative rod, occurs in water and soil but is rarely recovered as a human pathogen. CHROMOSOME Circular SEQUENCE RS:NC_009439 LENGTH 5072807 STATISTICS Number of nucleotides: 5072807 Number of protein genes: 4594 Number of RNA genes: 81 /// ENTRY T00511 Complete Genome NAME psa, P.stutzeri, PSEU5, 379731 DEFINITION Pseudomonas stutzeri A1501 ANNOTATION manual TAXONOMY TAX:379731 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB Beijing CHROMOSOME Circular SEQUENCE RS:NC_009434 LENGTH 4567418 STATISTICS Number of nucleotides: 4567418 Number of protein genes: 4128 Number of RNA genes: 73 REFERENCE PMID:18495935 AUTHORS Yan Y, et al. TITLE Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. JOURNAL Proc Natl Acad Sci U S A 105:7564-9 (2008) /// ENTRY T00512 Complete Genome NAME rsq, R.sphaeroides_ATCC17025, RHOS5, 349102 DEFINITION Rhodobacter sphaeroides ATCC 17025 ANNOTATION manual TAXONOMY TAX:349102 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009428 LENGTH 3217726 PLASMID pRSPA01; Circular SEQUENCE RS:NC_009429 LENGTH 877879 PLASMID pRSPA02; Circular SEQUENCE RS:NC_009430 LENGTH 289489 PLASMID pRSPA03; Circular SEQUENCE RS:NC_009431 LENGTH 121962 PLASMID pRSPA04; Circular SEQUENCE RS:NC_009432 LENGTH 36198 PLASMID pRSPA05; Circular SEQUENCE RS:NC_009433 LENGTH 13873 STATISTICS Number of nucleotides: 4557127 Number of protein genes: 4333 Number of RNA genes: 68 /// ENTRY T00513 Complete Genome NAME spc, S.putrefaciens, SHEPC, 319224 DEFINITION Shewanella putrefaciens CN-32 ANNOTATION manual TAXONOMY TAX:319224 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009438 LENGTH 4659220 STATISTICS Number of nucleotides: 4659220 Number of protein genes: 3972 Number of RNA genes: 129 /// ENTRY T00514 Complete Genome NAME ssu, S.suis_05ZYH33, STRSY, 391295 DEFINITION Streptococcus suis 05ZYH33 ANNOTATION manual TAXONOMY TAX:391295 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Beijing DISEASE Meningitis, septicemia, arthritis CHROMOSOME Circular SEQUENCE RS:NC_009442 LENGTH 2096309 STATISTICS Number of nucleotides: 2096309 Number of protein genes: 2186 Number of RNA genes: 68 REFERENCE PMID:17375201 AUTHORS Chen C, et al. TITLE A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates. JOURNAL PLoS One 2:e315 (2007) /// ENTRY T00515 Complete Genome NAME ssv, S.suis_98HAH33, STRS2, 391296 DEFINITION Streptococcus suis 98HAH33 ANNOTATION manual TAXONOMY TAX:391296 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Beijing DISEASE Meningitis, septicemia, arthritis CHROMOSOME Circular SEQUENCE RS:NC_009443 LENGTH 2095698 STATISTICS Number of nucleotides: 2095698 Number of protein genes: 2185 Number of RNA genes: 68 REFERENCE PMID:17375201 AUTHORS Chen C, et al. TITLE A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates. JOURNAL PLoS One 2:e315 (2007) /// ENTRY T00516 Complete Genome NAME bra, Bradyrhizobium_ORS278, BRASO, 114615 DEFINITION Bradyrhizobium sp. ORS278 ANNOTATION manual TAXONOMY TAX:114615 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium DATA_SOURCE RefSeq ORIGINAL_DB Genoscope RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_009445 LENGTH 7456587 STATISTICS Number of nucleotides: 7456587 Number of protein genes: 6717 Number of RNA genes: 66 REFERENCE PMID:17540897 AUTHORS Giraud E, et al. TITLE Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia. JOURNAL Science 316:1307-12 (2007) /// ENTRY T00517 Complete Genome NAME dno, D.nodosus, DICNV, 246195 DEFINITION Dichelobacter nodosus VCS1703A ANNOTATION manual TAXONOMY TAX:246195 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Dichelobacter DATA_SOURCE RefSeq ORIGINAL_DB TIGR DISEASE Ovine footrot CHROMOSOME Circular SEQUENCE RS:NC_009446 LENGTH 1389350 STATISTICS Number of nucleotides: 1389350 Number of protein genes: 1280 Number of RNA genes: 55 REFERENCE PMID:17468768 AUTHORS Myers GS, et al. TITLE Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus. JOURNAL Nat Biotechnol 25:569-75 (2007) /// ENTRY T00518 Complete Genome NAME deb, Dehalococcoides_BAV1, DEHSB, 216389 DEFINITION Dehalococcoides sp. BAV1 ANNOTATION manual TAXONOMY TAX:216389 LINEAGE Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009455 LENGTH 1341892 STATISTICS Number of nucleotides: 1341892 Number of protein genes: 1371 Number of RNA genes: 50 /// ENTRY T00519 Complete Genome NAME pth, P.thermopropionicum, PELTS, 370438 DEFINITION Pelotomaculum thermopropionicum SI ANNOTATION manual TAXONOMY TAX:370438 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum DATA_SOURCE RefSeq ORIGINAL_DB MBI Japan CHROMOSOME Circular SEQUENCE RS:NC_009454 LENGTH 3025375 STATISTICS Number of nucleotides: 3025375 Number of protein genes: 2918 Number of RNA genes: 57 REFERENCE PMID:18218977 AUTHORS Kosaka T, et al. TITLE The genome of Pelotomaculum thermopropionicum reveals niche- associated evolution in anaerobic microbiota. JOURNAL Genome Res 18:442-8 (2008) REFERENCE PMID:16352836 AUTHORS Kosaka T, et al. TITLE Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum. JOURNAL J Bacteriol 188:202-10 (2006) /// ENTRY T00520 Complete Genome NAME vco, V.cholerae_O395, VIBC3, 345073 DEFINITION Vibrio cholerae O395 ANNOTATION manual TAXONOMY TAX:345073 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR DISEASE Cholera CHROMOSOME 1; Circular SEQUENCE RS:NC_009456 LENGTH 1108250 CHROMOSOME 2; Circular SEQUENCE RS:NC_009457 LENGTH 3024069 STATISTICS Number of nucleotides: 4132319 Number of protein genes: 3875 Number of RNA genes: 122 REFERENCE PMID:19115014 AUTHORS Feng L, et al. TITLE A recalibrated molecular clock and independent origins for the cholera pandemic clones. JOURNAL PLoS One 3:e4053 (2008) /// ENTRY T00521 Complete Genome NAME gur, G.uraniumreducens, GEOUR, 351605 DEFINITION Geobacter uraniumreducens Rf4 ANNOTATION manual TAXONOMY TAX:351605 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009483 LENGTH 5136364 STATISTICS Number of nucleotides: 5136364 Number of protein genes: 4357 Number of RNA genes: 57 /// ENTRY T00522 Complete Genome NAME saj, S.aureus_JH9, STAA9, 359786 DEFINITION Staphylococcus aureus subsp. aureus JH9, meticillin-resistant, vancomycin-resistant ANNOTATION manual TAXONOMY TAX:359786 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Toxic-shock syndrome and staphylococcal scarlet fever CHROMOSOME Circular SEQUENCE RS:NC_009487 LENGTH 2906700 PLASMID pSJH901; Circular SEQUENCE RS:NC_009477 LENGTH 30429 STATISTICS Number of nucleotides: 2937129 Number of protein genes: 2726 Number of RNA genes: 81 /// ENTRY T00523 Complete Genome NAME syr, Synechococcus_RCC307, SYNR3, 316278 DEFINITION Synechococcus sp. RCC307 ANNOTATION manual TAXONOMY TAX:316278 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_009482 LENGTH 2224914 STATISTICS Number of nucleotides: 2224914 Number of protein genes: 2534 Number of RNA genes: 48 /// ENTRY T00524 Complete Genome NAME syx, Synechococcus_WH7803, SYNPW, 32051 DEFINITION Synechococcus sp. WH 7803 ANNOTATION manual TAXONOMY TAX:32051 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_009481 LENGTH 2366980 STATISTICS Number of nucleotides: 2366980 Number of protein genes: 2533 Number of RNA genes: 53 /// ENTRY T00525 Complete Genome NAME tpt, T.petrophila, THEP1, 390874 DEFINITION Thermotoga petrophila RKU-1 ANNOTATION manual TAXONOMY TAX:390874 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RC:NC_009486 LENGTH 1823511 STATISTICS Number of nucleotides: 1823511 Number of protein genes: 1785 Number of RNA genes: 52 /// ENTRY T00526 Complete Genome NAME rci, RC-I_MRE50, UNCMA, 351160 DEFINITION Uncultured methanogenic archaeon RC-I (Rice Cluster I), reconstructed from MRE50 metagenome ANNOTATION manual TAXONOMY TAX:351160 LINEAGE Archaea; Euryarchaeota; environmental samples DATA_SOURCE RefSeq ORIGINAL_DB Max Planck CHROMOSOME Circular SEQUENCE RS:NC_009464 LENGTH 3179916 STATISTICS Number of nucleotides: 3179916 Number of protein genes: 3085 Number of RNA genes: 63 REFERENCE PMID:16857943 AUTHORS Erkel C, et al. TITLE Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere. JOURNAL Science 313:370-2 (2006) /// ENTRY T00527 Complete Genome NAME acr, A.cryptum, ACICJ, 349163 DEFINITION Acidiphilium cryptum JF-5 ANNOTATION manual TAXONOMY TAX:349163 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009484 LENGTH 3389227 PLASMID pACRY01; Circular SEQUENCE RS:NC_009467 LENGTH 203589 PLASMID pACRY02; Circular SEQUENCE RS:NC_009468 LENGTH 187422 PLASMID pACRY03; Circular SEQUENCE RS:NC_009469 LENGTH 88953 PLASMID pACRY04; Circular SEQUENCE RS:NC_009470 LENGTH 37415 PLASMID pACRY05; Circular SEQUENCE RS:NC_009471 LENGTH 37155 PLASMID pACRY06; Circular SEQUENCE RS:NC_009472 LENGTH 8781 PLASMID pACRY07; Circular SEQUENCE RS:NC_009473 LENGTH 5629 PLASMID pACRY08; Circular SEQUENCE RS:NC_009474 LENGTH 4909 STATISTICS Number of nucleotides: 3963080 Number of protein genes: 3559 Number of RNA genes: 55 /// ENTRY T00528 Complete Genome NAME bbt, Bradyrhizobium_BTAi1, BRASB, 288000 DEFINITION Bradyrhizobium sp. BTAi1 ANNOTATION manual TAXONOMY TAX:288000 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium DATA_SOURCE RefSeq ORIGINAL_DB JGI RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_009485 LENGTH 8264687 PLASMID pBBta01; Circular SEQUENCE RS:NC_009475 LENGTH 228826 STATISTICS Number of nucleotides: 8493513 Number of protein genes: 7621 Number of RNA genes: 70 REFERENCE PMID:17540897 AUTHORS Giraud E, et al. TITLE Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia. JOURNAL Science 316:1307-12 (2007) /// ENTRY T00529 Complete Genome NAME cmi, C.michiganensis, CLAM3, 443906 DEFINITION Clavibacter michiganensis subsp. michiganensis NCPPB 382 ANNOTATION manual TAXONOMY TAX:443906 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Microbacteriaceae; Clavibacter DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld U CHROMOSOME Circular SEQUENCE RS:NC_009480 LENGTH 3297891 PLASMID pCM1; Circular SEQUENCE RS:NC_009478 LENGTH 27357 PLASMID pCM2; Circular SEQUENCE RS:NC_009479 LENGTH 69989 STATISTICS Number of nucleotides: 3395237 Number of protein genes: 3078 Number of RNA genes: 60 REFERENCE PMID:18192381 AUTHORS Gartemann KH, et al. TITLE The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL J Bacteriol 190:2138-49 (2008) /// ENTRY T00530 Complete Genome NAME vok, V.okutanii, VESOH, 412965 DEFINITION Candidatus Vesicomyosocius okutanii HA, endosymbiont of Calyptogena okutanii (deep-sea clam) ANNOTATION manual TAXONOMY TAX:412965 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts DATA_SOURCE RefSeq ORIGINAL_DB JAMSTEC CHROMOSOME Circular SEQUENCE RS:NC_009465 LENGTH 1022154 STATISTICS Number of nucleotides: 1022154 Number of protein genes: 937 Number of RNA genes: 38 REFERENCE PMID:17493812 AUTHORS Kuwahara H, et al. TITLE Reduced Genome of the Thioautotrophic Intracellular Symbiont in a Deep-Sea Clam, Calyptogena okutanii. JOURNAL Curr Biol 17:881-886 (2007) /// ENTRY T00531 Complete Genome NAME ots, O.tsutsugamushi, ORITB, 357244 DEFINITION Orientia tsutsugamushi Boryong ANNOTATION manual TAXONOMY TAX:357244 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Orientia DATA_SOURCE RefSeq ORIGINAL_DB U Seoul DISEASE Scrub typhus CHROMOSOME SEQUENCE RS:NC_009488 LENGTH 2127051 STATISTICS Number of nucleotides: 2127051 Number of protein genes: 1182 Number of RNA genes: 37 REFERENCE PMID:17483455 AUTHORS Cho NH, et al. TITLE The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes. JOURNAL Proc Natl Acad Sci U S A 104:7981-6 (2007) /// ENTRY T00532 Complete Genome NAME lpc, L.pneumophila_Corby, LEGPC, 400673 DEFINITION Legionella pneumophila Corby ANNOTATION manual TAXONOMY TAX:400673 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella DATA_SOURCE RefSeq ORIGINAL_DB FLI DISEASE Pneumonia CHROMOSOME Circular SEQUENCE RS:NC_009494 LENGTH 3576470 STATISTICS Number of nucleotides: 3576470 Number of protein genes: 3204 Number of RNA genes: 53 REFERENCE PMID:17888731 AUTHORS Glockner G, et al. TITLE Identification and characterization of a new conjugation/type IVA secretion system (trb/tra) of Legionella pneumophila Corby localized on two mobile genomic islands. JOURNAL Int J Med Microbiol 298:411-28 (2008) /// ENTRY T00533 Complete Genome NAME cbo, C.botulinum, CLOBO, 413999 DEFINITION Clostridium botulinum A ATCC 3502 ANNOTATION manual TAXONOMY TAX:413999 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Sanger JCVI-Pathema DISEASE Foodborne botulism CHROMOSOME Circular SEQUENCE RS:NC_009495 LENGTH 3886916 PLASMID pBOT3502; Circular SEQUENCE RS:NC_009496 LENGTH 16344 STATISTICS Number of nucleotides: 3903260 Number of protein genes: 3590 Number of RNA genes: 114 REFERENCE PMID:17519437 AUTHORS Sebaihia M, et al. TITLE Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes. JOURNAL Genome Res 17:1082-92 (2007) /// ENTRY T00534 Complete Genome NAME bov, B.ovis, BRUO2, 444178 DEFINITION Brucella ovis ATCC 25840 ANNOTATION manual TAXONOMY TAX:444178 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB TIGR DISEASE Ovine epididymitis and testicular atrophy CHROMOSOME I; Circular SEQUENCE RS:NC_009505 LENGTH 2111370 CHROMOSOME II; Circular SEQUENCE RS:NC_009504 LENGTH 1164220 STATISTICS Number of nucleotides: 3275590 Number of protein genes: 2890 Number of RNA genes: 64 /// ENTRY T00535 Complete Genome NAME lre, L.reuteri, LACRF, 557436 DEFINITION Lactobacillus reuteri DSM 20016 ANNOTATION manual TAXONOMY TAX:557436 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009513 LENGTH 1999618 STATISTICS Number of nucleotides: 1999618 Number of protein genes: 1900 Number of RNA genes: 87 /// ENTRY T00536 Complete Genome NAME maa, M.agalactiae, MYCAP, 347257 DEFINITION Mycoplasma agalactiae PG2 ANNOTATION manual TAXONOMY TAX:347257 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB Genoscope DISEASE Contagious agalactia of sheep and goats CHROMOSOME Circular SEQUENCE RS:NC_009497 LENGTH 877438 STATISTICS Number of nucleotides: 877438 Number of protein genes: 742 Number of RNA genes: 41 REFERENCE PMID:17511520 AUTHORS Sirand-Pugnet P, et al. TITLE Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome. JOURNAL PLoS Genet 3:e75 (2007) /// ENTRY T00537 Complete Genome NAME ppf, P.putida_F1, PSEP1, 351746 DEFINITION Pseudomonas putida F1 ANNOTATION manual TAXONOMY TAX:351746 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009512 LENGTH 5959964 STATISTICS Number of nucleotides: 5959964 Number of protein genes: 5250 Number of RNA genes: 98 /// ENTRY T00538 Complete Genome NAME swi, S.wittichii, SPHWW, 392499 DEFINITION Sphingomonas wittichii RW1 ANNOTATION manual TAXONOMY TAX:392499 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009511 LENGTH 5382261 PLASMID pSWIT01; Circular SEQUENCE RS:NC_009507 LENGTH 310228 PLASMID pSWIT02; Circular SEQUENCE RS:NC_009508 LENGTH 222757 STATISTICS Number of nucleotides: 5915246 Number of protein genes: 5345 Number of RNA genes: 56 /// ENTRY T00539 Complete Genome NAME msi, M.smithii, METS3, 420247 DEFINITION Methanobrevibacter smithii ATCC 35061 ANNOTATION manual TAXONOMY TAX:420247 LINEAGE Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter DATA_SOURCE RefSeq ORIGINAL_DB Washington U CHROMOSOME Circular SEQUENCE RS:NC_009515 LENGTH 1853160 STATISTICS Number of nucleotides: 1853160 Number of protein genes: 1793 Number of RNA genes: 42 REFERENCE PMID:17563350 AUTHORS Samuel BS, et al. TITLE Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut. JOURNAL Proc Natl Acad Sci U S A 104:10643-8 (2007) /// ENTRY T00540 Complete Genome NAME mra, M.tuberculosis_H37Ra, MYCTA, 419947 DEFINITION Mycobacterium tuberculosis H37Ra ANNOTATION manual TAXONOMY TAX:419947 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex DATA_SOURCE RefSeq ORIGINAL_DB CHGC Shanghai DISEASE Tuberculosis CHROMOSOME Circular SEQUENCE RS:NC_009525 LENGTH 4419977 STATISTICS Number of nucleotides: 4419977 Number of protein genes: 4034 Number of RNA genes: 50 REFERENCE PMID:18584054 AUTHORS Zheng H, et al. TITLE Genetic basis of virulence attenuation revealed by comparative genomic analysis of Mycobacterium tuberculosis strain H37Ra versus H37Rv. JOURNAL PLoS One 3:e2375 (2008) /// ENTRY T00541 Complete Genome NAME prw, Psychrobacter_PRwf-1, PSYWF, 349106 DEFINITION Psychrobacter sp. PRwf-1 ANNOTATION manual TAXONOMY TAX:349106 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009524 LENGTH 2978976 PLASMID pRWF101; Circular SEQUENCE RS:NC_009516 LENGTH 13956 PLASMID pRWF102; Circular SEQUENCE RS:NC_009517 LENGTH 2117 STATISTICS Number of nucleotides: 2995049 Number of protein genes: 2385 Number of RNA genes: 74 /// ENTRY T00542 Complete Genome NAME rrs, Roseiflexus_RS-1, ROSS1, 357808 DEFINITION Roseiflexus sp. RS-1 ANNOTATION manual TAXONOMY TAX:357808 LINEAGE Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae; Roseiflexus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009523 LENGTH 5801598 STATISTICS Number of nucleotides: 5801598 Number of protein genes: 4517 Number of RNA genes: 57 /// ENTRY T00543 Complete Genome NAME hip, H.influenzae_PittEE, HAEIE, 374930 DEFINITION Haemophilus influenzae PittEE ANNOTATION manual TAXONOMY TAX:374930 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus DATA_SOURCE RefSeq ORIGINAL_DB ASRI DISEASE Meningitis, septicemia, otitis media, sinusitis and chronic bronchitis CHROMOSOME Circular SEQUENCE RS:NC_009566 LENGTH 1813033 STATISTICS Number of nucleotides: 1813033 Number of protein genes: 1613 Number of RNA genes: 94 REFERENCE PMID:17550610 AUTHORS Hogg JS, et al. TITLE Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains. JOURNAL Genome Biol 8:R103 (2007) /// ENTRY T00544 Complete Genome NAME hiq, H.influenzae_PittGG, HAEIG, 374931 DEFINITION Haemophilus influenzae PittGG ANNOTATION KOALA TAXONOMY TAX:374931 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus DATA_SOURCE RefSeq ORIGINAL_DB ASRI DISEASE Meningitis, septicemia, otitis media, sinusitis and chronic bronchitis CHROMOSOME Circular SEQUENCE RS:NC_009567 LENGTH 1887192 STATISTICS Number of nucleotides: 1887192 Number of protein genes: 1661 Number of RNA genes: 86 REFERENCE PMID:17550610 AUTHORS Hogg JS, et al. TITLE Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains. JOURNAL Genome Biol 8:R103 (2007) /// ENTRY T00545 Complete Genome NAME mtf, M.tuberculosis_F11, MYCTF, 336982 DEFINITION Mycobacterium tuberculosis F11 ANNOTATION KOALA TAXONOMY TAX:336982 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex DATA_SOURCE RefSeq ORIGINAL_DB Broad DISEASE Tuberculosis CHROMOSOME Circular SEQUENCE RS:NC_009565 LENGTH 4424435 STATISTICS Number of nucleotides: 4424435 Number of protein genes: 3941 Number of RNA genes: 48 /// ENTRY T00546 Complete Genome NAME bvu, B.vulgatus, BACV8, 435590 DEFINITION Bacteroides vulgatus ATCC 8482 ANNOTATION KOALA TAXONOMY TAX:435590 LINEAGE Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides DATA_SOURCE RefSeq ORIGINAL_DB Washington U DISEASE Opportunistic peritoneal diseases CHROMOSOME Circular SEQUENCE RS:NC_009614 LENGTH 5163189 STATISTICS Number of nucleotides: 5163189 Number of protein genes: 4065 Number of RNA genes: 106 REFERENCE PMID:17579514 AUTHORS Xu J, et al. TITLE Evolution of symbiotic bacteria in the distal human intestine. JOURNAL PLoS Biol 5:e156 (2007) /// ENTRY T00547 Complete Genome NAME cbe, C.beijerinckii, CLOB8, 290402 DEFINITION Clostridium beijerinckii NCIMB 8052 ANNOTATION KOALA TAXONOMY TAX:290402 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009617 LENGTH 6000632 STATISTICS Number of nucleotides: 6000632 Number of protein genes: 5020 Number of RNA genes: 140 /// ENTRY T00548 Complete Genome NAME fps, F.psychrophilum, FLAPJ, 402612 DEFINITION Flavobacterium psychrophilum JIP02/86 ANNOTATION KOALA TAXONOMY TAX:402612 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Flavobacteriaceae; Flavobacterium DATA_SOURCE RefSeq ORIGINAL_DB INRA DISEASE Cold water disease (CWD), Rainbow trout fry syndrome (RTFS) CHROMOSOME Circular SEQUENCE RS:NC_009613 LENGTH 2861988 STATISTICS Number of nucleotides: 2861988 Number of protein genes: 2412 Number of RNA genes: 67 REFERENCE PMID:17592475 AUTHORS Duchaud E, et al. TITLE Complete genome sequence of the fish pathogen Flavobacterium psychrophilum. JOURNAL Nat Biotechnol 25:763-9 (2007) /// ENTRY T00549 Complete Genome NAME pdi, P.distasonis, PARD8, 435591 DEFINITION Parabacteroides distasonis ATCC 8503 ANNOTATION KOALA TAXONOMY TAX:435591 LINEAGE Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides DATA_SOURCE RefSeq ORIGINAL_DB Washington U DISEASE Opportunistic peritoneal diseases CHROMOSOME Circular SEQUENCE RS:NC_009615 LENGTH 4811379 STATISTICS Number of nucleotides: 4811379 Number of protein genes: 3850 Number of RNA genes: 104 REFERENCE PMID:17579514 AUTHORS Xu J, et al. TITLE Evolution of symbiotic bacteria in the distal human intestine. JOURNAL PLoS Biol 5:e156 (2007) /// ENTRY T00550 Complete Genome NAME tme, T.melanesiensis, THEM4, 391009 DEFINITION Thermosipho melanesiensis BI429 ANNOTATION manual TAXONOMY TAX:391009 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermosipho DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009616 LENGTH 1915238 STATISTICS Number of nucleotides: 1915238 Number of protein genes: 1879 Number of RNA genes: 65 /// ENTRY T00551 Complete Genome NAME amt, A.metalliredigens, ALKMQ, 293826 DEFINITION Alkaliphilus metalliredigens QYMF ANNOTATION manual TAXONOMY TAX:293826 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009633 LENGTH 4929566 STATISTICS Number of nucleotides: 4929566 Number of protein genes: 4625 Number of RNA genes: 139 /// ENTRY T00552 Complete Genome NAME mae, M.aeolicus, META3, 419665 DEFINITION Methanococcus aeolicus Nankai-3 ANNOTATION KOALA TAXONOMY TAX:419665 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009635 LENGTH 1569500 STATISTICS Number of nucleotides: 1569500 Number of protein genes: 1490 Number of RNA genes: 46 /// ENTRY T00553 Complete Genome NAME mmz, M.maripaludis_C7, METM7, 426368 DEFINITION Methanococcus maripaludis C7 ANNOTATION KOALA TAXONOMY TAX:426368 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009637 LENGTH 1772694 STATISTICS Number of nucleotides: 1772694 Number of protein genes: 1788 Number of RNA genes: 47 /// ENTRY T00554 Complete Genome NAME mvn, M.vannielii, METVS, 406327 DEFINITION Methanococcus vannielii SB ANNOTATION KOALA TAXONOMY TAX:406327 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009634 LENGTH 1720048 STATISTICS Number of nucleotides: 1720048 Number of protein genes: 1678 Number of RNA genes: 51 /// ENTRY T00555 Complete Genome NAME smd, S.medicae, SINMW, 366394 DEFINITION Sinorhizobium medicae WSM419 ANNOTATION KOALA TAXONOMY TAX:366394 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009636 LENGTH 3781904 PLASMID pSMED01; Circular SEQUENCE RS:NC_009620 LENGTH 1570951 PLASMID pSMED02; Circular SEQUENCE RS:NC_009621 LENGTH 1245408 PLASMID pSMED03; Circular SEQUENCE RS:NC_009622 LENGTH 219313 STATISTICS Number of nucleotides: 6817576 Number of protein genes: 6213 Number of RNA genes: 63 /// ENTRY T00556 Complete Genome NAME sah, S.aureus_JH1, STAA2, 359787 DEFINITION Staphylococcus aureus subsp. aureus JH1, meticillin-resistant, vancomycin-susceptible ANNOTATION manual TAXONOMY TAX:359787 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Toxic-shock syndrome, staphylococcal scarlet fever, necrotizing pneumonia CHROMOSOME Circular SEQUENCE RS:NC_009632 LENGTH 2906507 PLASMID pSJH101; Circular SEQUENCE RS:NC_009619 LENGTH 30429 STATISTICS Number of nucleotides: 2936936 Number of protein genes: 2780 Number of RNA genes: 80 /// ENTRY T00557 Complete Genome NAME sae, S.aureus_Newman, STAAE, 426430 DEFINITION Staphylococcus aureus subsp. aureus Newman ANNOTATION manual TAXONOMY TAX:426430 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB Juntendo DISEASE Toxic-shock syndrome, staphylococcal scarlet fever, necrotizing pneumonia CHROMOSOME Circular SEQUENCE RS:NC_009641 LENGTH 2878897 STATISTICS Number of nucleotides: 2878897 Number of protein genes: 2614 Number of RNA genes: 72 REFERENCE PMID:17951380 AUTHORS Baba T, et al. TITLE Genome sequence of Staphylococcus aureus strain Newman and comparative analysis of staphylococcal genomes: polymorphism and evolution of two major pathogenicity islands. JOURNAL J Bacteriol 190:300-10 (2008) /// ENTRY T00558 Complete Genome NAME asu, A.succinogenes, ACTSZ, 339671 DEFINITION Actinobacillus succinogenes 130Z ANNOTATION KOALA TAXONOMY TAX:339671 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009655 LENGTH 2319663 STATISTICS Number of nucleotides: 2319663 Number of protein genes: 2079 Number of RNA genes: 82 /// ENTRY T00559 Complete Genome NAME afw, Anaeromyxobacter_Fw109-5, ANADF, 404589 DEFINITION Anaeromyxobacter sp. Fw109-5 ANNOTATION KOALA TAXONOMY TAX:404589 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Anaeromyxobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009675 LENGTH 5277990 STATISTICS Number of nucleotides: 5277990 Number of protein genes: 4466 Number of RNA genes: 57 /// ENTRY T00560 Complete Genome NAME bcy, B.cereus_NVH, BACCN, 315749 DEFINITION Bacillus cereus subsp. cytotoxis NVH 391-98 ANNOTATION KOALA TAXONOMY TAX:315749 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Foodborne Bacillus cereus intoxications CHROMOSOME Circular SEQUENCE RS:NC_009674 LENGTH 4087024 PLASMID pBC9801; Circular SEQUENCE RS:NC_009673 LENGTH 7135 STATISTICS Number of nucleotides: 4094159 Number of protein genes: 3844 Number of RNA genes: 147 REFERENCE PMID:17434157 AUTHORS Lapidus A, et al. TITLE Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity. JOURNAL Chem Biol Interact 171:236-49 (2008) /// ENTRY T00561 Complete Genome NAME mms, M.massiliensis, JANMA, 375286 DEFINITION Minibacterium massiliensis (Janthinobacterium sp. Marseille) ANNOTATION KOALA TAXONOMY TAX:375286 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium DATA_SOURCE RefSeq ORIGINAL_DB CNRS Marseille CHROMOSOME Circular SEQUENCE RS:NC_009659 LENGTH 4110251 STATISTICS Number of nucleotides: 4110251 Number of protein genes: 3697 Number of RNA genes: 53 REFERENCE PMID:17722982 AUTHORS Audic S, et al. TITLE Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria. JOURNAL PLoS Genet 3:e138 (2007) /// ENTRY T00562 Complete Genome NAME kra, K.radiotolerans, KINRD, 266940 DEFINITION Kineococcus radiotolerans SRS30216 ANNOTATION manual TAXONOMY TAX:266940 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Kineosporiineae; Kineosporiaceae; Kineococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME SEQUENCE RS:NC_009664 LENGTH 4761183 PLASMID pKRAD01 SEQUENCE RS:NC_009806 LENGTH 182572 PLASMID pKRAD02; Circular SEQUENCE RS:NC_009660 LENGTH 12917 STATISTICS Number of nucleotides: 4956672 Number of protein genes: 4681 Number of RNA genes: 64 /// ENTRY T00563 Complete Genome NAME cbf, C.botulinum_F, CLOBL, 441772 DEFINITION Clostridium botulinum F Langeland ANNOTATION KOALA TAXONOMY TAX:441772 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Los Alamos JCVI-Pathema DISEASE Botulism CHROMOSOME Circular SEQUENCE RS:NC_009699 LENGTH 3995387 PLASMID pCLI; Circular SEQUENCE RS:NC_009700 LENGTH 17531 STATISTICS Number of nucleotides: 4012918 Number of protein genes: 3655 Number of RNA genes: 158 /// ENTRY T00564 Complete Genome NAME ckl, C.kluyveri, CLOK5, 431943 DEFINITION Clostridium kluyveri DSM 555 ANNOTATION manual TAXONOMY TAX:431943 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Goettingen CHROMOSOME Circular SEQUENCE RS:NC_009706 LENGTH 3964618 PLASMID pCKL555A; Circular SEQUENCE RS:NC_009466 LENGTH 59182 STATISTICS Number of nucleotides: 4023800 Number of protein genes: 3913 Number of RNA genes: 81 REFERENCE PMID:18218779 AUTHORS Seedorf H, et al. TITLE The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features. JOURNAL Proc Natl Acad Sci U S A 105:2128-33 (2008) /// ENTRY T00565 Complete Genome NAME nis, Nitratiruptor_SB155-2, NITSB, 387092 DEFINITION Nitratiruptor sp. SB155-2 ANNOTATION KOALA TAXONOMY TAX:387092 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Nitratiruptor DATA_SOURCE RefSeq ORIGINAL_DB JAMSTEC CHROMOSOME Circular SEQUENCE RS:NC_009662 LENGTH 1877931 STATISTICS Number of nucleotides: 1877931 Number of protein genes: 1843 Number of RNA genes: 54 REFERENCE PMID:17615243 AUTHORS Nakagawa S, et al. TITLE Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens. JOURNAL Proc Natl Acad Sci U S A 104:12146-50 (2007) /// ENTRY T00566 Complete Genome NAME kpn, K.pneumoniae, KLEP7, 272620 DEFINITION Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ANNOTATION manual TAXONOMY TAX:272620 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella DATA_SOURCE RefSeq DISEASE Opportunistic infections CHROMOSOME Circular SEQUENCE RS:NC_009648 LENGTH 5315120 PLASMID pKPN3; Circular SEQUENCE RS:NC_009649 LENGTH 175879 PLASMID pKPN4; Circular SEQUENCE RS:NC_009650 LENGTH 107576 PLASMID pKPN5; Circular SEQUENCE RS:NC_009651 LENGTH 88582 PLASMID pKPN6; Circular SEQUENCE RS:NC_009652 LENGTH 4259 PLASMID pKPN7; Circular SEQUENCE RS:NC_009653 LENGTH 3478 STATISTICS Number of nucleotides: 5694894 Number of protein genes: 5185 Number of RNA genes: 111 /// ENTRY T00567 Complete Genome NAME mmw, Marinomonas_MWYL1, MARMS, 400668 DEFINITION Marinomonas sp. MWYL1 ANNOTATION manual TAXONOMY TAX:400668 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009654 LENGTH 5100344 STATISTICS Number of nucleotides: 5100344 Number of protein genes: 4439 Number of RNA genes: 110 /// ENTRY T00568 Complete Genome NAME oan, O.anthropi, OCHA4, 439375 DEFINITION Ochrobactrum anthropi ATCC 49188 ANNOTATION manual TAXONOMY TAX:439375 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum DATA_SOURCE RefSeq ORIGINAL_DB JGI DISEASE Opportunistic infections CHROMOSOME 1; Circular SEQUENCE RS:NC_009667 LENGTH 2887297 CHROMOSOME 2; Circular SEQUENCE RS:NC_009668 LENGTH 1895911 PLASMID pOANT01; Circular SEQUENCE RS:NC_009669 LENGTH 170351 PLASMID pOANT02; Circular SEQUENCE RS:NC_009670 LENGTH 101491 PLASMID pOANT03; Circular SEQUENCE RS:NC_009671 LENGTH 93589 PLASMID pOANT04; Circular SEQUENCE RS:NC_009672 LENGTH 57138 STATISTICS Number of nucleotides: 5205777 Number of protein genes: 4799 Number of RNA genes: 72 /// ENTRY T00569 Complete Genome NAME pap, P.aeruginosa_PA7, PSEA7, 381754 DEFINITION Pseudomonas aeruginosa PA7 ANNOTATION KOALA TAXONOMY TAX:381754 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JCVI DISEASE Pseudomonas aeruginosa infection CHROMOSOME Circular SEQUENCE RS:NC_009656 LENGTH 6588339 STATISTICS Number of nucleotides: 6588339 Number of protein genes: 6286 Number of RNA genes: 75 REFERENCE PMID:20107499 AUTHORS Roy PH, et al. TITLE Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7. JOURNAL PLoS One 5:e8842 (2010) /// ENTRY T00570 Complete Genome NAME ypi, Y.pseudotuberculosis_IP31758, YERP3, 349747 DEFINITION Yersinia pseudotuberculosis IP 31758 ANNOTATION KOALA TAXONOMY TAX:349747 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_009708 LENGTH 4723306 CHROMOSOME plasmid_59kb; Circular SEQUENCE RS:NC_009704 LENGTH 58679 CHROMOSOME plasmid_153kb; Circular SEQUENCE RS:NC_009705 LENGTH 153140 STATISTICS Number of nucleotides: 4935125 Number of protein genes: 4324 Number of RNA genes: 133 REFERENCE PMID:17784789 AUTHORS Eppinger M, et al. TITLE The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. JOURNAL PLoS Genet 3:e142 (2007) /// ENTRY T00571 Complete Genome NAME sbm, S.baltica_OS185, SHEB8, 402882 DEFINITION Shewanella baltica OS185 ANNOTATION KOALA TAXONOMY TAX:402882 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009665 LENGTH 5229686 PLASMID pS18501; Circular SEQUENCE RS:NC_009661 LENGTH 83224 STATISTICS Number of nucleotides: 5312910 Number of protein genes: 4394 Number of RNA genes: 139 /// ENTRY T00572 Complete Genome NAME sun, Sulfurovum_NBC37-1, SULNB, 387093 DEFINITION Sulfurovum sp. NBC37-1 ANNOTATION manual TAXONOMY TAX:387093 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum DATA_SOURCE RefSeq ORIGINAL_DB JAMSTEC CHROMOSOME Circular SEQUENCE RS:NC_009663 LENGTH 2562277 STATISTICS Number of nucleotides: 2562277 Number of protein genes: 2438 Number of RNA genes: 53 REFERENCE PMID:17615243 AUTHORS Nakagawa S, et al. TITLE Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens. JOURNAL Proc Natl Acad Sci U S A 104:12146-50 (2007) /// ENTRY T00573 Complete Genome NAME cjd, C.jejuni_doylei, CAMJD, 360109 DEFINITION Campylobacter jejuni subsp. doylei 269.97 ANNOTATION KOALA TAXONOMY TAX:360109 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_009707 LENGTH 1845106 STATISTICS Number of nucleotides: 1845106 Number of protein genes: 1731 Number of RNA genes: 58 /// ENTRY T00574 Complete Genome NAME cba, C.botulinum_A_ATCC19397, CLOB1, 441770 DEFINITION Clostridium botulinum A ATCC 19397 ANNOTATION KOALA TAXONOMY TAX:441770 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB LANL JCVI-Pathema DISEASE Botulism CHROMOSOME Circular SEQUENCE RS:NC_009697 LENGTH 3863450 STATISTICS Number of nucleotides: 3863450 Number of protein genes: 3550 Number of RNA genes: 106 REFERENCE PMID:18060065 AUTHORS Smith TJ, et al. TITLE Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids. JOURNAL PLoS One 2:e1271 (2007) /// ENTRY T00575 Complete Genome NAME cbh, C.botulinum_A_Hall, CLOBH, 441771 DEFINITION Clostridium botulinum A Hall ANNOTATION KOALA TAXONOMY TAX:441771 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB LANL JCVI-Pathema DISEASE Botulism CHROMOSOME Circular SEQUENCE RS:NC_009698 LENGTH 3760560 STATISTICS Number of nucleotides: 3760560 Number of protein genes: 3401 Number of RNA genes: 112 /// ENTRY T00576 Complete Genome NAME ccv, C.curvus, CAMC5, 360105 DEFINITION Campylobacter curvus 525.92 ANNOTATION KOALA TAXONOMY TAX:360105 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_009715 LENGTH 1971264 STATISTICS Number of nucleotides: 1971264 Number of protein genes: 1931 Number of RNA genes: 64 /// ENTRY T00577 Complete Genome NAME cha, C.hominis_BAA-381, CAMHC, 360107 DEFINITION Campylobacter hominis ATCC BAA-381 ANNOTATION KOALA TAXONOMY TAX:360107 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_009714 LENGTH 1711273 PLASMID pCH4; Circular SEQUENCE RS:NC_009713 LENGTH 3678 STATISTICS Number of nucleotides: 1714951 Number of protein genes: 1687 Number of RNA genes: 56 /// ENTRY T00578 Complete Genome NAME mbn, M.boonei, METB6, 456442 DEFINITION Candidatus Methanoregula boonei 6A8 ANNOTATION manual TAXONOMY TAX:456442 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Genera incertae sedis; Candidatus Methanoregula DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009712 LENGTH 2542943 STATISTICS Number of nucleotides: 2542943 Number of protein genes: 2450 Number of RNA genes: 53 /// ENTRY T00579 Complete Genome NAME fno, F.nodosum, FERNB, 381764 DEFINITION Fervidobacterium nodosum Rt17-B1 ANNOTATION manual TAXONOMY TAX:381764 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Fervidobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009718 LENGTH 1948941 STATISTICS Number of nucleotides: 1948941 Number of protein genes: 1750 Number of RNA genes: 58 /// ENTRY T00580 Complete Genome NAME pla, P.lavamentivorans, PARL1, 402881 DEFINITION Parvibaculum lavamentivorans DS-1 ANNOTATION manual TAXONOMY TAX:402881 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Parvibaculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009719 LENGTH 3914745 STATISTICS Number of nucleotides: 3914745 Number of protein genes: 3636 Number of RNA genes: 50 REFERENCE PMID:17557839 AUTHORS Schleheck D, et al. TITLE Parvibaculum lavamentivorans DS-1T Degrades Centrally Substituted Congeners of Commercial Linear Alkylbenzenesulfonate to Sulfophenyl Carboxylates and Sulfophenyl Dicarboxylates. JOURNAL Appl Environ Microbiol 73:4725-32 (2007) /// ENTRY T00581 Complete Genome NAME xau, X.autotrophicus, XANP2, 78245 DEFINITION Xanthobacter autotrophicus Py2 ANNOTATION KOALA TAXONOMY TAX:78245 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009720 LENGTH 5308934 PLASMID pXAUT01; Circular SEQUENCE RS:NC_009717 LENGTH 316164 STATISTICS Number of nucleotides: 5625098 Number of protein genes: 5035 Number of RNA genes: 59 /// ENTRY T00582 Complete Genome NAME bay, B.amyloliquefaciens, BACA2, 326423 DEFINITION Bacillus amyloliquefaciens FZB42 ANNOTATION KOALA TAXONOMY TAX:326423 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus DATA_SOURCE RefSeq ORIGINAL_DB Humboldt U CHROMOSOME Circular SEQUENCE RS:NC_009725 LENGTH 3918589 STATISTICS Number of nucleotides: 3918589 Number of protein genes: 3693 Number of RNA genes: 118 REFERENCE PMID:17704766 AUTHORS Chen XH, et al. TITLE Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42. JOURNAL Nat Biotechnol 25:1007-14 (2007) /// ENTRY T00583 Complete Genome NAME cbd, C.burnetii_Dugway, COXBN, 434922 DEFINITION Coxiella burnetii Dugway 5J108-111 ANNOTATION KOALA TAXONOMY TAX:434922 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_009727 LENGTH 2158758 PLASMID pQpDG; Circular SEQUENCE RS:NC_009726 LENGTH 54179 STATISTICS Number of nucleotides: 2212937 Number of protein genes: 2045 Number of RNA genes: 45 /// ENTRY T00584 Complete Genome NAME fta, F.tularensis_FTA, FRATF, 458234 DEFINITION Francisella tularensis subsp. holarctica FTNF002-00 ANNOTATION KOALA TAXONOMY TAX:458234 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella DATA_SOURCE RefSeq ORIGINAL_DB BioHealthBase CHROMOSOME Circular SEQUENCE RS:NC_009749 LENGTH 1890909 STATISTICS Number of nucleotides: 1890909 Number of protein genes: 1580 Number of RNA genes: 51 REFERENCE PMID:19756146 AUTHORS Barabote RD, et al. TITLE Complete genome sequence of Francisella tularensis subspecies holarctica FTNF002-00. JOURNAL PLoS One 4:e7041 (2009) /// ENTRY T00585 Complete Genome NAME rca, R.castenholzii, ROSCS, 383372 DEFINITION Roseiflexus castenholzii DSM 13941 ANNOTATION KOALA TAXONOMY TAX:383372 LINEAGE Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae; Roseiflexus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009767 LENGTH 5723298 STATISTICS Number of nucleotides: 5723298 Number of protein genes: 4330 Number of RNA genes: 55 /// ENTRY T00586 Complete Genome NAME esa, E.sakazakii, ENTS8, 290339 DEFINITION Enterobacter sakazakii ATCC BAA-894 ANNOTATION manual TAXONOMY TAX:290339 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cronobacter DATA_SOURCE RefSeq ORIGINAL_DB Washington U CHROMOSOME Circular SEQUENCE RS:NC_009778 LENGTH 4368373 PLASMID pESA2; Circular SEQUENCE RS:NC_009779 LENGTH 31208 PLASMID pESA3; Circular SEQUENCE RS:NC_009780 LENGTH 131196 STATISTICS Number of nucleotides: 4530777 Number of protein genes: 4420 Number of RNA genes: 128 REFERENCE PMID:20221447 AUTHORS Kucerova E, et al. TITLE Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. JOURNAL PLoS One 5:e9556 (2010) /// ENTRY T00587 Complete Genome NAME iho, I.hospitalis, IGNH4, 453591 DEFINITION Ignicoccus hospitalis KIN4/I ANNOTATION manual TAXONOMY TAX:453591 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009776 LENGTH 1297538 STATISTICS Number of nucleotides: 1297538 Number of protein genes: 1434 Number of RNA genes: 50 REFERENCE PMID:19000309 AUTHORS Podar M, et al. TITLE A genomic analysis of the archaeal system Ignicoccus hospitalis- Nanoarchaeum equitans. JOURNAL Genome Biol 9:R158 (2008) /// ENTRY T00588 Complete Genome NAME saw, S.aureus_Mu3, STAA1, 418127 DEFINITION Staphylococcus aureus subsp. aureus Mu3, MRSA strain with heterogeneous vancomycin-intermediate resistance ANNOTATION KOALA TAXONOMY TAX:418127 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB Juntendo CHROMOSOME Circular SEQUENCE RS:NC_009782 LENGTH 2880168 STATISTICS Number of nucleotides: 2880168 Number of protein genes: 2690 Number of RNA genes: 78 REFERENCE PMID:17954695 AUTHORS Neoh HM, et al. TITLE Mutated response regulator graR is responsible for phenotypic conversion of Staphylococcus aureus from heterogeneous vancomycin- intermediate resistance to vancomycin-intermediate resistance. JOURNAL Antimicrob Agents Chemother 52:45-53 (2008) /// ENTRY T00589 Complete Genome NAME vha, V.harveyi, VIBHB, 338187 DEFINITION Vibrio harveyi ATCC BAA-1116 ANNOTATION KOALA TAXONOMY TAX:338187 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB Washington U CHROMOSOME I; Circular SEQUENCE RS:NC_009783 LENGTH 3765351 CHROMOSOME II; Circular SEQUENCE RS:NC_009784 LENGTH 2204018 PLASMID pVIBHAR; Circular SEQUENCE RS:NC_009777 LENGTH 89008 STATISTICS Number of nucleotides: 6058377 Number of protein genes: 6039 Number of RNA genes: 166 /// ENTRY T00590 Complete Genome NAME ecw, E.coli_E24377A, ECO24, 331111 DEFINITION Escherichia coli O139:H28 E24377A (ETEC) ANNOTATION KOALA TAXONOMY TAX:331111 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_009801 LENGTH 4979619 PLASMID pETEC_5; Circular SEQUENCE RS:NC_009791 LENGTH 5033 PLASMID pETEC_6; Circular SEQUENCE RS:NC_009789 LENGTH 6199 PLASMID pETEC_35; Circular SEQUENCE RS:NC_009787 LENGTH 34367 PLASMID pETEC_73; Circular SEQUENCE RS:NC_009788 LENGTH 70609 PLASMID pETEC_74; Circular SEQUENCE RS:NC_009790 LENGTH 74224 PLASMID pETEC_80; Circular SEQUENCE RS:NC_009786 LENGTH 79237 STATISTICS Number of nucleotides: 5249288 Number of protein genes: 4991 Number of RNA genes: 114 REFERENCE PMID:18676672 AUTHORS Rasko DA, et al. TITLE The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. JOURNAL J Bacteriol 190:6881-93 (2008) /// ENTRY T00591 Complete Genome NAME ecx, E.coli_HS, ECOHS, 331112 DEFINITION Escherichia coli O9 HS (commensal strain) ANNOTATION KOALA TAXONOMY TAX:331112 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_009800 LENGTH 4643538 STATISTICS Number of nucleotides: 4643538 Number of protein genes: 4378 Number of RNA genes: 158 REFERENCE PMID:18676672 AUTHORS Rasko DA, et al. TITLE The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. JOURNAL J Bacteriol 190:6881-93 (2008) /// ENTRY T00592 Complete Genome NAME cko, C.koseri, CITK8, 290338 DEFINITION Citrobacter koseri ATCC BAA-895 ANNOTATION manual TAXONOMY TAX:290338 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter DATA_SOURCE RefSeq ORIGINAL_DB Washington U CHROMOSOME Circular SEQUENCE RS:NC_009792 LENGTH 4720462 PLASMID pCKO2; Circular SEQUENCE RS:NC_009794 LENGTH 5601 PLASMID pCKO3; Circular SEQUENCE RS:NC_009793 LENGTH 9294 STATISTICS Number of nucleotides: 4735357 Number of protein genes: 5008 Number of RNA genes: 144 /// ENTRY T00593 Complete Genome NAME cco, C.concisus, CAMC1, 360104 DEFINITION Campylobacter concisus 13826 ANNOTATION KOALA TAXONOMY TAX:360104 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_009802 LENGTH 2052007 PLASMID pCCON16; Circular SEQUENCE RS:NC_009796 LENGTH 16457 PLASMID pCCON31; Circular SEQUENCE RS:NC_009795 LENGTH 30949 STATISTICS Number of nucleotides: 2099413 Number of protein genes: 1985 Number of RNA genes: 59 /// ENTRY T00594 Complete Genome NAME sgo, S.gordonii, STRGC, 467705 DEFINITION Streptococcus gordonii Challis ANNOTATION manual TAXONOMY TAX:467705 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI TIGR JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_009785 LENGTH 2196662 STATISTICS Number of nucleotides: 2196662 Number of protein genes: 2051 Number of RNA genes: 73 REFERENCE PMID:17720781 AUTHORS Vickerman MM, et al. TITLE Genome-wide transcriptional changes in Streptococcus gordonii in response to competence signaling peptide. JOURNAL J Bacteriol 189:7799-807 (2007) /// ENTRY T00595 Complete Genome NAME spe, S.proteamaculans, SERP5, 399741 DEFINITION Serratia proteamaculans 568 ANNOTATION manual TAXONOMY TAX:399741 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009832 LENGTH 5448853 PLASMID pSPRO01; Circular SEQUENCE RS:NC_009829 LENGTH 46804 STATISTICS Number of nucleotides: 5495657 Number of protein genes: 4942 Number of RNA genes: 109 /// ENTRY T00596 Complete Genome NAME sse, S.sediminis, SHESH, 425104 DEFINITION Shewanella sediminis HAW-EB3 ANNOTATION manual TAXONOMY TAX:425104 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009831 LENGTH 5517674 STATISTICS Number of nucleotides: 5517674 Number of protein genes: 4497 Number of RNA genes: 164 /// ENTRY T00597 Complete Genome NAME cju, C.jejuni_81116, CAMJ8, 407148 DEFINITION Campylobacter jejuni subsp. jejuni 81116 ANNOTATION KOALA TAXONOMY TAX:407148 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB BBSRC CHROMOSOME Circular SEQUENCE RS:NC_009839 LENGTH 1628115 STATISTICS Number of nucleotides: 1628115 Number of protein genes: 1626 Number of RNA genes: 54 REFERENCE PMID:17873037 AUTHORS Pearson BM, et al. TITLE The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828). JOURNAL J Bacteriol 189:8402-3 (2007) /// ENTRY T00598 Complete Genome NAME pmh, P.marinus_MIT9215, PROM2, 93060 DEFINITION Prochlorococcus marinus str. MIT 9215 ANNOTATION KOALA TAXONOMY TAX:93060 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CHROMOSOME Circular SEQUENCE RS:NC_009840 LENGTH 1738790 STATISTICS Number of nucleotides: 1738790 Number of protein genes: 1982 Number of RNA genes: 42 REFERENCE PMID:18159947 AUTHORS Kettler GC, et al. TITLE Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. JOURNAL PLoS Genet 3:e231 (2007) /// ENTRY T00599 Complete Genome NAME bpu, B.pumilus, BACP2, 315750 DEFINITION Bacillus pumilus SAFR-032 ANNOTATION KOALA TAXONOMY TAX:315750 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus DATA_SOURCE RefSeq ORIGINAL_DB Baylor CHROMOSOME Circular SEQUENCE RS:NC_009848 LENGTH 3704465 STATISTICS Number of nucleotides: 3704465 Number of protein genes: 3678 Number of RNA genes: 93 REFERENCE PMID:17895969 AUTHORS Gioia J, et al. TITLE Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032. JOURNAL PLoS One 2:e928 (2007) /// ENTRY T00600 Complete Genome NAME abu, A.butzleri, ARCB4, 367737 DEFINITION Arcobacter butzleri RM4018 ANNOTATION KOALA TAXONOMY TAX:367737 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter DATA_SOURCE RefSeq ORIGINAL_DB USDA/ARS CHROMOSOME Circular SEQUENCE RS:NC_009850 LENGTH 2341251 STATISTICS Number of nucleotides: 2341251 Number of protein genes: 2259 Number of RNA genes: 69 REFERENCE PMID:18159241 AUTHORS Miller WG, et al. TITLE The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. JOURNAL PLoS ONE 2:e1358 (2007) /// ENTRY T00601 Complete Genome NAME rak, R.akari, RICAH, 293614 DEFINITION Rickettsia akari Hartford ANNOTATION KOALA TAXONOMY TAX:293614 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group DATA_SOURCE RefSeq ORIGINAL_DB Iowa CHROMOSOME SEQUENCE RS:NC_009881 LENGTH 1231060 STATISTICS Number of nucleotides: 1231060 Number of protein genes: 1258 Number of RNA genes: 35 /// ENTRY T00602 Complete Genome NAME rbo, R.bellii_OSU85-389, RICB8, 391896 DEFINITION Rickettsia bellii OSU 85-389 ANNOTATION KOALA TAXONOMY TAX:391896 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia DATA_SOURCE RefSeq ORIGINAL_DB Iowa CHROMOSOME SEQUENCE RS:NC_009883 LENGTH 1528980 STATISTICS Number of nucleotides: 1528980 Number of protein genes: 1475 Number of RNA genes: 36 /// ENTRY T00603 Complete Genome NAME rcm, R.canadensis, RICCK, 293613 DEFINITION Rickettsia canadensis McKiel ANNOTATION KOALA TAXONOMY TAX:293613 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; typhus group DATA_SOURCE RefSeq ORIGINAL_DB Iowa CHROMOSOME SEQUENCE RS:NC_009879 LENGTH 1159772 STATISTICS Number of nucleotides: 1159772 Number of protein genes: 1090 Number of RNA genes: 36 /// ENTRY T00604 Complete Genome NAME rri, R.rickettsii, RICRS, 392021 DEFINITION Rickettsia rickettsii Sheila Smith ANNOTATION KOALA TAXONOMY TAX:392021 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group DATA_SOURCE RefSeq ORIGINAL_DB Iowa CHROMOSOME SEQUENCE RS:NC_009882 LENGTH 1257710 STATISTICS Number of nucleotides: 1257710 Number of protein genes: 1343 Number of RNA genes: 36 /// ENTRY T00605 Complete Genome NAME rms, R.massiliae, RICM5, 416276 DEFINITION Rickettsia massiliae MTU5 ANNOTATION KOALA TAXONOMY TAX:416276 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group DATA_SOURCE RefSeq ORIGINAL_DB CNRS Marseille CHROMOSOME Circular SEQUENCE RS:NC_009900 LENGTH 1360898 PLASMID pRMA; Circular SEQUENCE RS:NC_009897 LENGTH 15286 STATISTICS Number of nucleotides: 1376184 Number of protein genes: 980 Number of RNA genes: 39 REFERENCE PMID:17916642 AUTHORS Blanc G, et al. TITLE Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome. JOURNAL Genome Res 17:1657-64 (2007) /// ENTRY T00606 Complete Genome NAME spl, S.pealeana, SHEPA, 398579 DEFINITION Shewanella pealeana ATCC 700345 ANNOTATION KOALA TAXONOMY TAX:398579 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009901 LENGTH 5174581 STATISTICS Number of nucleotides: 5174581 Number of protein genes: 4241 Number of RNA genes: 179 /// ENTRY T00607 Complete Genome NAME aoe, A.oremlandii, ALKOO, 350688 DEFINITION Alkaliphilus oremlandii OhILAs ANNOTATION KOALA TAXONOMY TAX:350688 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009922 LENGTH 3123558 STATISTICS Number of nucleotides: 3123558 Number of protein genes: 2836 Number of RNA genes: 115 /// ENTRY T00608 Complete Genome NAME fre, Frankia_EAN1pec, FRASN, 298653 DEFINITION Frankia sp. EAN1pec ANNOTATION KOALA TAXONOMY TAX:298653 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Frankiaceae; Frankia DATA_SOURCE RefSeq ORIGINAL_DB JGI RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_009921 LENGTH 8982042 STATISTICS Number of nucleotides: 8982042 Number of protein genes: 7191 Number of RNA genes: 58 /// ENTRY T00609 Complete Genome NAME azc, A.caulinodans, AZOC5, 438753 DEFINITION Azorhizobium caulinodans ORS 571 ANNOTATION KOALA TAXONOMY TAX:438753 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_009937 LENGTH 5369772 STATISTICS Number of nucleotides: 5369772 Number of protein genes: 4717 Number of RNA genes: 62 REFERENCE PMID:17720818 AUTHORS Suzuki S, et al. TITLE Rhizobial Factors Required for Stem Nodule Maturation and Maintenance in Sesbania rostrata-Azorhizobium caulinodans ORS571 Symbiosis. JOURNAL Appl Environ Microbiol 73:6650-9 (2007) /// ENTRY T00610 Complete Genome NAME dol, D.oleovorans, DESOH, 96561 DEFINITION Candidatus Desulfococcus oleovorans Hxd3 ANNOTATION manual TAXONOMY TAX:96561 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009943 LENGTH 3944167 STATISTICS Number of nucleotides: 3944167 Number of protein genes: 3265 Number of RNA genes: 52 /// ENTRY T00611 Complete Genome NAME cma, C.maquilingensis, CALMQ, 397948 DEFINITION Caldivirga maquilingensis IC-167 ANNOTATION manual TAXONOMY TAX:397948 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Caldivirga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009954 LENGTH 2077567 STATISTICS Number of nucleotides: 2077567 Number of protein genes: 1963 Number of RNA genes: 45 /// ENTRY T00612 Complete Genome NAME dsh, D.shibae, DINSH, 398580 DEFINITION Dinoroseobacter shibae DFL 12 ANNOTATION manual TAXONOMY TAX:398580 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI RoseoBase CHROMOSOME Circular SEQUENCE RS:NC_009952 LENGTH 3789584 PLASMID pDSHI01; Circular SEQUENCE RS:NC_009955 LENGTH 190506 PLASMID pDSHI02; Circular SEQUENCE RS:NC_009956 LENGTH 152970 PLASMID pDSHI03; Circular SEQUENCE RS:NC_009957 LENGTH 126304 PLASMID pDSHI04; Circular SEQUENCE RS:NC_009958 LENGTH 86208 PLASMID pDSHI05; Circular SEQUENCE RS:NC_009959 LENGTH 72296 STATISTICS Number of nucleotides: 4417868 Number of protein genes: 4192 Number of RNA genes: 50 /// ENTRY T00613 Complete Genome NAME saq, S.arenicola, SALAI, 391037 DEFINITION Salinispora arenicola CNS-205 ANNOTATION KOALA TAXONOMY TAX:391037 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micromonosporineae; Micromonosporaceae; Salinispora DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009953 LENGTH 5786361 STATISTICS Number of nucleotides: 5786361 Number of protein genes: 4917 Number of RNA genes: 63 REFERENCE PMID:19474814 AUTHORS Penn K, et al. TITLE Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria. JOURNAL ISME J 3:1193-203 (2009) /// ENTRY T00614 Complete Genome NAME hau, H.aurantiacus, HERA2, 316274 DEFINITION Herpetosiphon aurantiacus ATCC 23779 ANNOTATION KOALA TAXONOMY TAX:316274 LINEAGE Bacteria; Chloroflexi; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009972 LENGTH 6346587 PLASMID pHAU01; Circular SEQUENCE RS:NC_009973 LENGTH 339639 PLASMID pHAU02; Circular SEQUENCE RS:NC_009974 LENGTH 99204 STATISTICS Number of nucleotides: 6785430 Number of protein genes: 5278 Number of RNA genes: 68 /// ENTRY T00615 Complete Genome NAME mmx, M.maripaludis_C6, METM6, 444158 DEFINITION Methanococcus maripaludis C6 ANNOTATION KOALA TAXONOMY TAX:444158 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009975 LENGTH 1744193 STATISTICS Number of nucleotides: 1744193 Number of protein genes: 1826 Number of RNA genes: 48 /// ENTRY T00616 Complete Genome NAME pmj, P.marinus_MIT9211, PROM4, 93059 DEFINITION Prochlorococcus marinus str. MIT 9211 ANNOTATION KOALA TAXONOMY TAX:93059 LINEAGE Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus DATA_SOURCE RefSeq ORIGINAL_DB MIT CyanoBase CHROMOSOME Circular SEQUENCE RS:NC_009976 LENGTH 1688963 STATISTICS Number of nucleotides: 1688963 Number of protein genes: 1854 Number of RNA genes: 45 REFERENCE PMID:18159947 AUTHORS Kettler GC, et al. TITLE Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. JOURNAL PLoS Genet 3:e231 (2007) /// ENTRY T00617 Complete Genome NAME amr, A.marina, ACAM1, 329726 DEFINITION Acaryochloris marina MBIC11017 ANNOTATION KOALA TAXONOMY TAX:329726 LINEAGE Bacteria; Cyanobacteria; Acaryochloris DATA_SOURCE RefSeq ORIGINAL_DB TGen CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_009925 LENGTH 6503724 PLASMID pREB1; Circular SEQUENCE RS:NC_009926 LENGTH 374161 PLASMID pREB2; Circular SEQUENCE RS:NC_009927 LENGTH 356087 PLASMID pREB3; Circular SEQUENCE RS:NC_009928 LENGTH 273121 PLASMID pREB4; Circular SEQUENCE RS:NC_009929 LENGTH 226680 PLASMID pREB5; Circular SEQUENCE RS:NC_009930 LENGTH 177162 PLASMID pREB6; Circular SEQUENCE RS:NC_009931 LENGTH 172728 PLASMID pREB7; Circular SEQUENCE RS:NC_009932 LENGTH 155110 PLASMID pREB8; Circular SEQUENCE RS:NC_009933 LENGTH 120693 PLASMID pREB9; Circular SEQUENCE RS:NC_009934 LENGTH 2133 STATISTICS Number of nucleotides: 8361599 Number of protein genes: 8383 Number of RNA genes: 79 REFERENCE PMID:18252824 AUTHORS Swingley WD, et al. TITLE Niche adaptation and genome expansion in the chlorophyll d- producing cyanobacterium Acaryochloris marina. JOURNAL Proc Natl Acad Sci U S A 105:2005-10 (2008) /// ENTRY T00618 Complete Genome NAME tle, T.lettingae, THELT, 416591 DEFINITION Thermotoga lettingae TMO ANNOTATION KOALA TAXONOMY TAX:416591 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009828 LENGTH 2135342 STATISTICS Number of nucleotides: 2135342 Number of protein genes: 2040 Number of RNA genes: 51 /// ENTRY T00619 Complete Genome NAME cpy, C.phytofermentans, CLOPH, 357809 DEFINITION Clostridium phytofermentans ISDg ANNOTATION KOALA TAXONOMY TAX:357809 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB JGI JCVI-Pathema CHROMOSOME Circular SEQUENCE RS:NC_010001 LENGTH 4847594 STATISTICS Number of nucleotides: 4847594 Number of protein genes: 3902 Number of RNA genes: 88 /// ENTRY T00620 Complete Genome NAME dac, D.acidovorans, DELAS, 398578 DEFINITION Delftia acidovorans SPH-1 ANNOTATION KOALA TAXONOMY TAX:398578 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010002 LENGTH 6767514 STATISTICS Number of nucleotides: 6767514 Number of protein genes: 6040 Number of RNA genes: 97 REFERENCE PMID:15240283 AUTHORS Schleheck D, et al. TITLE Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria. JOURNAL Appl Environ Microbiol 70:4053-63 (2004) /// ENTRY T00621 Complete Genome NAME pmo, P.mobilis, PETMO, 403833 DEFINITION Petrotoga mobilis SJ95 ANNOTATION manual TAXONOMY TAX:403833 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Petrotoga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010003 LENGTH 2169548 STATISTICS Number of nucleotides: 2169548 Number of protein genes: 1898 Number of RNA genes: 56 /// ENTRY T00622 Complete Genome NAME sbn, S.baltica_OS195, SHEB9, 399599 DEFINITION Shewanella baltica OS195 ANNOTATION KOALA TAXONOMY TAX:399599 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_009997 LENGTH 5347283 PLASMID pS19501; Circular SEQUENCE RS:NC_009998 LENGTH 75605 PLASMID pS19502; Circular SEQUENCE RS:NC_009999 LENGTH 75508 PLASMID pS19503; Circular SEQUENCE RS:NC_010000 LENGTH 49148 STATISTICS Number of nucleotides: 5547544 Number of protein genes: 4688 Number of RNA genes: 142 /// ENTRY T00623 Complete Genome NAME bcs, B.canis, BRUC2, 483179 DEFINITION Brucella canis ATCC 23365 ANNOTATION KOALA TAXONOMY TAX:483179 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB PATRIC JGI CHROMOSOME I; Circular SEQUENCE RS:NC_010103 LENGTH 2105969 CHROMOSOME II; Circular SEQUENCE RS:NC_010104 LENGTH 1206800 STATISTICS Number of nucleotides: 3312769 Number of protein genes: 3251 Number of RNA genes: 71 /// ENTRY T00624 Complete Genome NAME bmu, B.multivorans, BURM1, 395019 DEFINITION Burkholderia multivorans ATCC 17616 (JGI) ANNOTATION KOALA TAXONOMY TAX:395019 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_010084 LENGTH 3448466 CHROMOSOME 2; Circular SEQUENCE RS:NC_010086 LENGTH 2472928 CHROMOSOME 3; Circular SEQUENCE RS:NC_010087 LENGTH 919806 PLASMID pBMUL01; Circular SEQUENCE RS:NC_010070 LENGTH 167422 STATISTICS Number of nucleotides: 7008622 Number of protein genes: 6258 Number of RNA genes: 82 /// ENTRY T00625 Complete Genome NAME lhe, L.helveticus, LACH4, 405566 DEFINITION Lactobacillus helveticus DPC 4571 ANNOTATION KOALA TAXONOMY TAX:405566 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB Teagasc,MFRC CHROMOSOME Circular SEQUENCE RS:NC_010080 LENGTH 2080931 STATISTICS Number of nucleotides: 2080931 Number of protein genes: 1610 Number of RNA genes: 73 REFERENCE PMID:17993529 AUTHORS Callanan M, et al. TITLE Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion. JOURNAL J Bacteriol 190:727-35 (2007) /// ENTRY T00626 Complete Genome NAME nmr, N.maritimus, NITMS, 436308 DEFINITION Nitrosopumilus maritimus SCM1 ANNOTATION manual TAXONOMY TAX:436308 LINEAGE Archaea; Thaumarchaeota; marine archaeal group 1; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010085 LENGTH 1645259 STATISTICS Number of nucleotides: 1645259 Number of protein genes: 1795 Number of RNA genes: 43 /// ENTRY T00627 Complete Genome NAME ses, S.enterica_arizonae, SALAR, 41514 DEFINITION Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- ANNOTATION KOALA TAXONOMY TAX:41514 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_010067 LENGTH 4600800 STATISTICS Number of nucleotides: 4600800 Number of protein genes: 4498 Number of RNA genes: 141 /// ENTRY T00628 Complete Genome NAME spq, S.enterica_Paratyphi_B, SALPB, 272994 DEFINITION Salmonella enterica subsp. enterica serovar Paratyphi B ANNOTATION manual TAXONOMY TAX:272994 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Paratyphi B DATA_SOURCE RefSeq DISEASE Paratyphoid fever CHROMOSOME Circular SEQUENCE RS:NC_010102 LENGTH 4858887 STATISTICS Number of nucleotides: 4858887 Number of protein genes: 5592 Number of RNA genes: 152 /// ENTRY T00629 Complete Genome NAME sax, S.aureus_USA300_TCH1516, STAAT, 451516 DEFINITION Staphylococcus aureus subsp. aureus USA300_TCH1516, community- acquired meticillin-susceptible ANNOTATION KOALA TAXONOMY TAX:451516 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB Baylor CHROMOSOME Circular SEQUENCE RS:NC_010079 LENGTH 2872915 PLASMID pUSA300HOUMR; Circular SEQUENCE RS:NC_010063 LENGTH 27041 PLASMID pUSA01-HOU; Circular SEQUENCE RS:NC_012417 LENGTH 3125 STATISTICS Number of nucleotides: 2903081 Number of protein genes: 2686 Number of RNA genes: 88 REFERENCE PMID:17986343 AUTHORS Highlander SK, et al. TITLE Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. JOURNAL BMC Microbiol 7:99 (2007) /// ENTRY T00630 Complete Genome NAME smg, S.muelleri, SULMW, 444179 DEFINITION Candidatus Sulcia muelleri GWSS ANNOTATION KOALA TAXONOMY TAX:444179 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Candidatus Sulcia DATA_SOURCE RefSeq ORIGINAL_DB U Arizona CHROMOSOME Circular SEQUENCE RS:NC_010118 LENGTH 245530 STATISTICS Number of nucleotides: 245530 Number of protein genes: 227 Number of RNA genes: 35 REFERENCE PMID:18048332 AUTHORS McCutcheon JP, Moran NA. TITLE Parallel genomic evolution and metabolic interdependence in an ancient symbiosis. JOURNAL Proc Natl Acad Sci U S A 104:19392-7 (2007) /// ENTRY T00631 Complete Genome NAME gdi, G.diazotrophicus, GLUDA, 272568 DEFINITION Gluconacetobacter diazotrophicus PAl 5 (Brazil) ANNOTATION manual TAXONOMY TAX:272568 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter DATA_SOURCE RefSeq ORIGINAL_DB Brazil RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_010125 LENGTH 3944163 PLASMID pGDIPal5I; Circular SEQUENCE RS:NC_010124 LENGTH 38818 PLASMID pGDIPal5II; Circular SEQUENCE RS:NC_010123 LENGTH 16610 STATISTICS Number of nucleotides: 3999591 Number of protein genes: 3852 Number of RNA genes: 67 REFERENCE PMID:19775431 AUTHORS Bertalan M, et al. TITLE Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5. JOURNAL BMC Genomics 10:450 (2009) /// ENTRY T00632 Complete Genome NAME cbs, C.burnetii_RSA331, COXBR, 360115 DEFINITION Coxiella burnetii RSA 331 ANNOTATION KOALA TAXONOMY TAX:360115 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_010117 LENGTH 2016427 PLASMID QpH1; Circular SEQUENCE RS:NC_010115 LENGTH 37317 STATISTICS Number of nucleotides: 2053744 Number of protein genes: 1975 Number of RNA genes: 50 /// ENTRY T00633 Complete Genome NAME nmn, N.meningitidis_053442, NEIM0, 374833 DEFINITION Neisseria meningitidis 053442 ANNOTATION KOALA TAXONOMY TAX:374833 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_010120 LENGTH 2153416 STATISTICS Number of nucleotides: 2153416 Number of protein genes: 2020 Number of RNA genes: 71 REFERENCE PMID:18031983 AUTHORS Peng J, et al. TITLE Characterization of ST-4821 complex, a unique Neisseria meningitidis clone. JOURNAL Genomics 91:78-87 (2008) /// ENTRY T00634 Complete Genome NAME scl, S.cellulosum, SORC5, 448385 DEFINITION Sorangium cellulosum So ce 56 ANNOTATION KOALA TAXONOMY TAX:448385 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld CHROMOSOME Circular SEQUENCE RS:NC_010162 LENGTH 13033779 STATISTICS Number of nucleotides: 13033779 Number of protein genes: 9381 Number of RNA genes: 319 REFERENCE PMID:17965706 AUTHORS Schneiker S, et al. TITLE Complete genome sequence of the myxobacterium Sorangium cellulosum. JOURNAL Nat Biotechnol 25:1281-9 (2007) /// ENTRY T00635 Complete Genome NAME ypg, Y.pestis_Angola, YERPG, 349746 DEFINITION Yersinia pestis Angola (biovar Antiqua) ANNOTATION KOALA TAXONOMY TAX:349746 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_010159 LENGTH 4504254 PLASMID pMT-pPCP; Circular SEQUENCE RS:NC_010158 LENGTH 114570 PLASMID new_pCD; Circular SEQUENCE RS:NC_010157 LENGTH 68190 STATISTICS Number of nucleotides: 4687014 Number of protein genes: 4041 Number of RNA genes: 118 REFERENCE PMID:20061468 AUTHORS Eppinger M, et al. TITLE Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium. JOURNAL J Bacteriol 192:1685-99 (2010) /// ENTRY T00636 Complete Genome NAME btr, B.tribocorum, BART1, 382640 DEFINITION Bartonella tribocorum CIP 105476 ANNOTATION manual TAXONOMY TAX:382640 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella DATA_SOURCE RefSeq ORIGINAL_DB Penn State CHROMOSOME Circular SEQUENCE RS:NC_010161 LENGTH 2619061 PLASMID PlasmidBtr; Circular SEQUENCE RS:NC_010160 LENGTH 23343 STATISTICS Number of nucleotides: 2642404 Number of protein genes: 2087 Number of RNA genes: 48 REFERENCE PMID:18037886 AUTHORS Saenz HL, et al. TITLE Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors. JOURNAL Nat Genet 39:1469-76 (2007) /// ENTRY T00637 Complete Genome NAME bpt, B.petrii, BORPD, 340100 DEFINITION Bordetella petrii DSM 12804 ANNOTATION KOALA TAXONOMY TAX:340100 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld CHROMOSOME Circular SEQUENCE RS:NC_010170 LENGTH 5287950 STATISTICS Number of nucleotides: 5287950 Number of protein genes: 5027 Number of RNA genes: 60 REFERENCE PMID:18826580 AUTHORS Gross R, et al. TITLE The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. JOURNAL BMC Genomics 9:449 (2008) /// ENTRY T00638 Complete Genome NAME bmt, B.suis_ATCC23445, BRUSI, 470137 DEFINITION Brucella suis ATCC 23445 ANNOTATION KOALA TAXONOMY TAX:470137 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB PATRIC JGI CHROMOSOME I; Circular SEQUENCE RS:NC_010169 LENGTH 1923763 CHROMOSOME II; Circular SEQUENCE RS:NC_010167 LENGTH 1400844 STATISTICS Number of nucleotides: 3324607 Number of protein genes: 3241 Number of RNA genes: 71 /// ENTRY T00639 Complete Genome NAME cau, C.aurantiacus, CHLAA, 324602 DEFINITION Chloroflexus aurantiacus J-10-fl ANNOTATION manual TAXONOMY TAX:324602 LINEAGE Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae; Chloroflexus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010175 LENGTH 5258541 STATISTICS Number of nucleotides: 5258541 Number of protein genes: 3853 Number of RNA genes: 60 /// ENTRY T00640 Complete Genome NAME mex, M.extorquens, METEP, 419610 DEFINITION Methylobacterium extorquens PA1 ANNOTATION manual TAXONOMY TAX:419610 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010172 LENGTH 5471154 STATISTICS Number of nucleotides: 5471154 Number of protein genes: 4829 Number of RNA genes: 75 /// ENTRY T00641 Complete Genome NAME rsa, R.salmoninarum, RENSM, 288705 DEFINITION Renibacterium salmoninarum ATCC 33209 ANNOTATION manual TAXONOMY TAX:288705 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Renibacterium DATA_SOURCE RefSeq ORIGINAL_DB NWFSC CHROMOSOME Circular SEQUENCE RS:NC_010168 LENGTH 3155250 STATISTICS Number of nucleotides: 3155250 Number of protein genes: 3507 Number of RNA genes: 51 REFERENCE PMID:18723615 AUTHORS Wiens GD, et al. TITLE Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor. JOURNAL J Bacteriol 190:6970-82 (2008) /// ENTRY T00642 Complete Genome NAME bwe, B.weihenstephanensis, BACWK, 315730 DEFINITION Bacillus weihenstephanensis KBAB4 ANNOTATION KOALA TAXONOMY TAX:315730 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010184 LENGTH 5262775 PLASMID pBWB401; Circular SEQUENCE RS:NC_010180 LENGTH 417054 PLASMID pBWB402; Circular SEQUENCE RS:NC_010181 LENGTH 75107 PLASMID pBWB403; Circular SEQUENCE RS:NC_010182 LENGTH 64977 PLASMID pBWB404; Circular SEQUENCE RS:NC_010183 LENGTH 52830 STATISTICS Number of nucleotides: 5872743 Number of protein genes: 5653 Number of RNA genes: 151 /// ENTRY T00643 Complete Genome NAME rrj, R.rickettsii_Iowa, RICRO, 452659 DEFINITION Rickettsia rickettsii Iowa ANNOTATION KOALA TAXONOMY TAX:452659 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group DATA_SOURCE RefSeq ORIGINAL_DB NIAID CHROMOSOME Circular SEQUENCE RS:NC_010263 LENGTH 1268175 STATISTICS Number of nucleotides: 1268175 Number of protein genes: 1383 Number of RNA genes: 37 REFERENCE PMID:18025092 AUTHORS Ellison DW, et al. TITLE Genomic comparison of virulent Rickettsia rickettsii Sheila Smith and avirulent Rickettsia rickettsii Iowa. JOURNAL Infect Immun 76:542-50 (2008) /// ENTRY T00644 Complete Genome NAME apj, A.pleuropneumoniae_JL03, ACTPJ, 434271 DEFINITION Actinobacillus pleuropneumoniae JL03 (serotype 3) ANNOTATION KOALA TAXONOMY TAX:434271 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus DATA_SOURCE RefSeq ORIGINAL_DB NRC Canada CHROMOSOME Circular SEQUENCE RS:NC_010278 LENGTH 2242062 STATISTICS Number of nucleotides: 2242062 Number of protein genes: 2036 Number of RNA genes: 82 REFERENCE PMID:18197260 AUTHORS Xu Z, et al. TITLE Genome biology of Actinobacillus pleuropneumoniae JL03, an isolate of serotype 3 prevalent in China. JOURNAL PLoS One 3:e1450 (2008) /// ENTRY T00645 Complete Genome NAME ctb, C.trachomatis_434Bu, CHLT2, 471472 DEFINITION Chlamydia trachomatis 434/Bu ANNOTATION KOALA TAXONOMY TAX:471472 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_010287 LENGTH 1038842 STATISTICS Number of nucleotides: 1038842 Number of protein genes: 874 Number of RNA genes: 43 REFERENCE PMID:18032721 AUTHORS Thomson NR, et al. TITLE Chlamydia trachomatis: Genome sequence analysis of lymphogranuloma venereum isolates. JOURNAL Genome Res 18:161-71 (2008) /// ENTRY T00646 Complete Genome NAME ctl, C.trachomatis_L2b, CHLTB, 471473 DEFINITION Chlamydia trachomatis L2b/UCH-1/proctitis ANNOTATION KOALA TAXONOMY TAX:471473 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_010280 LENGTH 1038869 STATISTICS Number of nucleotides: 1038869 Number of protein genes: 874 Number of RNA genes: 43 REFERENCE PMID:18032721 AUTHORS Thomson NR, et al. TITLE Chlamydia trachomatis: Genome sequence analysis of lymphogranuloma venereum isolates. JOURNAL Genome Res 18:161-71 (2008) /// ENTRY T00647 Complete Genome NAME mar, M.aeruginosa, MICAN, 449447 DEFINITION Microcystis aeruginosa NIES-843 ANNOTATION KOALA TAXONOMY TAX:449447 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Microcystis DATA_SOURCE RefSeq ORIGINAL_DB CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_010296 LENGTH 5842795 STATISTICS Number of nucleotides: 5842795 Number of protein genes: 6312 Number of RNA genes: 52 REFERENCE PMID:18192279 AUTHORS Kaneko T, et al. TITLE Complete Genomic Structure of the Bloom-forming Toxic Cyanobacterium Microcystis aeruginosa NIES-843. JOURNAL DNA Res 14:247-56 (2007) /// ENTRY T00648 Complete Genome NAME tex, Thermoanaerobacter_X514, THEPX, 399726 DEFINITION Thermoanaerobacter sp. X514 ANNOTATION KOALA TAXONOMY TAX:399726 LINEAGE Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010320 LENGTH 2457259 STATISTICS Number of nucleotides: 2457259 Number of protein genes: 2349 Number of RNA genes: 73 /// ENTRY T00649 Complete Genome NAME tpd, T.pseudethanolicus, THEP3, 340099 DEFINITION Thermoanaerobacter pseudethanolicus ATCC 33223 ANNOTATION KOALA TAXONOMY TAX:340099 LINEAGE Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010321 LENGTH 2362816 STATISTICS Number of nucleotides: 2362816 Number of protein genes: 2243 Number of RNA genes: 75 /// ENTRY T00650 Complete Genome NAME ppg, P.putida_GB1, PSEPG, 76869 DEFINITION Pseudomonas putida GB-1 ANNOTATION KOALA TAXONOMY TAX:76869 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010322 LENGTH 6078430 STATISTICS Number of nucleotides: 6078430 Number of protein genes: 5408 Number of RNA genes: 101 /// ENTRY T00651 Complete Genome NAME cak, Caulobacter_K31, CAUSK, 366602 DEFINITION Caulobacter sp. K31 ANNOTATION KOALA TAXONOMY TAX:366602 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010338 LENGTH 5477872 PLASMID pCAUL01; Circular SEQUENCE RS:NC_010335 LENGTH 233649 PLASMID pCAUL02; Circular SEQUENCE RS:NC_010333 LENGTH 177878 STATISTICS Number of nucleotides: 5889399 Number of protein genes: 5438 Number of RNA genes: 58 /// ENTRY T00652 Complete Genome NAME fph, F.philomiragia, FRAP2, 484022 DEFINITION Francisella philomiragia subsp. philomiragia ATCC 25017 ANNOTATION KOALA TAXONOMY TAX:484022 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010336 LENGTH 2045775 PLASMID pFPHI01; Circular SEQUENCE RS:NC_010331 LENGTH 3936 STATISTICS Number of nucleotides: 2049711 Number of protein genes: 1915 Number of RNA genes: 48 /// ENTRY T00653 Complete Genome NAME hmo, H.modesticaldum, HELMI, 498761 DEFINITION Heliobacterium modesticaldum Ice1 ANNOTATION KOALA TAXONOMY TAX:498761 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium DATA_SOURCE RefSeq ORIGINAL_DB TGen CHROMOSOME Circular SEQUENCE RS:NC_010337 LENGTH 3075407 STATISTICS Number of nucleotides: 3075407 Number of protein genes: 3000 Number of RNA genes: 130 REFERENCE PMID:18441057 AUTHORS Sattley WM, et al. TITLE The genome of Heliobacterium modesticaldum, a phototrophic representative of the Firmicutes containing the simplest photosynthetic apparatus. JOURNAL J Bacteriol 190:4687-96 (2008) /// ENTRY T00654 Complete Genome NAME shl, S.halifaxensis, SHEHH, 458817 DEFINITION Shewanella halifaxensis HAW-EB4 ANNOTATION KOALA TAXONOMY TAX:458817 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010334 LENGTH 5226917 STATISTICS Number of nucleotides: 5226917 Number of protein genes: 4278 Number of RNA genes: 157 /// ENTRY T00655 Complete Genome NAME dau, D.audaxviator, DESAP, 477974 DEFINITION Candidatus Desulforudis audaxviator MP104C ANNOTATION KOALA TAXONOMY TAX:477974 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010424 LENGTH 2349476 STATISTICS Number of nucleotides: 2349476 Number of protein genes: 2157 Number of RNA genes: 56 REFERENCE PMID:18845759 AUTHORS Chivian D, et al. TITLE Environmental genomics reveals a single-species ecosystem deep within Earth. JOURNAL Science 322:275-8 (2008) /// ENTRY T00656 Complete Genome NAME lsp, L.sphaericus, LYSSC, 444177 DEFINITION Lysinibacillus sphaericus C3-41 ANNOTATION KOALA TAXONOMY TAX:444177 LINEAGE Bacteria; Firmicutes; Bacillales; Planococcaceae; Lysinibacillus DATA_SOURCE RefSeq ORIGINAL_DB Wuhan CHROMOSOME Circular SEQUENCE RS:NC_010382 LENGTH 4639821 PLASMID pBsph; Circular SEQUENCE RS:NC_010381 LENGTH 177642 STATISTICS Number of nucleotides: 4817463 Number of protein genes: 4771 Number of RNA genes: 116 REFERENCE PMID:18296527 AUTHORS Hu X, et al. TITLE Complete genome sequence of the mosquitocidal bacterium Bacillus sphaericus C3-41 and comparison with those of closely related Bacillus species. JOURNAL J Bacteriol 190:2892-902 (2008) /// ENTRY T00657 Complete Genome NAME mab, M.abscessus, MYCAB, 561007 DEFINITION Mycobacterium abscessus ATCC 19977 ANNOTATION manual TAXONOMY TAX:561007 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium abscessus DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_010397 LENGTH 5067172 PLASMID plasmid; Circular SEQUENCE RS:NC_010394 LENGTH 23319 STATISTICS Number of nucleotides: 5090491 Number of protein genes: 4941 Number of RNA genes: 50 REFERENCE PMID:19543527 AUTHORS Ripoll F, et al. TITLE Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus. JOURNAL PLoS One 4:e5660 (2009) /// ENTRY T00658 Complete Genome NAME spv, S.pneumoniae_Hungary19A_6, STRPI, 487214 DEFINITION Streptococcus pneumoniae Hungary19A-6 ANNOTATION manual TAXONOMY TAX:487214 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_010380 LENGTH 2245615 STATISTICS Number of nucleotides: 2245615 Number of protein genes: 2155 Number of RNA genes: 70 /// ENTRY T00659 Complete Genome NAME acl, A.laidlawii, ACHLI, 441768 DEFINITION Acholeplasma laidlawii PG-8A ANNOTATION KOALA TAXONOMY TAX:441768 LINEAGE Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_010163 LENGTH 1496992 STATISTICS Number of nucleotides: 1496992 Number of protein genes: 1380 Number of RNA genes: 42 /// ENTRY T00660 Complete Genome NAME abm, A.baumannii_SDF, ACIBS, 509170 DEFINITION Acinetobacter baumannii SDF ANNOTATION manual TAXONOMY TAX:509170 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_010400 LENGTH 3421954 PLASMID p1ABSDF; Circular SEQUENCE RS:NC_010395 LENGTH 6106 PLASMID p2ABSDF; Circular SEQUENCE RS:NC_010396 LENGTH 25014 PLASMID p3ABSDF; Circular SEQUENCE RS:NC_010398 LENGTH 24922 STATISTICS Number of nucleotides: 3477996 Number of protein genes: 2975 Number of RNA genes: 87 REFERENCE PMID:18350144 AUTHORS Vallenet D, et al. TITLE Comparative analysis of Acinetobacters: three genomes for three lifestyles. JOURNAL PLoS ONE 3:e1805 (2008) /// ENTRY T00661 Complete Genome NAME fma, F.magna, FINM2, 334413 DEFINITION Finegoldia magna ATCC 29328 ANNOTATION manual TAXONOMY TAX:334413 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis; Finegoldia DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo CHROMOSOME Circular SEQUENCE RS:NC_010376 LENGTH 1797577 PLASMID pFMC; Circular SEQUENCE RS:NC_010371 LENGTH 189163 STATISTICS Number of nucleotides: 1986740 Number of protein genes: 1813 Number of RNA genes: 60 REFERENCE PMID:18263572 AUTHORS Goto T, et al. TITLE Complete Genome Sequence of Finegoldia magna, an Anaerobic Opportunistic Pathogen. JOURNAL DNA Res 15:39-47 (2008) /// ENTRY T00662 Complete Genome NAME hsl, H.salinarum, HALS3, 478009 DEFINITION Halobacterium salinarum R1 ANNOTATION KOALA TAXONOMY TAX:478009 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium DATA_SOURCE RefSeq ORIGINAL_DB MPI CHROMOSOME Circular SEQUENCE RS:NC_010364 LENGTH 2000962 PLASMID PHS1; Circular SEQUENCE RS:NC_010366 LENGTH 147625 PLASMID PHS2; Circular SEQUENCE RS:NC_010369 LENGTH 194963 PLASMID PHS3; Circular SEQUENCE RS:NC_010368 LENGTH 284332 PLASMID PHS4; Circular SEQUENCE RS:NC_010367 LENGTH 40894 STATISTICS Number of nucleotides: 2668776 Number of protein genes: 2749 Number of RNA genes: 52 REFERENCE PMID:18313895 AUTHORS Pfeiffer F, et al. TITLE Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. JOURNAL Genomics 91:335-46 (2008) /// ENTRY T00663 Complete Genome NAME lci, L.citreum, LEUCK, 349519 DEFINITION Leuconostoc citreum KM20 ANNOTATION KOALA TAXONOMY TAX:349519 LINEAGE Bacteria; Firmicutes; Lactobacillales; Leuconostoc DATA_SOURCE RefSeq ORIGINAL_DB KRIBB CHROMOSOME Circular SEQUENCE RS:NC_010471 LENGTH 1796284 PLASMID pLCK1; Circular SEQUENCE RS:NC_010470 LENGTH 38713 PLASMID pLCK2; Circular SEQUENCE RS:NC_010466 LENGTH 31463 PLASMID pLCK3; Circular SEQUENCE RS:NC_010467 LENGTH 17971 PLASMID pLCK4; Circular SEQUENCE RS:NC_010469 LENGTH 12183 STATISTICS Number of nucleotides: 1896614 Number of protein genes: 1820 Number of RNA genes: 82 REFERENCE PMID:18281406 AUTHORS Kim JF, et al. TITLE Complete genome sequence of Leuconostoc citreum KM20. JOURNAL J Bacteriol 190:3093-4 (2008) /// ENTRY T00664 Complete Genome NAME syp, Synechococcus_PCC7002, SYNP2, 32049 DEFINITION Synechococcus sp. PCC 7002 ANNOTATION manual TAXONOMY TAX:32049 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Synechococcus DATA_SOURCE RefSeq ORIGINAL_DB Penn State CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_010475 LENGTH 3008047 PLASMID pAQ1; Circular SEQUENCE RS:NC_010476 LENGTH 4809 PLASMID pAQ3; Circular SEQUENCE RS:NC_010477 LENGTH 16103 PLASMID pAQ4; Circular SEQUENCE RS:NC_010478 LENGTH 31972 PLASMID pAQ5; Circular SEQUENCE RS:NC_010479 LENGTH 38515 PLASMID pAQ6; Circular SEQUENCE RS:NC_010480 LENGTH 124030 PLASMID pAQ7; Circular SEQUENCE RS:NC_010474 LENGTH 186459 STATISTICS Number of nucleotides: 3409935 Number of protein genes: 3186 Number of RNA genes: 49 /// ENTRY T00665 Complete Genome NAME ypy, Y.pseudotuberculosis_YPIII, YERPY, 502800 DEFINITION Yersinia pseudotuberculosis YPIII ANNOTATION KOALA TAXONOMY TAX:502800 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010465 LENGTH 4689441 STATISTICS Number of nucleotides: 4689441 Number of protein genes: 4192 Number of RNA genes: 98 /// ENTRY T00666 Complete Genome NAME ecd, E.coli_DH10B, ECODH, 316385 DEFINITION Escherichia coli K-12 DH10B ANNOTATION KOALA TAXONOMY TAX:316385 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Wisconsin CHROMOSOME Circular SEQUENCE RS:NC_010473 LENGTH 4686137 STATISTICS Number of nucleotides: 4686137 Number of protein genes: 4126 Number of RNA genes: 157 REFERENCE PMID:18245285 AUTHORS Durfee T, et al. TITLE The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. JOURNAL J Bacteriol 190:2597-606 (2008) /// ENTRY T00667 Complete Genome NAME aby, A.baumannii_AYE, ACIBY, 509173 DEFINITION Acinetobacter baumannii AYE ANNOTATION manual TAXONOMY TAX:509173 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_010410 LENGTH 3936291 PLASMID p1ABAYE; Circular SEQUENCE RS:NC_010401 LENGTH 5644 PLASMID p2ABAYE; Circular SEQUENCE RS:NC_010402 LENGTH 9661 PLASMID p3ABAYE; Circular SEQUENCE RS:NC_010404 LENGTH 94413 PLASMID p4ABAYE; Circular SEQUENCE RS:NC_010403 LENGTH 2726 STATISTICS Number of nucleotides: 4048735 Number of protein genes: 3712 Number of RNA genes: 101 REFERENCE PMID:18350144 AUTHORS Vallenet D, et al. TITLE Comparative analysis of Acinetobacters: three genomes for three lifestyles. JOURNAL PLoS ONE 3:e1805 (2008) /// ENTRY T00668 Complete Genome NAME kcr, K.cryptofilum, KORCO, 374847 DEFINITION Candidatus Korarchaeum cryptofilum OPF8 ANNOTATION KOALA TAXONOMY TAX:374847 LINEAGE Archaea; Korarchaeota; Candidatus Korarchaeum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010482 LENGTH 1590757 STATISTICS Number of nucleotides: 1590757 Number of protein genes: 1602 Number of RNA genes: 49 REFERENCE PMID:18535141 AUTHORS Elkins JG, et al. TITLE A korarchaeal genome reveals insights into the evolution of the Archaea. JOURNAL Proc Natl Acad Sci U S A 105:8102-7 (2008) /// ENTRY T00669 Complete Genome NAME bcm, B.cenocepacia_MC0-3, BURCC, 406425 DEFINITION Burkholderia cenocepacia MC0-3 ANNOTATION KOALA TAXONOMY TAX:406425 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_010508 LENGTH 3532883 CHROMOSOME 2; Circular SEQUENCE RS:NC_010515 LENGTH 3213911 CHROMOSOME 3; Circular SEQUENCE RS:NC_010512 LENGTH 1224595 STATISTICS Number of nucleotides: 7971389 Number of protein genes: 7008 Number of RNA genes: 88 /// ENTRY T00670 Complete Genome NAME cbl, C.botulinum_A3_LochMaree, CLOBM, 498214 DEFINITION Clostridium botulinum A3 Loch Maree ANNOTATION KOALA TAXONOMY TAX:498214 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB LANL JCVI-Pathema CHROMOSOME Circular SEQUENCE RS:NC_010520 LENGTH 3992906 PLASMID pCLK; Circular SEQUENCE RS:NC_010418 LENGTH 266785 STATISTICS Number of nucleotides: 4259691 Number of protein genes: 3983 Number of RNA genes: 114 REFERENCE PMID:18060065 AUTHORS Smith TJ, et al. TITLE Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids. JOURNAL PLoS One 2:e1271 (2007) /// ENTRY T00671 Complete Genome NAME cbb, C.botulinum_B1, CLOBK, 498213 DEFINITION Clostridium botulinum B1 Okra ANNOTATION KOALA TAXONOMY TAX:498213 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB LANL JCVI-Pathema CHROMOSOME Circular SEQUENCE RS:NC_010516 LENGTH 3958233 PLASMID pCLD; Circular SEQUENCE RS:NC_010379 LENGTH 148780 STATISTICS Number of nucleotides: 4107013 Number of protein genes: 3846 Number of RNA genes: 112 REFERENCE PMID:18060065 AUTHORS Smith TJ, et al. TITLE Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids. JOURNAL PLoS One 2:e1271 (2007) /// ENTRY T00672 Complete Genome NAME ecm, E.coli_SECEC, ECOSM, 439855 DEFINITION Escherichia coli SECEC SMS-3-5 ANNOTATION KOALA TAXONOMY TAX:439855 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_010498 LENGTH 5068389 PLASMID pSMS35_3; Circular SEQUENCE RS:NC_010487 LENGTH 3565 PLASMID pSMS35_4; Circular SEQUENCE RS:NC_010486 LENGTH 4074 PLASMID pSMS35_8; Circular SEQUENCE RS:NC_010485 LENGTH 8909 PLASMID pSMS35_130; Circular SEQUENCE RS:NC_010488 LENGTH 130440 STATISTICS Number of nucleotides: 5215377 Number of protein genes: 4913 Number of RNA genes: 112 REFERENCE PMID:18708504 AUTHORS Fricke WF, et al. TITLE Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. JOURNAL J Bacteriol 190:6779-94 (2008) /// ENTRY T00673 Complete Genome NAME hsm, H.somnus_2336, HAES2, 228400 DEFINITION Haemophilus somnus 2336 ANNOTATION KOALA TAXONOMY TAX:228400 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Histophilus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010519 LENGTH 2263857 STATISTICS Number of nucleotides: 2263857 Number of protein genes: 1980 Number of RNA genes: 65 /// ENTRY T00674 Complete Genome NAME mrd, M.radiotolerans, METRJ, 426355 DEFINITION Methylobacterium radiotolerans JCM 2831 ANNOTATION KOALA TAXONOMY TAX:426355 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010505 LENGTH 6077833 PLASMID pMRAD01; Circular SEQUENCE RS:NC_010510 LENGTH 586164 PLASMID pMRAD02; Circular SEQUENCE RS:NC_010509 LENGTH 47003 PLASMID pMRAD03; Circular SEQUENCE RS:NC_010514 LENGTH 42985 PLASMID pMRAD04; Circular SEQUENCE RS:NC_010517 LENGTH 37743 PLASMID pMRAD05; Circular SEQUENCE RS:NC_010518 LENGTH 36410 PLASMID pMRAD06; Circular SEQUENCE RS:NC_010502 LENGTH 27836 PLASMID pMRAD07; Circular SEQUENCE RS:NC_010504 LENGTH 22114 PLASMID pMRAD08; Circular SEQUENCE RS:NC_010507 LENGTH 21022 STATISTICS Number of nucleotides: 6899110 Number of protein genes: 6431 Number of RNA genes: 81 /// ENTRY T00675 Complete Genome NAME ppw, P.putida_W619, PSEPW, 390235 DEFINITION Pseudomonas putida W619 ANNOTATION KOALA TAXONOMY TAX:390235 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010501 LENGTH 5774330 STATISTICS Number of nucleotides: 5774330 Number of protein genes: 5182 Number of RNA genes: 100 /// ENTRY T00676 Complete Genome NAME swd, S.woodyi, SHEWM, 392500 DEFINITION Shewanella woodyi ATCC 51908 ANNOTATION KOALA TAXONOMY TAX:392500 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010506 LENGTH 5935403 STATISTICS Number of nucleotides: 5935403 Number of protein genes: 4880 Number of RNA genes: 165 /// ENTRY T00677 Complete Genome NAME xfm, X.fastidiosa_M12, XYLFM, 405440 DEFINITION Xylella fastidiosa M12 ANNOTATION KOALA TAXONOMY TAX:405440 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010513 LENGTH 2475130 STATISTICS Number of nucleotides: 2475130 Number of protein genes: 2104 Number of RNA genes: 58 /// ENTRY T00678 Complete Genome NAME cms, C.michiganensis_sepedonicus, CLAMS, 31964 DEFINITION Clavibacter michiganensis subsp. sepedonicus ATCC 33113 ANNOTATION KOALA TAXONOMY TAX:31964 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Microbacteriaceae; Clavibacter DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_010407 LENGTH 3258645 PLASMID pCS1; Circular SEQUENCE RS:NC_010399 LENGTH 50350 PLASMID pCSL1; Circular SEQUENCE RS:NC_010408 LENGTH 94791 STATISTICS Number of nucleotides: 3403786 Number of protein genes: 3116 Number of RNA genes: 51 REFERENCE PMID:18192393 AUTHORS Bentley SD, et al. TITLE Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation. JOURNAL J Bacteriol 190:2150-60 (2008) /// ENTRY T00679 Complete Genome NAME met, Methylobacterium_4-46, METS4, 426117 DEFINITION Methylobacterium sp. 4-46 ANNOTATION KOALA TAXONOMY TAX:426117 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010511 LENGTH 7659055 PLASMID pM44601; Circular SEQUENCE RS:NC_010373 LENGTH 57951 PLASMID pM44602; Circular SEQUENCE RS:NC_010374 LENGTH 20019 STATISTICS Number of nucleotides: 7737025 Number of protein genes: 6692 Number of RNA genes: 83 /// ENTRY T00680 Complete Genome NAME upa, U.parvum, UREP2, 505682 DEFINITION Ureaplasma parvum serovar 3 ATCC 27815 ANNOTATION KOALA TAXONOMY TAX:505682 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Ureaplasma DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_010503 LENGTH 751679 STATISTICS Number of nucleotides: 751679 Number of protein genes: 609 Number of RNA genes: 32 /// ENTRY T00681 Complete Genome NAME lch, L.cholodnii, LEPCP, 395495 DEFINITION Leptothrix cholodnii SP-6 ANNOTATION manual TAXONOMY TAX:395495 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010524 LENGTH 4909403 STATISTICS Number of nucleotides: 4909403 Number of protein genes: 4363 Number of RNA genes: 59 /// ENTRY T00682 Complete Genome NAME tne, T.neutrophilus, THENV, 444157 DEFINITION Thermoproteus neutrophilus V24Sta ANNOTATION KOALA TAXONOMY TAX:444157 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Thermoproteus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010525 LENGTH 1769823 STATISTICS Number of nucleotides: 1769823 Number of protein genes: 1966 Number of RNA genes: 43 /// ENTRY T00683 Complete Genome NAME pne, P.necessarius, POLNS, 452638 DEFINITION Polynucleobacter necessarius subsp. necessarius STIR1 ANNOTATION KOALA TAXONOMY TAX:452638 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010531 LENGTH 1560469 STATISTICS Number of nucleotides: 1560469 Number of protein genes: 1508 Number of RNA genes: 43 /// ENTRY T00684 Complete Genome NAME bac, B.ambifaria_MC40-6, BURA4, 398577 DEFINITION Burkholderia ambifaria MC40-6 ANNOTATION KOALA TAXONOMY TAX:398577 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_010551 LENGTH 3443583 CHROMOSOME 2; Circular SEQUENCE RS:NC_010552 LENGTH 2769414 CHROMOSOME 3; Circular SEQUENCE RS:NC_010557 LENGTH 1127947 PLASMID pBMC401; Circular SEQUENCE RS:NC_010553 LENGTH 301592 STATISTICS Number of nucleotides: 7642536 Number of protein genes: 6697 Number of RNA genes: 89 /// ENTRY T00685 Complete Genome NAME cur, C.urealyticum, CORU7, 504474 DEFINITION Corynebacterium urealyticum DSM 7109 ANNOTATION KOALA TAXONOMY TAX:504474 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld CHROMOSOME Circular SEQUENCE RS:NC_010545 LENGTH 2369219 STATISTICS Number of nucleotides: 2369219 Number of protein genes: 2022 Number of RNA genes: 60 REFERENCE PMID:18367281 AUTHORS Tauch A, et al. TITLE The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. JOURNAL J Biotechnol 136:11-21 (2008) /// ENTRY T00686 Complete Genome NAME cyt, Cyanothece_ATCC51142, CYAA5, 43989 DEFINITION Cyanothece sp. ATCC 51142 ANNOTATION manual TAXONOMY TAX:43989 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Cyanothece DATA_SOURCE RefSeq ORIGINAL_DB Washington U CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_010546 LENGTH 4934271 CHROMOSOME SEQUENCE RS:NC_010547 LENGTH 429701 PLASMID A; Circular SEQUENCE RS:NC_010539 LENGTH 39620 PLASMID B; Circular SEQUENCE RS:NC_010541 LENGTH 31856 PLASMID C; Circular SEQUENCE RS:NC_010542 LENGTH 14685 PLASMID D; Circular SEQUENCE RS:NC_010543 LENGTH 10244 STATISTICS Number of nucleotides: 5460377 Number of protein genes: 5303 Number of RNA genes: 55 REFERENCE PMID:18812508 AUTHORS Welsh EA, et al. TITLE The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle. JOURNAL Proc Natl Acad Sci U S A 105:15094-9 (2008) /// ENTRY T00687 Complete Genome NAME esi, E.sibiricum, EXIS2, 262543 DEFINITION Exiguobacterium sibiricum 255-15 ANNOTATION manual TAXONOMY TAX:262543 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010556 LENGTH 3034136 PLASMID pEXIG01; Circular SEQUENCE RS:NC_010549 LENGTH 4885 PLASMID pEXIG02; Circular SEQUENCE RS:NC_010550 LENGTH 1765 STATISTICS Number of nucleotides: 3040786 Number of protein genes: 3015 Number of RNA genes: 99 REFERENCE PMID:16489412 AUTHORS Rodrigues DF, et al. TITLE Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. JOURNAL Extremophiles 10:285-94 (2006) /// ENTRY T00688 Complete Genome NAME bid, B.indica, BEII9, 395963 DEFINITION Beijerinckia indica subsp. indica ATCC 9039 ANNOTATION KOALA TAXONOMY TAX:395963 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010581 LENGTH 4170153 PLASMID pBIND01; Circular SEQUENCE RS:NC_010580 LENGTH 181736 PLASMID pBIND02; Circular SEQUENCE RS:NC_010578 LENGTH 66727 STATISTICS Number of nucleotides: 4418616 Number of protein genes: 3784 Number of RNA genes: 64 /// ENTRY T00689 Complete Genome NAME ote, O.terrae, OPITP, 452637 DEFINITION Opitutus terrae PB90-1 ANNOTATION KOALA TAXONOMY TAX:452637 LINEAGE Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010571 LENGTH 5957605 STATISTICS Number of nucleotides: 5957605 Number of protein genes: 4612 Number of RNA genes: 71 /// ENTRY T00690 Complete Genome NAME spw, S.pneumoniae_CGSP14, STRPS, 516950 DEFINITION Streptococcus pneumoniae CGSP14 (serotype 14) ANNOTATION manual TAXONOMY TAX:516950 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_010582 LENGTH 2209198 STATISTICS Number of nucleotides: 2209198 Number of protein genes: 2206 Number of RNA genes: 70 REFERENCE PMID:19361343 AUTHORS Ding F, et al. TITLE Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14. JOURNAL BMC Genomics 10:158 (2009) /// ENTRY T00691 Complete Genome NAME sgr, S.griseus, STRGG, 455632 DEFINITION Streptomyces griseus subsp. griseus NBRC 13350 ANNOTATION KOALA TAXONOMY TAX:455632 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo Kitasato CHROMOSOME SEQUENCE RS:NC_010572 LENGTH 8545929 STATISTICS Number of nucleotides: 8545929 Number of protein genes: 7136 Number of RNA genes: 86 REFERENCE PMID:18375553 AUTHORS Ohnishi Y, et al. TITLE Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350. JOURNAL J Bacteriol 190:4050-60 (2008) /// ENTRY T00692 Complete Genome NAME xfn, X.fastidiosa_M23, XYLF2, 405441 DEFINITION Xylella fastidiosa M23 ANNOTATION KOALA TAXONOMY TAX:405441 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010577 LENGTH 2535690 PLASMID pXFAS01; Circular SEQUENCE RS:NC_010579 LENGTH 38297 STATISTICS Number of nucleotides: 2573987 Number of protein genes: 2201 Number of RNA genes: 59 /// ENTRY T00693 Complete Genome NAME lbi, L.biflexa, LEPBP, 456481 DEFINITION Leptospira biflexa serovar Patoc Patoc 1 (Paris) ANNOTATION KOALA TAXONOMY TAX:456481 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira DATA_SOURCE RefSeq ORIGINAL_DB Pasteur CHROMOSOME I; Circular SEQUENCE RS:NC_010602 LENGTH 3599677 CHROMOSOME II; Circular SEQUENCE RS:NC_010843 LENGTH 277655 PLASMID p74; Circular SEQUENCE RS:NC_010844 LENGTH 74116 STATISTICS Number of nucleotides: 3951448 Number of protein genes: 3726 Number of RNA genes: 44 REFERENCE PMID:18270594 AUTHORS Picardeau M, et al. TITLE Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis. JOURNAL PLoS One 3:e1607 (2008) /// ENTRY T00694 Complete Genome NAME mmi, M.marinum, MYCMM, 216594 DEFINITION Mycobacterium marinum M ANNOTATION KOALA TAXONOMY TAX:216594 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_010612 LENGTH 6636827 PLASMID pMM23; Circular SEQUENCE RS:NC_010604 LENGTH 23317 STATISTICS Number of nucleotides: 6660144 Number of protein genes: 5452 Number of RNA genes: 51 REFERENCE PMID:18403782 AUTHORS Stinear TP, et al. TITLE Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis. JOURNAL Genome Res 18:729-41 (2008) /// ENTRY T00695 Complete Genome NAME bav, B.avium, BORA1, 360910 DEFINITION Bordetella avium 197N ANNOTATION KOALA TAXONOMY TAX:360910 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_010645 LENGTH 3732255 STATISTICS Number of nucleotides: 3732255 Number of protein genes: 3381 Number of RNA genes: 74 REFERENCE PMID:16885469 AUTHORS Sebaihia M, et al. TITLE Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction. JOURNAL J Bacteriol 188:6002-15 (2006) /// ENTRY T00696 Complete Genome NAME cbk, C.botulinum_B_Eklund, CLOBB, 508765 DEFINITION Clostridium botulinum B Eklund 17B ANNOTATION KOALA TAXONOMY TAX:508765 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB LANL CHROMOSOME Circular SEQUENCE RS:NC_010674 LENGTH 3800327 PLASMID pCLL; Circular SEQUENCE RS:NC_010680 LENGTH 47642 STATISTICS Number of nucleotides: 3847969 Number of protein genes: 3475 Number of RNA genes: 116 /// ENTRY T00697 Complete Genome NAME ecl, E.coli_ATCC8739, ECOLC, 481805 DEFINITION Escherichia coli ATCC 8739 ANNOTATION KOALA TAXONOMY TAX:481805 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010468 LENGTH 4746218 STATISTICS Number of nucleotides: 4746218 Number of protein genes: 4199 Number of RNA genes: 128 /// ENTRY T00698 Complete Genome NAME ftm, F.tularensis_FSC147, FRATM, 441952 DEFINITION Francisella tularensis subsp. mediasiatica FSC147 ANNOTATION KOALA TAXONOMY TAX:441952 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_010677 LENGTH 1893886 STATISTICS Number of nucleotides: 1893886 Number of protein genes: 1406 Number of RNA genes: 47 REFERENCE PMID:19521508 AUTHORS Larsson P, et al. TITLE Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen. JOURNAL PLoS Pathog 5:e1000472 (2009) /// ENTRY T00699 Complete Genome NAME lfe, L.fermentum, LACF3, 334390 DEFINITION Lactobacillus fermentum IFO 3956 ANNOTATION KOALA TAXONOMY TAX:334390 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo CHROMOSOME Circular SEQUENCE RS:NC_010610 LENGTH 2098685 STATISTICS Number of nucleotides: 2098685 Number of protein genes: 1843 Number of RNA genes: 69 REFERENCE PMID:18487258 AUTHORS Morita H, et al. TITLE Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production. JOURNAL DNA Res 15:151-61 (2008) /// ENTRY T00700 Complete Genome NAME sbc, S.boydii_CDC3083-94, SHIB3, 344609 DEFINITION Shigella boydii CDC 3083-94 ANNOTATION manual TAXONOMY TAX:344609 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_010658 LENGTH 4615997 PLASMID pBS512_33; Circular SEQUENCE RS:NC_010657 LENGTH 33103 PLASMID pBS512_211; Circular SEQUENCE RS:NC_010660 LENGTH 210919 PLASMID pBS512_2; Circular SEQUENCE RS:NC_010656 LENGTH 2089 PLASMID pBS512_7; Circular SEQUENCE RS:NC_010672 LENGTH 7437 PLASMID pBS512_5; Circular SEQUENCE RS:NC_010659 LENGTH 5114 STATISTICS Number of nucleotides: 4874659 Number of protein genes: 4557 Number of RNA genes: 174 /// ENTRY T00701 Complete Genome NAME krh, K.rhizophila, KOCRD, 378753 DEFINITION Kocuria rhizophila DC2201 ANNOTATION manual TAXONOMY TAX:378753 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Kocuria DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME Circular SEQUENCE RS:NC_010617 LENGTH 2697540 STATISTICS Number of nucleotides: 2697540 Number of protein genes: 2357 Number of RNA genes: 56 REFERENCE PMID:18408034 AUTHORS Takarada H, et al. TITLE Complete genome sequence of the soil actinomycete Kocuria rhizophila. JOURNAL J Bacteriol 190:4139-46 (2008) /// ENTRY T00702 Complete Genome NAME cti, C.taiwanensis, CUPTR, 164546 DEFINITION Cupriavidus taiwanensis ANNOTATION KOALA TAXONOMY TAX:164546 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME 1; Circular SEQUENCE RS:NC_010528 LENGTH 3416911 CHROMOSOME 2; Circular SEQUENCE RS:NC_010530 LENGTH 2502411 PLASMID pRALTA; Circular SEQUENCE RS:NC_010529 LENGTH 557200 STATISTICS Number of nucleotides: 6476522 Number of protein genes: 5896 Number of RNA genes: 89 REFERENCE PMID:18490699 AUTHORS Amadou C, et al. TITLE Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia. JOURNAL Genome Res 18:1472-83 (2008) /// ENTRY T00703 Complete Genome NAME bmc, B.abortus_S19, BRUA1, 430066 DEFINITION Brucella abortus S19 ANNOTATION KOALA TAXONOMY TAX:430066 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB PATRIC CHROMOSOME 1; Circular SEQUENCE RS:NC_010742 LENGTH 2122487 CHROMOSOME 2; Circular SEQUENCE RS:NC_010740 LENGTH 1161449 STATISTICS Number of nucleotides: 3283936 Number of protein genes: 3000 Number of RNA genes: 69 REFERENCE PMID:18478107 AUTHORS Crasta OR, et al. TITLE Genome sequence of Brucella abortus vaccine strain S19 compared to virulent strains yields candidate virulence genes. JOURNAL PLoS ONE 3:e2193 (2008) /// ENTRY T00704 Complete Genome NAME bph, B.phymatum, BURP8, 391038 DEFINITION Burkholderia phymatum STM815 ANNOTATION KOALA TAXONOMY TAX:391038 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_010622 LENGTH 3479187 CHROMOSOME 2; Circular SEQUENCE RS:NC_010623 LENGTH 2697374 PLASMID pBPHY01; Circular SEQUENCE RS:NC_010625 LENGTH 1904893 PLASMID pBPHY02; Circular SEQUENCE RS:NC_010627 LENGTH 595108 STATISTICS Number of nucleotides: 8676562 Number of protein genes: 7496 Number of RNA genes: 80 /// ENTRY T00705 Complete Genome NAME ott, O.tsutsugamushi_Ikeda, ORITI, 334380 DEFINITION Orientia tsutsugamushi Ikeda ANNOTATION KOALA TAXONOMY TAX:334380 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Orientia DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo CHROMOSOME Circular SEQUENCE RS:NC_010793 LENGTH 2008987 STATISTICS Number of nucleotides: 2008987 Number of protein genes: 1967 Number of RNA genes: 38 REFERENCE PMID:18508905 AUTHORS Nakayama K, et al. TITLE The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. JOURNAL DNA Res 15:185-99 (2008) /// ENTRY T00706 Complete Genome NAME trq, Thermotoga_RQ2, THESQ, 126740 DEFINITION Thermotoga sp. RQ2 ANNOTATION KOALA TAXONOMY TAX:126740 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010483 LENGTH 1877693 STATISTICS Number of nucleotides: 1877693 Number of protein genes: 1819 Number of RNA genes: 52 /// ENTRY T00707 Complete Genome NAME blj, B.longum_DJO10A, BIFLD, 205913 DEFINITION Bifidobacterium longum DJO10A ANNOTATION KOALA TAXONOMY TAX:205913 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium DATA_SOURCE RefSeq ORIGINAL_DB U. Minnesota JGI CHROMOSOME Circular SEQUENCE RS:NC_010816 LENGTH 2375792 PLASMID pDOJH10L; Circular SEQUENCE RS:NC_004252 LENGTH 10073 PLASMID pDOJH10S; Circular SEQUENCE RS:NC_004253 LENGTH 3661 STATISTICS Number of nucleotides: 2389526 Number of protein genes: 2002 Number of RNA genes: 71 REFERENCE PMID:18505588 AUTHORS Lee JH, et al. TITLE Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth. JOURNAL BMC Genomics 9:247 (2008) REFERENCE PMID:16391088 (plasmids) AUTHORS Lee JH, O'Sullivan DJ. TITLE Sequence analysis of two cryptic plasmids from Bifidobacterium longum DJO10A and construction of a shuttle cloning vector. JOURNAL Appl Environ Microbiol 72:527-35 (2006) /// ENTRY T00708 Complete Genome NAME glo, G.lovleyi, GEOLS, 398767 DEFINITION Geobacter lovleyi SZ ANNOTATION KOALA TAXONOMY TAX:398767 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010814 LENGTH 3917761 PLASMID pGLOV01; Circular SEQUENCE RS:NC_010815 LENGTH 77113 STATISTICS Number of nucleotides: 3994874 Number of protein genes: 3685 Number of RNA genes: 53 /// ENTRY T00709 Complete Genome NAME cpb, C.phaeobacteroides_BS1, CHLPB, 331678 DEFINITION Chlorobium phaeobacteroides BS1 ANNOTATION KOALA TAXONOMY TAX:331678 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010831 LENGTH 2736403 STATISTICS Number of nucleotides: 2736403 Number of protein genes: 2469 Number of RNA genes: 54 /// ENTRY T00710 Complete Genome NAME abc, A.baumannii_ACICU, ACIBC, 405416 DEFINITION Acinetobacter baumannii ACICU ANNOTATION KOALA TAXONOMY TAX:405416 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter DATA_SOURCE RefSeq ORIGINAL_DB NRC CHROMOSOME Circular SEQUENCE RS:NC_010611 LENGTH 3904116 PLASMID pACICU1; Circular SEQUENCE RS:NC_010605 LENGTH 28279 PLASMID pACICU2; Circular SEQUENCE RS:NC_010606 LENGTH 64366 STATISTICS Number of nucleotides: 3996761 Number of protein genes: 3759 Number of RNA genes: 82 REFERENCE PMID:18411315 AUTHORS Iacono M, et al. TITLE Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group. JOURNAL Antimicrob Agents Chemother 52:2616-25 (2008) /// ENTRY T00711 Complete Genome NAME eta, E.tasmaniensis, 465817 DEFINITION Erwinia tasmaniensis ANNOTATION manual TAXONOMY TAX:465817 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck CHROMOSOME Circular SEQUENCE RS:NC_010694 LENGTH 3883467 PLASMID pET09; Circular SEQUENCE RS:NC_010695 LENGTH 9299 PLASMID pET35; Circular SEQUENCE RS:NC_010696 LENGTH 35494 PLASMID pET45; Circular SEQUENCE RS:NC_010699 LENGTH 44694 PLASMID pET46; Circular SEQUENCE RS:NC_010693 LENGTH 46159 PLASMID pET49; Circular SEQUENCE RS:NC_010697 LENGTH 48751 STATISTICS Number of nucleotides: 4067864 Number of protein genes: 3622 Number of RNA genes: 108 REFERENCE PMID:18462403 AUTHORS Kube M, et al. TITLE The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia. JOURNAL Environ Microbiol 10:2211-22 (2008) /// ENTRY T00712 Complete Genome NAME lbf, L.biflexa_Patoc1_Ames, LEPBA, 355278 DEFINITION Leptospira biflexa serovar Patoc Patoc 1 (Ames) ANNOTATION KOALA TAXONOMY TAX:355278 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira DATA_SOURCE RefSeq ORIGINAL_DB Monash University CHROMOSOME I; Circular SEQUENCE RS:NC_010842 LENGTH 3603977 CHROMOSOME II; Circular SEQUENCE RS:NC_010845 LENGTH 277995 PLASMID p74; Circular SEQUENCE RS:NC_010846 LENGTH 74117 STATISTICS Number of nucleotides: 3956089 Number of protein genes: 3600 Number of RNA genes: 41 REFERENCE PMID:18270594 AUTHORS Picardeau M, et al. TITLE Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis. JOURNAL PLoS One 3:e1607 (2008) /// ENTRY T00713 Complete Genome NAME npu, N.punctiforme, NOSP7, 63737 DEFINITION Nostoc punctiforme PCC 73102 ANNOTATION KOALA TAXONOMY TAX:63737 LINEAGE Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc DATA_SOURCE RefSeq ORIGINAL_DB JGI CyanoBase CYORF CHROMOSOME Circular SEQUENCE RS:NC_010628 LENGTH 8234322 PLASMID pNPUN01; Circular SEQUENCE RS:NC_010631 LENGTH 354564 PLASMID pNPUN02; Circular SEQUENCE RS:NC_010632 LENGTH 254918 PLASMID pNPUN03; Circular SEQUENCE RS:NC_010630 LENGTH 123028 PLASMID pNPUN04; Circular SEQUENCE RS:NC_010633 LENGTH 65940 PLASMID pNPUN05; Circular SEQUENCE RS:NC_010629 LENGTH 26419 STATISTICS Number of nucleotides: 9059191 Number of protein genes: 6689 Number of RNA genes: 104 /// ENTRY T00714 Complete Genome NAME pgn, P.gingivalis_ATCC33277, PORG3, 431947 DEFINITION Porphyromonas gingivalis ATCC 33277 ANNOTATION KOALA TAXONOMY TAX:431947 LINEAGE Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo CHROMOSOME Circular SEQUENCE RS:NC_010729 LENGTH 2354886 STATISTICS Number of nucleotides: 2354886 Number of protein genes: 2090 Number of RNA genes: 65 REFERENCE PMID:18524787 AUTHORS Naito M, et al. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. JOURNAL DNA Res 15:215-25 (2008) /// ENTRY T00715 Complete Genome NAME sul, Sulfurihydrogenibium_YO3AOP1, SULSY, 436114 DEFINITION Sulfurihydrogenibium sp. YO3AOP1 ANNOTATION manual TAXONOMY TAX:436114 LINEAGE Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Sulfurihydrogenibium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010730 LENGTH 1838442 STATISTICS Number of nucleotides: 1838442 Number of protein genes: 1721 Number of RNA genes: 52 /// ENTRY T00716 Complete Genome NAME tpp, T.pallidum_SS14, TREPS, 455434 DEFINITION Treponema pallidum subsp. pallidum SS14 ANNOTATION KOALA TAXONOMY TAX:455434 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema DATA_SOURCE RefSeq ORIGINAL_DB Baylor CHROMOSOME Circular SEQUENCE RS:NC_010741 LENGTH 1139457 STATISTICS Number of nucleotides: 1139457 Number of protein genes: 1028 Number of RNA genes: 51 REFERENCE PMID:18482458 AUTHORS Matejkova P, et al. TITLE Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays. JOURNAL BMC Microbiol 8:76 (2008) /// ENTRY T00717 Complete Genome NAME apa, A.pleuropneumoniae_AP76, ACTP7, 537457 DEFINITION Actinobacillus pleuropneumoniae AP76 (serotype 7) ANNOTATION KOALA TAXONOMY TAX:537457 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld CHROMOSOME Circular SEQUENCE RS:NC_010939 LENGTH 2331981 PLASMID APP7_A; Circular SEQUENCE RS:NC_010942 LENGTH 5685 PLASMID ABB7_B; Circular SEQUENCE RS:NC_010941 LENGTH 4236 PLASMID APP7_C; Circular SEQUENCE RS:NC_010940 LENGTH 3533 STATISTICS Number of nucleotides: 2345435 Number of protein genes: 2142 Number of RNA genes: 78 /// ENTRY T00718 Complete Genome NAME sml, S.maltophilia, STRMK, 522373 DEFINITION Stenotrophomonas maltophilia K279a ANNOTATION manual TAXONOMY TAX:522373 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_010943 LENGTH 4851126 STATISTICS Number of nucleotides: 4851126 Number of protein genes: 4386 REFERENCE PMID:18419807 AUTHORS Crossman LC, et al. TITLE The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants. JOURNAL Genome Biol 9:R74 (2008) /// ENTRY T00719 Complete Genome NAME wpi, W.pipientis, WOLPP, 570417 DEFINITION Wolbachia pipientis, endosymbiont of Culex quinquefasciatus Pel (mosquito) ANNOTATION KOALA TAXONOMY TAX:570417 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Wolbachieae; Wolbachia DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_010981 LENGTH 1482455 STATISTICS Number of nucleotides: 1482455 Number of protein genes: 1275 Number of RNA genes: 37 REFERENCE PMID:18550617 AUTHORS Klasson L, et al. TITLE Genome evolution of Wolbachia strain wPip from the Culex pipiens group. JOURNAL Mol Biol Evol 25:1877-87 (2008) /// ENTRY T00720 Complete Genome NAME rec, R.etli_CIAT652, RHIE6, 491916 DEFINITION Rhizobium etli CIAT 652 ANNOTATION KOALA TAXONOMY TAX:491916 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium DATA_SOURCE RefSeq ORIGINAL_DB UNAM Mexico CHROMOSOME Circular SEQUENCE RS:NC_010994 LENGTH 4513324 PLASMID pA; Circular SEQUENCE RS:NC_010998 LENGTH 414090 PLASMID pB; Circular SEQUENCE RS:NC_010996 LENGTH 429111 PLASMID pC; Circular SEQUENCE RS:NC_010997 LENGTH 1091523 STATISTICS Number of nucleotides: 6448048 Number of protein genes: 6056 Number of RNA genes: 60 /// ENTRY T00721 Complete Genome NAME cja, C.japonicus, CELJU, 498211 DEFINITION Cellvibrio japonicus Ueda107 ANNOTATION manual TAXONOMY TAX:498211 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_010995 LENGTH 4576573 STATISTICS Number of nucleotides: 4576573 Number of protein genes: 3754 Number of RNA genes: 58 REFERENCE PMID:18556790 AUTHORS Deboy RT, et al. TITLE Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus. JOURNAL J Bacteriol 190:5455-63 (2008) /// ENTRY T00722 Complete Genome NAME rpt, R.palustris_TIE-1, RHOPT, 395960 DEFINITION Rhodopseudomonas palustris TIE-1 ANNOTATION KOALA TAXONOMY TAX:395960 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011004 LENGTH 5744041 STATISTICS Number of nucleotides: 5744041 Number of protein genes: 5246 Number of RNA genes: 62 /// ENTRY T00723 Complete Genome NAME lcb, L.casei_BL23, LACCB, 543734 DEFINITION Lactobacillus casei BL23 ANNOTATION KOALA TAXONOMY TAX:543734 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB INRA CHROMOSOME Circular SEQUENCE RS:NC_010999 LENGTH 3079196 STATISTICS Number of nucleotides: 3079196 Number of protein genes: 3022 /// ENTRY T00724 Complete Genome NAME mat, M.arthritidis, MYCA5, 243272 DEFINITION Mycoplasma arthritidis 158L3-1 ANNOTATION KOALA TAXONOMY TAX:243272 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB Alabama JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_011025 LENGTH 820453 STATISTICS Number of nucleotides: 820453 Number of protein genes: 631 Number of RNA genes: 36 REFERENCE PMID:18573899 AUTHORS Dybvig K, et al. TITLE Genome of Mycoplasma arthritidis. JOURNAL Infect Immun 76:4000-8 (2008) /// ENTRY T00725 Complete Genome NAME cpc, C.parvum_NCIB8327, CHLP8, 517417 DEFINITION Chlorobaculum parvum NCIB 8327 ANNOTATION KOALA TAXONOMY TAX:517417 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011027 LENGTH 2289249 STATISTICS Number of nucleotides: 2289249 Number of protein genes: 2043 Number of RNA genes: 57 /// ENTRY T00726 Complete Genome NAME cts, C.thalassium, CHLT3, 517418 DEFINITION Chloroherpeton thalassium ATCC 35110 ANNOTATION KOALA TAXONOMY TAX:517418 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011026 LENGTH 3293456 STATISTICS Number of nucleotides: 3293456 Number of protein genes: 2710 Number of RNA genes: 49 /// ENTRY T00727 Complete Genome NAME min, M.infernorum, METI4, 481448 DEFINITION Methylacidiphilum infernorum V4 ANNOTATION KOALA TAXONOMY TAX:481448 LINEAGE Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilum DATA_SOURCE RefSeq ORIGINAL_DB Hawaii CHROMOSOME Circular SEQUENCE RS:NC_010794 LENGTH 2287145 STATISTICS Number of nucleotides: 2287145 Number of protein genes: 2472 Number of RNA genes: 52 REFERENCE PMID:18593465 AUTHORS Hou S, et al. TITLE Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia. JOURNAL Biol Direct 3:26 (2008) /// ENTRY T00728 Complete Genome NAME ngk, N.gonorrhoeae_NCCP11945, NEIG2, 521006 DEFINITION Neisseria gonorrhoeae NCCP11945 ANNOTATION KOALA TAXONOMY TAX:521006 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria DATA_SOURCE RefSeq ORIGINAL_DB KNIH CHROMOSOME Circular SEQUENCE RS:NC_011035 LENGTH 2232025 PLASMID pNGK; Circular SEQUENCE RS:NC_011034 LENGTH 4153 STATISTICS Number of nucleotides: 2236178 Number of protein genes: 2674 Number of RNA genes: 67 REFERENCE PMID:18586945 AUTHORS Chung GT, et al. TITLE Complete genome sequence of Neisseria gonorrhoeae NCCP11945. JOURNAL J Bacteriol 190:6035-6 (2008) /// ENTRY T00729 Complete Genome NAME pml, Phytoplasma_mali, APPPP, 37692 DEFINITION Candidatus Phytoplasma mali ANNOTATION KOALA TAXONOMY TAX:37692 LINEAGE Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma; 16SrX (Apple proliferation group) DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck CHROMOSOME SEQUENCE RS:NC_011047 LENGTH 601943 STATISTICS Number of nucleotides: 601943 Number of protein genes: 479 Number of RNA genes: 39 REFERENCE PMID:18582369 AUTHORS Kube M, et al. TITLE The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'. JOURNAL BMC Genomics 9:306 (2008) /// ENTRY T00730 Complete Genome NAME aas, A.asiaticus, AMOA5, 452471 DEFINITION Candidatus Amoebophilus asiaticus 5a2 ANNOTATION KOALA TAXONOMY TAX:452471 LINEAGE Bacteria; Bacteroidetes; Candidatus Amoebophilus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010830 LENGTH 1884364 STATISTICS Number of nucleotides: 1884364 Number of protein genes: 1283 Number of RNA genes: 40 REFERENCE PMID:20023027 AUTHORS Schmitz-Esser S, et al. TITLE The genome of the amoeba symbiont "Candidatus Amoebophilus asiaticus" reveals common mechanisms for host cell interaction among amoeba-associated bacteria. JOURNAL J Bacteriol 192:1045-57 (2010) /// ENTRY T00731 Complete Genome NAME pph, P.phaeoclathratiforme, PELPB, 324925 DEFINITION Pelodictyon phaeoclathratiforme BU-1 ANNOTATION KOALA TAXONOMY TAX:324925 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011060 LENGTH 3018238 STATISTICS Number of nucleotides: 3018238 Number of protein genes: 2707 Number of RNA genes: 59 /// ENTRY T00732 Complete Genome NAME paa, P.aestuarii, PROA2, 290512 DEFINITION Prosthecochloris aestuarii DSM 271 ANNOTATION manual TAXONOMY TAX:290512 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Prosthecochloris DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011059 LENGTH 2512923 PLASMID pPAES01; Circular SEQUENCE RS:NC_011061 LENGTH 66772 STATISTICS Number of nucleotides: 2579695 Number of protein genes: 2327 Number of RNA genes: 50 /// ENTRY T00733 Complete Genome NAME smt, S.maltophilia_R551-3, STRM5, 391008 DEFINITION Stenotrophomonas maltophilia R551-3 ANNOTATION KOALA TAXONOMY TAX:391008 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011071 LENGTH 4573969 STATISTICS Number of nucleotides: 4573969 Number of protein genes: 4039 Number of RNA genes: 89 /// ENTRY T00734 Complete Genome NAME spx, S.pneumoniae_G54, STRP4, 512566 DEFINITION Streptococcus pneumoniae G54 (serotype 19F) ANNOTATION KOALA TAXONOMY TAX:512566 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME SEQUENCE RS:NC_011072 LENGTH 2078953 STATISTICS Number of nucleotides: 2078953 Number of protein genes: 2115 Number of RNA genes: 71 REFERENCE PMID:11442348 AUTHORS Dopazo J, et al. TITLE Annotated draft genomic sequence from a Streptococcus pneumoniae type 19F clinical isolate. JOURNAL Microb Drug Resist 7:99-125 (2001) /// ENTRY T00735 Complete Genome NAME lrf, L.reuteri_K, LACRF, 557433 DEFINITION Lactobacillus reuteri JCM 1112 ANNOTATION KOALA TAXONOMY TAX:557433 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB Kitasato CHROMOSOME Circular SEQUENCE RS:NC_010609 LENGTH 2039414 STATISTICS Number of nucleotides: 2039414 Number of protein genes: 1820 Number of RNA genes: 81 REFERENCE PMID:18487258 AUTHORS Morita H, et al. TITLE Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production. JOURNAL DNA Res 15:151-61 (2008) /// ENTRY T00736 Complete Genome NAME amu, A.muciniphila, AKKM8, 349741 DEFINITION Akkermansia muciniphila ATCC BAA-835 ANNOTATION manual TAXONOMY TAX:349741 LINEAGE Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobiaceae; Akkermansia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010655 LENGTH 2664102 STATISTICS Number of nucleotides: 2664102 Number of protein genes: 2138 Number of RNA genes: 63 /// ENTRY T00737 Complete Genome NAME btu, B.turicatae, BORT9, 314724 DEFINITION Borrelia turicatae 91E135 ANNOTATION KOALA TAXONOMY TAX:314724 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML CHROMOSOME SEQUENCE RS:NC_008710 LENGTH 917330 STATISTICS Number of nucleotides: 917330 Number of protein genes: 818 Number of RNA genes: 34 /// ENTRY T00738 Complete Genome NAME seh, S.enterica_Heidelberg, SALHS, 454169 DEFINITION Salmonella enterica subsp. enterica serovar Heidelberg ANNOTATION KOALA TAXONOMY TAX:454169 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Heidelberg DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011083 LENGTH 4888768 PLASMID pSL476_91; Circular SEQUENCE RS:NC_011081 LENGTH 91374 PLASMID pSL476_3; Circular SEQUENCE RS:NC_011082 LENGTH 3373 STATISTICS Number of nucleotides: 4983515 Number of protein genes: 4780 Number of RNA genes: 154 /// ENTRY T00739 Complete Genome NAME see, S.enterica_Newport, SALNS, 423368 DEFINITION Salmonella enterica subsp. enterica serovar Newport SL254 ANNOTATION KOALA TAXONOMY TAX:423368 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Newport DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011080 LENGTH 4827641 PLASMID pSL254_3; Circular SEQUENCE RS:NC_011079 LENGTH 3605 PLASMID pSN254; Circular SEQUENCE RS:NC_009140 LENGTH 176473 STATISTICS Number of nucleotides: 5007719 Number of protein genes: 4805 Number of RNA genes: 154 /// ENTRY T00740 Complete Genome NAME bmj, B.multivorans_T, BURM1, 395019 DEFINITION Burkholderia multivorans ATCC 17616 (Tohoku) ANNOTATION KOALA TAXONOMY TAX:395019 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB Tohoku U CHROMOSOME 1; Circular SEQUENCE RS:NC_010804 LENGTH 3448421 CHROMOSOME 2; Circular SEQUENCE RS:NC_010805 LENGTH 2473162 CHROMOSOME 3; Circular SEQUENCE RS:NC_010801 LENGTH 919805 PLASMID pTGL1; Circular SEQUENCE RS:NC_010802 LENGTH 167422 STATISTICS Number of nucleotides: 7008810 Number of protein genes: 6112 Number of RNA genes: 81 /// ENTRY T00741 Complete Genome NAME emi, E.minutum, ELUMP, 445932 DEFINITION Elusimicrobium minutum Pei191 ANNOTATION manual TAXONOMY TAX:445932 LINEAGE Bacteria; Elusimicrobia; Elusimicrobia (class); Elusimicrobiales; Elusimicrobiaceae; Elusimicrobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010644 LENGTH 1643562 STATISTICS Number of nucleotides: 1643562 Number of protein genes: 1529 Number of RNA genes: 50 REFERENCE PMID:19270133 AUTHORS Herlemann DP, et al. TITLE Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1). JOURNAL Appl Environ Microbiol 75:2841-9 (2009) /// ENTRY T00742 Complete Genome NAME hps, H.pylori_Shi470, HELPS, 512562 DEFINITION Helicobacter pylori Shi470 ANNOTATION KOALA TAXONOMY TAX:512562 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq ORIGINAL_DB Washington U CHROMOSOME Circular SEQUENCE RS:NC_010698 LENGTH 1608548 STATISTICS Number of nucleotides: 1608548 Number of protein genes: 1568 Number of RNA genes: 42 /// ENTRY T00743 Complete Genome NAME sew, S.enterica_Schwarzengrund, SALSV, 439843 DEFINITION Salmonella enterica subsp. enterica serovar Schwarzengrund CVM19633 ANNOTATION KOALA TAXONOMY TAX:439843 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011094 LENGTH 4709075 PLASMID pCVM19633_110; Circular SEQUENCE RS:NC_011092 LENGTH 110227 PLASMID pCVM19633_4; Circular SEQUENCE RS:NC_011093 LENGTH 4585 STATISTICS Number of nucleotides: 4823887 Number of protein genes: 4627 Number of RNA genes: 147 /// ENTRY T00744 Complete Genome NAME ypb, Y.pseudotuberculosis_PB1, YERPB, 502801 DEFINITION Yersinia pseudotuberculosis PB1/+ ANNOTATION KOALA TAXONOMY TAX:502801 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010634 LENGTH 4695619 PLASMID pYPTS01; Circular SEQUENCE RS:NC_010635 LENGTH 69812 STATISTICS Number of nucleotides: 4765431 Number of protein genes: 4237 Number of RNA genes: 97 /// ENTRY T00745 Complete Genome NAME hya, Hydrogenobaculum_Y04AAS1, HYDS0, 380749 DEFINITION Hydrogenobaculum sp. Y04AAS1 ANNOTATION manual TAXONOMY TAX:380749 LINEAGE Bacteria; Aquificae; Aquificales; Aquificaceae; Hydrogenobaculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011126 LENGTH 1559514 STATISTICS Number of nucleotides: 1559514 Number of protein genes: 1629 Number of RNA genes: 53 /// ENTRY T00746 Complete Genome NAME sez, S.equi, STREM, 552526 DEFINITION Streptococcus equi subsp. zooepidemicus MGCS10565 ANNOTATION KOALA TAXONOMY TAX:552526 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Methodist CHROMOSOME Circular SEQUENCE RS:NC_011134 LENGTH 2024171 STATISTICS Number of nucleotides: 2024171 Number of protein genes: 1893 Number of RNA genes: 72 REFERENCE PMID:18716664 AUTHORS Beres SB, et al. TITLE Genome sequence of a Lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease. JOURNAL PLoS ONE 3:e3026 (2008) /// ENTRY T00747 Complete Genome NAME amc, A.macleodii, ALTMD, 314275 DEFINITION Alteromonas macleodii Deep ecotype ANNOTATION KOALA TAXONOMY TAX:314275 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas DATA_SOURCE RefSeq ORIGINAL_DB U Miguel Hernandez CHROMOSOME Circular SEQUENCE RS:NC_011138 LENGTH 4412282 STATISTICS Number of nucleotides: 4412282 Number of protein genes: 4072 Number of RNA genes: 56 REFERENCE PMID:18670397 AUTHORS Ivars-Martinez E, et al. TITLE Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. JOURNAL ISME J 2:1194-212 (2008) /// ENTRY T00748 Complete Genome NAME ank, Anaeromyxobacter_K, ANASK, 447217 DEFINITION Anaeromyxobacter sp. K ANNOTATION KOALA TAXONOMY TAX:447217 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Anaeromyxobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011145 LENGTH 5061632 STATISTICS Number of nucleotides: 5061632 Number of protein genes: 4457 Number of RNA genes: 58 /// ENTRY T00749 Complete Genome NAME gbm, G.bemidjiensis, GEOBB, 404380 DEFINITION Geobacter bemidjiensis Bem ANNOTATION KOALA TAXONOMY TAX:404380 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011146 LENGTH 4615150 STATISTICS Number of nucleotides: 4615150 Number of protein genes: 4018 Number of RNA genes: 74 /// ENTRY T00750 Complete Genome NAME pzu, P.zucineum, PHEZH, 450851 DEFINITION Phenylobacterium zucineum HLK1 ANNOTATION KOALA TAXONOMY TAX:450851 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium DATA_SOURCE RefSeq ORIGINAL_DB Zhejiang CHROMOSOME Circular SEQUENCE RS:NC_011144 LENGTH 3996255 PLASMID unnamed; Circular SEQUENCE RS:NC_011143 LENGTH 382976 STATISTICS Number of nucleotides: 4379231 Number of protein genes: 3854 Number of RNA genes: 45 REFERENCE PMID:18700039 AUTHORS Luo Y, et al. TITLE Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562. JOURNAL BMC Genomics 9:386 (2008) /// ENTRY T00751 Complete Genome NAME sea, S.enterica_Agona, SALA4, 454166 DEFINITION Salmonella enterica subsp. enterica serovar Agona SL483 ANNOTATION KOALA TAXONOMY TAX:454166 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Agona DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011149 LENGTH 4798660 PLASMID unnamed; Circular SEQUENCE RS:NC_011148 LENGTH 37978 STATISTICS Number of nucleotides: 4836638 Number of protein genes: 4615 Number of RNA genes: 162 /// ENTRY T00752 Complete Genome NAME pal, Phytoplasma_australiense, PHYAS, 59748 DEFINITION Candidatus Phytoplasma australiense ANNOTATION KOALA TAXONOMY TAX:59748 LINEAGE Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma; 16SrXII (Stolbur group) DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck CHROMOSOME Circular SEQUENCE RS:NC_010544 LENGTH 879959 STATISTICS Number of nucleotides: 879959 Number of protein genes: 684 Number of RNA genes: 43 REFERENCE PMID:18359806 AUTHORS Tran-Nguyen LT, et al. TITLE Comparative genome analysis of "Candidatus Phytoplasma australiense" (subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" Strains OY-M and AY-WB. JOURNAL J Bacteriol 190:3979-91 (2008) /// ENTRY T00753 Complete Genome NAME pmr, P.mirabilis, PROMH, 529507 DEFINITION Proteus mirabilis HI4320 ANNOTATION manual TAXONOMY TAX:529507 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Proteus DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_010554 LENGTH 4063606 PLASMID pHI4320; Circular SEQUENCE RS:NC_010555 LENGTH 36289 STATISTICS Number of nucleotides: 4099895 Number of protein genes: 3662 Number of RNA genes: 122 REFERENCE PMID:18375554 AUTHORS Pearson MM, et al. TITLE Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility. JOURNAL J Bacteriol 190:4027-37 (2008) /// ENTRY T00754 Complete Genome NAME vfm, V.fischeri_MJ11, VIBFM, 388396 DEFINITION Vibrio fischeri MJ11 ANNOTATION KOALA TAXONOMY TAX:388396 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME I; Circular SEQUENCE RS:NC_011184 LENGTH 2905029 CHROMOSOME II; Circular SEQUENCE RS:NC_011186 LENGTH 1418848 PLASMID pMJ100; Circular SEQUENCE RS:NC_011185 LENGTH 179459 STATISTICS Number of nucleotides: 4503336 Number of protein genes: 4039 Number of RNA genes: 136 REFERENCE PMID:19182778 AUTHORS Mandel MJ, et al. TITLE A single regulatory gene is sufficient to alter bacterial host range. JOURNAL Nature 458:215-8 (2009) /// ENTRY T00755 Complete Genome NAME rsd, Rs-D17, UNCTG, 471821 DEFINITION Uncultured Termite group 1 bacterium phylotype Rs-D17 ANNOTATION KOALA TAXONOMY TAX:471821 LINEAGE Bacteria; Elusimicrobia; environmental samples DATA_SOURCE RefSeq ORIGINAL_DB RIKEN CHROMOSOME Circular SEQUENCE RS:NS_000191 LENGTH 1125857 PLASMID pTGRD1; Circular SEQUENCE RS:NS_000192 LENGTH 11650 PLASMID pTGRD2; Circular SEQUENCE RS:NS_000193 LENGTH 5701 PLASMID pTGRD3; Circular SEQUENCE RS:NS_000194 LENGTH 5362 STATISTICS Number of nucleotides: 1148570 Number of protein genes: 776 Number of RNA genes: 48 REFERENCE PMID:18391199 AUTHORS Hongoh Y, et al. TITLE Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell. JOURNAL Proc Natl Acad Sci U S A 105:5555-60 (2008) /// ENTRY T00756 Complete Genome NAME sek, S.enterica_Paratyphi_AKU12601, SALPK, 554290 DEFINITION Salmonella enterica subsp. enterica serovar Paratyphi A AKU_12601 ANNOTATION KOALA TAXONOMY TAX:554290 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_011147 LENGTH 4581797 STATISTICS Number of nucleotides: 4581797 Number of protein genes: 4076 Number of RNA genes: 131 /// ENTRY T00757 Complete Genome NAME sed, S.enterica_Dublin, SALDC, 439851 DEFINITION Salmonella enterica subsp. enterica serovar Dublin CT_02021853 ANNOTATION KOALA TAXONOMY TAX:439851 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Dublin DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011205 LENGTH 4842908 PLASMID pCT02021853_74; Circular SEQUENCE RS:NC_011204 LENGTH 74551 STATISTICS Number of nucleotides: 4917459 Number of protein genes: 4617 Number of RNA genes: 151 /// ENTRY T00758 Complete Genome NAME afe, A.ferrooxidans, ACIF5, 380394 DEFINITION Acidithiobacillus ferrooxidans ATCC 53993 ANNOTATION KOALA TAXONOMY TAX:380394 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011206 LENGTH 2885038 STATISTICS Number of nucleotides: 2885038 Number of protein genes: 2826 Number of RNA genes: 56 /// ENTRY T00759 Complete Genome NAME xca, X.campestris_B100, XANCB, 509169 DEFINITION Xanthomonas campestris pv. campestris B100 ANNOTATION KOALA TAXONOMY TAX:509169 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld University CHROMOSOME Circular SEQUENCE RS:NC_010688 LENGTH 5079002 STATISTICS Number of nucleotides: 5079002 Number of protein genes: 4466 Number of RNA genes: 62 REFERENCE PMID:18304669 AUTHORS Vorholter FJ, et al. TITLE The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. JOURNAL J Biotechnol 134:33-45 (2008) /// ENTRY T00760 Complete Genome NAME mpo, M.populi, METPB, 441620 DEFINITION Methylobacterium populi BJ001 ANNOTATION KOALA TAXONOMY TAX:441620 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010725 LENGTH 5800441 PLASMID pMPOP01; Circular SEQUENCE RS:NC_010727 LENGTH 25164 PLASMID pMPOP02; Circular SEQUENCE RS:NC_010721 LENGTH 23392 STATISTICS Number of nucleotides: 5848997 Number of protein genes: 5365 Number of RNA genes: 76 /// ENTRY T00761 Complete Genome NAME nth, N.thermophilus, NATTJ, 457570 DEFINITION Natranaerobius thermophilus JW/NM-WN-LF ANNOTATION KOALA TAXONOMY TAX:457570 LINEAGE Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010718 LENGTH 3165557 PLASMID pNTHE01; Circular SEQUENCE RS:NC_010715 LENGTH 17207 PLASMID pNTHE02; Circular SEQUENCE RS:NC_010724 LENGTH 8689 STATISTICS Number of nucleotides: 3191453 Number of protein genes: 2906 Number of RNA genes: 67 /// ENTRY T00762 Complete Genome NAME rpi, R.pickettii, RALPJ, 402626 DEFINITION Ralstonia pickettii 12J ANNOTATION manual TAXONOMY TAX:402626 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_010682 LENGTH 3942557 CHROMOSOME 2; Circular SEQUENCE RS:NC_010678 LENGTH 1302238 PLASMID pRPIC01; Circular SEQUENCE RS:NC_010683 LENGTH 80934 STATISTICS Number of nucleotides: 5325729 Number of protein genes: 4952 Number of RNA genes: 68 /// ENTRY T00763 Complete Genome NAME xop, X.oryzae_PXO99A, XANOP, 360094 DEFINITION Xanthomonas oryzae pv. oryzae PXO99A ANNOTATION KOALA TAXONOMY TAX:360094 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas DATA_SOURCE RefSeq ORIGINAL_DB U.Maryland CHROMOSOME Circular SEQUENCE RS:NC_010717 LENGTH 5240075 STATISTICS Number of nucleotides: 5240075 Number of protein genes: 4988 Number of RNA genes: 60 REFERENCE PMID:18452608 AUTHORS Salzberg SL, et al. TITLE Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. JOURNAL BMC Genomics 9:204 (2008) /// ENTRY T00764 Complete Genome NAME bhr, B.hermsii, BORHD, 314723 DEFINITION Borrelia hermsii DAH ANNOTATION KOALA TAXONOMY TAX:314723 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML CHROMOSOME SEQUENCE RS:NC_010673 LENGTH 922307 STATISTICS Number of nucleotides: 922307 Number of protein genes: 819 Number of RNA genes: 34 /// ENTRY T00765 Complete Genome NAME bpy, B.phytofirmans, BURPP, 398527 DEFINITION Burkholderia phytofirmans PsJN ANNOTATION KOALA TAXONOMY TAX:398527 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_010681 LENGTH 4467537 CHROMOSOME 2; Circular SEQUENCE RS:NC_010676 LENGTH 3625999 PLASMID pBPHYT01; Circular SEQUENCE RS:NC_010679 LENGTH 121122 STATISTICS Number of nucleotides: 8214658 Number of protein genes: 7241 Number of RNA genes: 82 /// ENTRY T00766 Complete Genome NAME cli, C.limicola, CHLL2, 290315 DEFINITION Chlorobium limicola DSM 245 ANNOTATION KOALA TAXONOMY TAX:290315 LINEAGE Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_010803 LENGTH 2763181 STATISTICS Number of nucleotides: 2763181 Number of protein genes: 2434 Number of RNA genes: 54 /// ENTRY T00767 Complete Genome NAME cbt, C.botulinum_E3, CLOBA, 508767 DEFINITION Clostridium botulinum E3 str. Alaska E43 ANNOTATION KOALA TAXONOMY TAX:508767 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB LANL CHROMOSOME Circular SEQUENCE RS:NC_010723 LENGTH 3659644 STATISTICS Number of nucleotides: 3659644 Number of protein genes: 3257 Number of RNA genes: 117 /// ENTRY T00768 Complete Genome NAME bdu, B.duttonii, BORDL, 412419 DEFINITION Borrelia duttonii Ly ANNOTATION KOALA TAXONOMY TAX:412419 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia DATA_SOURCE RefSeq ORIGINAL_DB CNRS Marseille CHROMOSOME SEQUENCE RS:NC_011229 LENGTH 931674 PLASMID pl11 SEQUENCE RS:NC_011224 LENGTH 11226 PLASMID pl15 SEQUENCE RS:NC_011226 LENGTH 15049 PLASMID pl23 SEQUENCE RS:NC_011257 LENGTH 23303 PLASMID pl23b SEQUENCE RS:NC_011259 LENGTH 23036 PLASMID pl26 SEQUENCE RS:NC_011261 LENGTH 26917 PLASMID pl27; Circular SEQUENCE RS:NC_011265 LENGTH 27476 PLASMID pl28 SEQUENCE RS:NC_011245 LENGTH 28343 PLASMID pl31 SEQUENCE RS:NC_011262 LENGTH 31021 PLASMID pl32 SEQUENCE RS:NC_011264 LENGTH 31663 PLASMID pl35 SEQUENCE RS:NC_011248 LENGTH 35286 PLASMID pl36 SEQUENCE RS:NC_011249 LENGTH 35831 PLASMID pl40 SEQUENCE RS:NC_011250 LENGTH 40353 PLASMID pl41 SEQUENCE RS:NC_011251 LENGTH 41259 PLASMID pl42 SEQUENCE RS:NC_011254 LENGTH 42153 PLASMID pl70 SEQUENCE RS:NC_011256 LENGTH 66407 PLASMID pl165 SEQUENCE RS:NC_011247 LENGTH 163884 STATISTICS Number of nucleotides: 1574881 Number of protein genes: 1305 Number of RNA genes: 35 REFERENCE PMID:18787695 AUTHORS Lescot M, et al. TITLE The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. JOURNAL PLoS Genet 4:e1000185 (2008) /// ENTRY T00769 Complete Genome NAME bre, B.recurrentis, BORRA, 412418 DEFINITION Borrelia recurrentis A1 ANNOTATION KOALA TAXONOMY TAX:412418 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia DATA_SOURCE RefSeq ORIGINAL_DB CNRS Marseille CHROMOSOME SEQUENCE RS:NC_011244 LENGTH 930981 PLASMID pl6 SEQUENCE RS:NC_011263 LENGTH 6131 PLASMID pl23 SEQUENCE RS:NC_011252 LENGTH 22945 PLASMID pl33 SEQUENCE RS:NC_011253 LENGTH 33213 PLASMID pl35 SEQUENCE RS:NC_011255 LENGTH 35315 PLASMID pl37 SEQUENCE RS:NC_011258 LENGTH 36869 PLASMID pl53 SEQUENCE RS:NC_011260 LENGTH 52772 PLASMID pl124 SEQUENCE RS:NC_011246 LENGTH 123937 STATISTICS Number of nucleotides: 1242163 Number of protein genes: 990 Number of RNA genes: 35 REFERENCE PMID:18787695 AUTHORS Lescot M, et al. TITLE The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. JOURNAL PLoS Genet 4:e1000185 (2008) /// ENTRY T00770 Complete Genome NAME seg, S.enterica_Gallinarum, SALG2, 550538 DEFINITION Salmonella enterica subsp. enterica serovar Gallinarum 287/91 ANNOTATION KOALA TAXONOMY TAX:550538 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Gallinarum DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_011274 LENGTH 4658697 STATISTICS Number of nucleotides: 4658697 Number of protein genes: 3965 Number of RNA genes: 75 REFERENCE PMID:18583645 AUTHORS Thomson NR, et al. TITLE Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. JOURNAL Genome Res 18:1624-37 (2008) /// ENTRY T00771 Complete Genome NAME bcj, B.cenocepacia_J2315, BURCJ, 216591 DEFINITION Burkholderia cenocepacia J2315 ANNOTATION KOALA TAXONOMY TAX:216591 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME 1; Circular SEQUENCE RS:NC_011000 LENGTH 3870082 CHROMOSOME 2; Circular SEQUENCE RS:NC_011001 LENGTH 3217062 CHROMOSOME 3; Circular SEQUENCE RS:NC_011002 LENGTH 875977 PLASMID pBCJ2315; Circular SEQUENCE RS:NC_011003 LENGTH 92661 STATISTICS Number of nucleotides: 8055782 Number of protein genes: 7116 Number of RNA genes: 94 /// ENTRY T00772 Complete Genome NAME kpe, K.pneumoniae_342, KLEP3, 507522 DEFINITION Klebsiella pneumoniae 342 ANNOTATION manual TAXONOMY TAX:507522 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_011283 LENGTH 5641239 PLASMID pKP187; Circular SEQUENCE RS:NC_011282 LENGTH 187922 PLASMID pKP91; Circular SEQUENCE RS:NC_011281 LENGTH 91096 STATISTICS Number of nucleotides: 5920257 Number of protein genes: 5768 Number of RNA genes: 113 REFERENCE PMID:18654632 AUTHORS Fouts DE, et al. TITLE Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice. JOURNAL PLoS Genet 4:e1000141 (2008) /// ENTRY T00773 Complete Genome NAME cpo, C.proteolyticus, COPPD, 309798 DEFINITION Coprothermobacter proteolyticus DSM 5265 ANNOTATION KOALA TAXONOMY TAX:309798 LINEAGE Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermodesulfobiaceae; Coprothermobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011295 LENGTH 1424912 STATISTICS Number of nucleotides: 1424912 Number of protein genes: 1482 Number of RNA genes: 56 /// ENTRY T00774 Complete Genome NAME dth, D.thermophilum, DICT6, 309799 DEFINITION Dictyoglomus thermophilum H-6-12 ANNOTATION manual TAXONOMY TAX:309799 LINEAGE Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011297 LENGTH 1959987 STATISTICS Number of nucleotides: 1959987 Number of protein genes: 1912 Number of RNA genes: 55 /// ENTRY T00775 Complete Genome NAME tye, T.yellowstonii, THEYD, 289376 DEFINITION Thermodesulfovibrio yellowstonii DSM 11347 ANNOTATION KOALA TAXONOMY TAX:289376 LINEAGE Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011296 LENGTH 2003803 STATISTICS Number of nucleotides: 2003803 Number of protein genes: 2033 Number of RNA genes: 54 /// ENTRY T00776 Complete Genome NAME set, S.enterica_Enteritidis, SALEP, 550537 DEFINITION Salmonella enterica subsp. enterica serovar Enteritidis P125109 ANNOTATION KOALA TAXONOMY TAX:550537 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Enteritidis DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_011294 LENGTH 4685848 STATISTICS Number of nucleotides: 4685848 Number of protein genes: 4206 Number of RNA genes: 106 REFERENCE PMID:18583645 AUTHORS Thomson NR, et al. TITLE Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. JOURNAL Genome Res 18:1624-37 (2008) /// ENTRY T00777 Complete Genome NAME hpg, H.pylori_G27, HELPG, 563041 DEFINITION Helicobacter pylori G27 ANNOTATION KOALA TAXONOMY TAX:563041 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq ORIGINAL_DB FHCRC CHROMOSOME Circular SEQUENCE RS:NC_011333 LENGTH 1652982 PLASMID pHPG27; Circular SEQUENCE RS:NC_011334 LENGTH 10031 STATISTICS Number of nucleotides: 1663013 Number of protein genes: 1504 Number of RNA genes: 43 REFERENCE PMID:18952803 AUTHORS Baltrus DA, et al. TITLE The complete genome sequence of Helicobacter pylori strain G27. JOURNAL J Bacteriol 191:447-8 (2009) /// ENTRY T00778 Complete Genome NAME ecf, E.coli_O157_EC4115, ECO5E, 444450 DEFINITION Escherichia coli O157:H7 EC4115 (EHEC) ANNOTATION manual TAXONOMY TAX:444450 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB JCVI DISEASE Hemorrhagic colitis CHROMOSOME Circular SEQUENCE RS:NC_011353 LENGTH 5572075 PLASMID pEC4115; Circular SEQUENCE RS:NC_011351 LENGTH 37452 PLASMID pO157; Circular SEQUENCE RS:NC_011350 LENGTH 94644 STATISTICS Number of nucleotides: 5704171 Number of protein genes: 5477 Number of RNA genes: 187 /// ENTRY T00779 Complete Genome NAME rlt, R.leguminosarum_trifolii, RHILT, 395492 DEFINITION Rhizobium leguminosarum bv. trifolii WSM2304 ANNOTATION KOALA TAXONOMY TAX:395492 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011369 LENGTH 4537948 PLASMID pRLG201; Circular SEQUENCE RS:NC_011368 LENGTH 1266105 PLASMID pRLG202; Circular SEQUENCE RS:NC_011366 LENGTH 501946 PLASMID pRLG203; Circular SEQUENCE RS:NC_011370 LENGTH 308747 PLASMID pRLG204; Circular SEQUENCE RS:NC_011371 LENGTH 257956 STATISTICS Number of nucleotides: 6872702 Number of protein genes: 6415 Number of RNA genes: 65 /// ENTRY T00780 Complete Genome NAME soz, S.pyogenes_NZ131, STRPZ, 471876 DEFINITION Streptococcus pyogenes NZ131 (serotype M49) ANNOTATION KOALA TAXONOMY TAX:471876 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Oklahoma CHROMOSOME Circular SEQUENCE RS:NC_011375 LENGTH 1815785 STATISTICS Number of nucleotides: 1815785 Number of protein genes: 1700 Number of RNA genes: 85 REFERENCE PMID:18820018 AUTHORS McShan WM, et al. TITLE Genome sequence of a nephritogenic and highly transformable M49 strain of Streptococcus pyogenes. JOURNAL J Bacteriol 190:7773-85 (2008) /// ENTRY T00781 Complete Genome NAME uue, U.urealyticum_10, UREU1, 565575 DEFINITION Ureaplasma urealyticum serovar 10 ATCC 33699 ANNOTATION KOALA TAXONOMY TAX:565575 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Ureaplasma DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011374 LENGTH 874478 STATISTICS Number of nucleotides: 874478 Number of protein genes: 646 Number of RNA genes: 35 /// ENTRY T00782 Complete Genome NAME vsa, A.salmonicida_LFI1238, ALISL, 316275 DEFINITION Aliivibrio salmonicida LFI1238 ANNOTATION KOALA TAXONOMY TAX:316275 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio DATA_SOURCE RefSeq ORIGINAL_DB U Tromso CHROMOSOME 1; Circular SEQUENCE RS:NC_011312 LENGTH 3325165 CHROMOSOME 2; Circular SEQUENCE RS:NC_011313 LENGTH 1206461 PLASMID pVSAL320; Circular SEQUENCE RS:NC_011314 LENGTH 30807 PLASMID pVSAL54; Circular SEQUENCE RS:NC_011315 LENGTH 5360 PLASMID pVSAL43; Circular SEQUENCE RS:NC_011316 LENGTH 4327 PLASMID pVSAL840; Circular SEQUENCE RS:NC_011311 LENGTH 83540 STATISTICS Number of nucleotides: 4655660 Number of protein genes: 3911 Number of RNA genes: 164 REFERENCE PMID:19099551 AUTHORS Hjerde E, et al. TITLE The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay. JOURNAL BMC Genomics 9:616 (2008) /// ENTRY T00783 Complete Genome NAME oca, O.carboxidovorans, OLICA, 504832 DEFINITION Oligotropha carboxidovorans OM5 ANNOTATION KOALA TAXONOMY TAX:504832 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha DATA_SOURCE RefSeq ORIGINAL_DB Mississippi State U CHROMOSOME Circular SEQUENCE RS:NC_011386 LENGTH 3745629 STATISTICS Number of nucleotides: 3745629 Number of protein genes: 3722 Number of RNA genes: 48 REFERENCE PMID:18539730 AUTHORS Paul D, et al. TITLE Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T. JOURNAL J Bacteriol 190:5531-2 (2008) /// ENTRY T00784 Complete Genome NAME ecy, E.coli_SE11, ECOLX, 409438 DEFINITION Escherichia coli O152:H28 SE11 (commensal strain) ANNOTATION KOALA TAXONOMY TAX:409438 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo CHROMOSOME Circular SEQUENCE RS:NC_011415 LENGTH 4887515 PLASMID pSE11-1; Circular SEQUENCE RS:NC_011419 LENGTH 100021 PLASMID pSE11-2; Circular SEQUENCE RS:NC_011413 LENGTH 91158 PLASMID pSE11-3; Circular SEQUENCE RS:NC_011416 LENGTH 60555 PLASMID pSE11-4; Circular SEQUENCE RS:NC_011407 LENGTH 6929 PLASMID pSE11-5; Circular SEQUENCE RS:NC_011408 LENGTH 5366 PLASMID pSE11-6; Circular SEQUENCE RS:NC_011411 LENGTH 4082 STATISTICS Number of nucleotides: 5155626 Number of protein genes: 5002 Number of RNA genes: 107 REFERENCE PMID:18931093 AUTHORS Oshima K, et al. TITLE Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult. JOURNAL DNA Res 15:375-86 (2008) /// ENTRY T00785 Complete Genome NAME rce, R.centenum, RHOCE, 414684 DEFINITION Rhodospirillum centenum SW ANNOTATION KOALA TAXONOMY TAX:414684 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum DATA_SOURCE RefSeq ORIGINAL_DB TGen CHROMOSOME Circular SEQUENCE RS:NC_011420 LENGTH 4355543 STATISTICS Number of nucleotides: 4355543 Number of protein genes: 4003 Number of RNA genes: 64 /// ENTRY T00786 Complete Genome NAME hpp, H.pylori_P12, HELPY, 570508 DEFINITION Helicobacter pylori P12 ANNOTATION KOALA TAXONOMY TAX:570508 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_011498 LENGTH 1673813 PLASMID HPP12; Circular SEQUENCE RS:NC_011499 LENGTH 10225 STATISTICS Number of nucleotides: 1684038 Number of protein genes: 1578 Number of RNA genes: 42 /// ENTRY T00787 Complete Genome NAME cbg, C.burnetii_CbuG_Q212, COXBU, 434923 DEFINITION Coxiella burnetii CbuG_Q212 ANNOTATION manual TAXONOMY TAX:434923 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella DATA_SOURCE RefSeq ORIGINAL_DB NIAID-RML CHROMOSOME Circular SEQUENCE RS:NC_011527 LENGTH 2008870 STATISTICS Number of nucleotides: 2008870 Number of protein genes: 1866 Number of RNA genes: 45 REFERENCE PMID:19047403 AUTHORS Beare PA, et al. TITLE Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the Genus Coxiella. JOURNAL Infect Immun 77:642-56 (2009) /// ENTRY T00788 Complete Genome NAME cbc, C.burnetii_CbuK_Q154, COXBU, 434924 DEFINITION Coxiella burnetii CbuK_Q154 ANNOTATION KOALA TAXONOMY TAX:434924 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_011528 LENGTH 2063100 PLASMID pQpRS_K_Q154; Circular SEQUENCE RS:NC_011526 LENGTH 39280 STATISTICS Number of nucleotides: 2102380 Number of protein genes: 1942 Number of RNA genes: 45 REFERENCE PMID:19047403 AUTHORS Beare PA, et al. TITLE Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the Genus Coxiella. JOURNAL Infect Immun 77:642-56 (2009) /// ENTRY T00789 Complete Genome NAME ton, T.onnurineus, THEON, 523850 DEFINITION Thermococcus onnurineus NA1 ANNOTATION KOALA TAXONOMY TAX:523850 LINEAGE Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus DATA_SOURCE RefSeq ORIGINAL_DB KORDI CHROMOSOME Circular SEQUENCE RS:NC_011529 LENGTH 1847607 STATISTICS Number of nucleotides: 1847607 Number of protein genes: 1975 Number of RNA genes: 51 REFERENCE PMID:18790866 AUTHORS Lee HS, et al. TITLE The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism. JOURNAL J Bacteriol 190:7491-9 (2008) /// ENTRY T00790 Complete Genome NAME afl, A.flavithermus, ANOFW, 491915 DEFINITION Anoxybacillus flavithermus WK1 ANNOTATION manual TAXONOMY TAX:491915 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Anoxybacillus DATA_SOURCE RefSeq ORIGINAL_DB U Hawaii CHROMOSOME Circular SEQUENCE RS:NC_011567 LENGTH 2846746 STATISTICS Number of nucleotides: 2846746 Number of protein genes: 2831 Number of RNA genes: 105 REFERENCE PMID:19014707 AUTHORS Saw JH, et al. TITLE Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1. JOURNAL Genome Biol 9:R161 (2008) /// ENTRY T00791 Complete Genome NAME swp, S.piezotolerans_WP3, SHEPW, 225849 DEFINITION Shewanella piezotolerans WP3 ANNOTATION KOALA TAXONOMY TAX:225849 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB Beijing CHROMOSOME Circular SEQUENCE RS:NC_011566 LENGTH 5396476 STATISTICS Number of nucleotides: 5396476 Number of protein genes: 4933 Number of RNA genes: 114 REFERENCE PMID:18398463 AUTHORS Wang F, et al. TITLE Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3. JOURNAL PLoS ONE 3:e1937 (2008) /// ENTRY T00792 Complete Genome NAME aps, A.pseudotrichonymphae, AZOPC, 511995 DEFINITION Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2, endosymbiont of Coptotermes formosanus (Formosan subterranean termite) ANNOTATION KOALA TAXONOMY TAX:511995 LINEAGE Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Candidatus Azobacteroides DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_011565 LENGTH 1114206 PLASMID pCFPG1; Circular SEQUENCE RS:NC_011564 LENGTH 37560 PLASMID pCFPG2; Circular SEQUENCE RS:NC_011561 LENGTH 37111 PLASMID pCFPG3; Circular SEQUENCE RS:NC_011562 LENGTH 31893 PLASMID pCFPG4; Circular SEQUENCE RS:NC_011563 LENGTH 4149 STATISTICS Number of nucleotides: 1224919 Number of protein genes: 852 Number of RNA genes: 42 REFERENCE PMID:19008447 AUTHORS Hongoh Y, et al. TITLE Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut. JOURNAL Science 322:1108-9 (2008) /// ENTRY T00793 Complete Genome NAME abn, A.baumannii_AB0057, ACIB5, 480119 DEFINITION Acinetobacter baumannii AB0057 ANNOTATION KOALA TAXONOMY TAX:480119 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter DATA_SOURCE RefSeq ORIGINAL_DB CWRU CHROMOSOME Circular SEQUENCE RS:NC_011586 LENGTH 4050513 PLASMID pAB0057; Circular SEQUENCE RS:NC_011585 LENGTH 8729 STATISTICS Number of nucleotides: 4059242 Number of protein genes: 3801 Number of RNA genes: 91 /// ENTRY T00794 Complete Genome NAME bln, B.longum_infantis_ATCC15697, BIFLI, 391904 DEFINITION Bifidobacterium longum subsp. infantis ATCC 15697 ANNOTATION KOALA TAXONOMY TAX:391904 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011593 LENGTH 2832748 STATISTICS Number of nucleotides: 2832748 Number of protein genes: 2416 Number of RNA genes: 93 REFERENCE PMID:19033196 AUTHORS Sela DA, et al. TITLE The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome. JOURNAL Proc Natl Acad Sci U S A 105:18964-9 (2008) /// ENTRY T00795 Complete Genome NAME abb, A.baumannii_AB307-0294, ACIB3, 557600 DEFINITION Acinetobacter baumannii AB307-0294 ANNOTATION KOALA TAXONOMY TAX:557600 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter DATA_SOURCE RefSeq ORIGINAL_DB U Buffalo CHROMOSOME Circular SEQUENCE RS:NC_011595 LENGTH 3760981 STATISTICS Number of nucleotides: 3760981 Number of protein genes: 3451 Number of RNA genes: 91 REFERENCE PMID:18931120 AUTHORS Adams MD, et al. TITLE Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii. JOURNAL J Bacteriol 190:8053-64 (2008) /// ENTRY T00796 Complete Genome NAME ecg, E.coli_0127, ECO27, 574521 DEFINITION Escherichia coli O127:H6 E2348/69 (EPEC) ANNOTATION KOALA TAXONOMY TAX:574521 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_011601 LENGTH 4965553 PLASMID pMAR2; Circular SEQUENCE RS:NC_011603 LENGTH 97978 PLASMID pE2348-2; Circular SEQUENCE RS:NC_011602 LENGTH 6147 STATISTICS Number of nucleotides: 5069678 Number of protein genes: 4651 Number of RNA genes: 191 REFERENCE PMID:18952797 AUTHORS Iguchi A, et al. TITLE Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. JOURNAL J Bacteriol 191:347-54 (2009) /// ENTRY T00797 Complete Genome NAME taf, T.africanus, THEAB, 484019 DEFINITION Thermosipho africanus TCF52B ANNOTATION KOALA TAXONOMY TAX:484019 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermosipho DATA_SOURCE RefSeq ORIGINAL_DB Dalhousie U CHROMOSOME Circular SEQUENCE RS:NC_011653 LENGTH 2016657 STATISTICS Number of nucleotides: 2016657 Number of protein genes: 1954 Number of RNA genes: 57 REFERENCE PMID:19124572 AUTHORS Nesbo CL, et al. TITLE The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea. JOURNAL J Bacteriol 191:1974-8 (2009) /// ENTRY T00798 Complete Genome NAME gdj, G.diazotrophicus_J, GLUDA, 272568 DEFINITION Gluconacetobacter diazotrophicus PAl 5 (JGI) ANNOTATION KOALA TAXONOMY TAX:272568 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011365 LENGTH 3887492 PLASMID pGDIA01; Circular SEQUENCE RS:NC_011367 LENGTH 27455 STATISTICS Number of nucleotides: 3914947 Number of protein genes: 3501 Number of RNA genes: 70 /// ENTRY T00799 Complete Genome NAME bcr, B.cereus_AH187, BACC7, 405534 DEFINITION Bacillus cereus AH187 ANNOTATION KOALA TAXONOMY TAX:405534 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011658 LENGTH 5269030 PLASMID pAH187_270; Circular SEQUENCE RS:NC_011655 LENGTH 270082 PLASMID pAH187_45; Circular SEQUENCE RS:NC_011656 LENGTH 45173 PLASMID pAH187_12; Circular SEQUENCE RS:NC_011654 LENGTH 12481 PLASMID pAH187_3; Circular SEQUENCE RS:NC_011657 LENGTH 3091 STATISTICS Number of nucleotides: 5599857 Number of protein genes: 5783 Number of RNA genes: 165 /// ENTRY T00800 Complete Genome NAME dtu, D.turgidum, DICTD, 515635 DEFINITION Dictyoglomus turgidum DSM 6724 ANNOTATION KOALA TAXONOMY TAX:515635 LINEAGE Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011661 LENGTH 1855560 STATISTICS Number of nucleotides: 1855560 Number of protein genes: 1744 Number of RNA genes: 53 /// ENTRY T00801 Complete Genome NAME lmh, L.monocytogenes_HCC23, LISMH, 552536 DEFINITION Listeria monocytogenes HCC23 ANNOTATION KOALA TAXONOMY TAX:552536 LINEAGE Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria DATA_SOURCE RefSeq ORIGINAL_DB Mississippi State U CHROMOSOME Circular SEQUENCE RS:NC_011660 LENGTH 2976212 STATISTICS Number of nucleotides: 2976212 Number of protein genes: 2974 Number of RNA genes: 85 /// ENTRY T00802 Complete Genome NAME msl, M.silvestris, METSI, 395965 DEFINITION Methylocella silvestris BL2 ANNOTATION KOALA TAXONOMY TAX:395965 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011666 LENGTH 4305430 STATISTICS Number of nucleotides: 4305430 Number of protein genes: 3818 Number of RNA genes: 57 /// ENTRY T00803 Complete Genome NAME sbp, S.baltica_OS223, SHEB2, 407976 DEFINITION Shewanella baltica OS223 ANNOTATION KOALA TAXONOMY TAX:407976 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011663 LENGTH 5145902 PLASMID pS22301; Circular SEQUENCE RS:NC_011664 LENGTH 88311 PLASMID pS22302; Circular SEQUENCE RS:NC_011668 LENGTH 65448 PLASMID pS22303; Circular SEQUENCE RS:NC_011665 LENGTH 59223 STATISTICS Number of nucleotides: 5358884 Number of protein genes: 4441 Number of RNA genes: 33 /// ENTRY T00804 Complete Genome NAME tmz, Thauera, 85643 DEFINITION Thauera sp. MZ1T ANNOTATION KOALA TAXONOMY TAX:85643 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011662 LENGTH 4496212 PLASMID pTha01; Circular SEQUENCE RS:NC_011667 LENGTH 78374 STATISTICS Number of nucleotides: 4574586 Number of protein genes: 3978 Number of RNA genes: 74 /// ENTRY T00805 Complete Genome NAME bcb, B.cereus_B4264, BACC4, 405532 DEFINITION Bacillus cereus B4264 ANNOTATION KOALA TAXONOMY TAX:405532 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011725 LENGTH 5419036 STATISTICS Number of nucleotides: 5419036 Number of protein genes: 5398 Number of RNA genes: 156 /// ENTRY T00806 Complete Genome NAME cyp, Cyanothece_PCC8801, SYNP8, 41431 DEFINITION Cyanothece sp. PCC 8801 ANNOTATION KOALA TAXONOMY TAX:41431 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Cyanothece DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011726 LENGTH 4679413 PLASMID pP880101; Circular SEQUENCE RS:NC_011721 LENGTH 50894 PLASMID pP880102; Circular SEQUENCE RS:NC_011723 LENGTH 40786 PLASMID pP880103; Circular SEQUENCE RS:NC_011727 LENGTH 16601 STATISTICS Number of nucleotides: 4787694 Number of protein genes: 4367 Number of RNA genes: 52 /// ENTRY T00807 Complete Genome NAME bbz, B.burgdorferi_ZS7, BORBU, 445985 DEFINITION Borrelia burgdorferi ZS7 ANNOTATION KOALA TAXONOMY TAX:445985 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia; Borrelia burgdorferi group DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011728 LENGTH 906707 PLASMID ZS7_cp26; Circular SEQUENCE RS:NC_011724 LENGTH 26514 PLASMID ZS7_cp32-1; Circular SEQUENCE RS:NC_011731 LENGTH 30330 PLASMID ZS7_cp32-12; Circular SEQUENCE RS:NC_011735 LENGTH 29806 PLASMID ZS7_cp32-3+10; Circular SEQUENCE RS:NC_011720 LENGTH 48168 PLASMID ZS7_cp32-4; Circular SEQUENCE RS:NC_011736 LENGTH 30964 PLASMID ZS7_cp32-9; Circular SEQUENCE RS:NC_011722 LENGTH 30467 PLASMID ZS7_lp17 SEQUENCE RS:NC_011782 LENGTH 17266 PLASMID ZS7_lp25 SEQUENCE RS:NC_011783 LENGTH 24326 PLASMID ZS7_lp28-1 SEQUENCE RS:NC_011780 LENGTH 23422 PLASMID ZS7_lp28-2 SEQUENCE RS:NC_011779 LENGTH 29758 PLASMID ZS7_lp28-3 SEQUENCE RS:NC_011781 LENGTH 28414 PLASMID ZS7_lp28-4 SEQUENCE RS:NC_011785 LENGTH 28885 PLASMID ZS7_lp36 SEQUENCE RS:NC_011778 LENGTH 36852 PLASMID ZS7_lp54 SEQUENCE RS:NC_011784 LENGTH 53615 STATISTICS Number of nucleotides: 1345494 Number of protein genes: 1239 Number of RNA genes: 38 /// ENTRY T00808 Complete Genome NAME cyc, Cyanothece_PCC7424, CYAP7, 65393 DEFINITION Cyanothece sp. PCC 7424 ANNOTATION KOALA TAXONOMY TAX:65393 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Cyanothece DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011729 LENGTH 5942652 PLASMID pP742401; Circular SEQUENCE RS:NC_011738 LENGTH 328635 PLASMID pP742402; Circular SEQUENCE RS:NC_011737 LENGTH 197705 PLASMID pP742403; Circular SEQUENCE RS:NC_011730 LENGTH 29239 PLASMID pP742404; Circular SEQUENCE RS:NC_011732 LENGTH 22636 PLASMID pP742405; Circular SEQUENCE RS:NC_011733 LENGTH 18083 PLASMID pP742406; Circular SEQUENCE RS:NC_011734 LENGTH 15219 STATISTICS Number of nucleotides: 6554169 Number of protein genes: 5710 Number of RNA genes: 56 /// ENTRY T00809 Complete Genome NAME mch, M.chloromethanicum, METCH, 440085 DEFINITION Methylobacterium chloromethanicum CM4 ANNOTATION manual TAXONOMY TAX:440085 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011757 LENGTH 5777908 PLASMID pMCHL01; Circular SEQUENCE RS:NC_011758 LENGTH 380207 PLASMID pMCHL02; Circular SEQUENCE RS:NC_011760 LENGTH 22617 STATISTICS Number of nucleotides: 6180732 Number of protein genes: 5516 Number of RNA genes: 79 /// ENTRY T00810 Complete Genome NAME afr, A.ferrooxidans_ATCC23270, THIFE, 243159 DEFINITION Acidithiobacillus ferrooxidans ATCC 23270 ANNOTATION manual TAXONOMY TAX:243159 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus DATA_SOURCE RefSeq ORIGINAL_DB JCVI-CMR CHROMOSOME Circular SEQUENCE RS:NC_011761 LENGTH 2982397 STATISTICS Number of nucleotides: 2982397 Number of protein genes: 3147 Number of RNA genes: 93 REFERENCE PMID:19077236 AUTHORS Valdes J, et al. TITLE Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications. JOURNAL BMC Genomics 9:597 (2008) /// ENTRY T00811 Complete Genome NAME efe, E.fergusonii, ESCF3, 585054 DEFINITION Escherichia fergusonii ATCC 35469 ANNOTATION KOALA TAXONOMY TAX:585054 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_011740 LENGTH 4588711 PLASMID pEFER; Circular SEQUENCE RS:NC_011743 LENGTH 55150 STATISTICS Number of nucleotides: 4643861 Number of protein genes: 4319 Number of RNA genes: 177 REFERENCE PMID:19165319 AUTHORS Touchon M, et al. TITLE Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. JOURNAL PLoS Genet 5:e1000344 (2009) /// ENTRY T00812 Complete Genome NAME vsp, V.splendidus, VIBSL, 575788 DEFINITION Vibrio splendidus LGP32 ANNOTATION KOALA TAXONOMY TAX:575788 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB Pasteur CHROMOSOME 1; Circular SEQUENCE RS:NC_011753 LENGTH 3299303 CHROMOSOME 2; Circular SEQUENCE RS:NC_011744 LENGTH 1675515 STATISTICS Number of nucleotides: 4974818 Number of protein genes: 4431 Number of RNA genes: 168 REFERENCE PMID:19364337 AUTHORS Le Roux F, et al. TITLE Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity. JOURNAL Environ Microbiol 11:1959-70 (2009) /// ENTRY T00813 Complete Genome NAME dal, D.alkenivorans, DESAA, 439235 DEFINITION Desulfatibacillum alkenivorans AK-01 ANNOTATION KOALA TAXONOMY TAX:439235 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011768 LENGTH 6517073 STATISTICS Number of nucleotides: 6517073 Number of protein genes: 5252 Number of RNA genes: 66 /// ENTRY T00814 Complete Genome NAME bcu, B.cereus_AH820, BACC0, 405535 DEFINITION Bacillus cereus AH820 ANNOTATION KOALA TAXONOMY TAX:405535 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME SEQUENCE RS:NC_011773 LENGTH 5302683 PLASMID pAH820_272 SEQUENCE RS:NC_011777 LENGTH 272145 PLASMID pAH820_10 SEQUENCE RS:NC_011771 LENGTH 10915 PLASMID pAH820_3 SEQUENCE RS:NC_011776 LENGTH 3091 STATISTICS Number of nucleotides: 5588834 Number of protein genes: 5810 Number of RNA genes: 138 /// ENTRY T00815 Complete Genome NAME bcg, B.cereus_G9842, BACC2, 405531 DEFINITION Bacillus cereus G9842 ANNOTATION KOALA TAXONOMY TAX:405531 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME SEQUENCE RS:NC_011772 LENGTH 5387334 PLASMID pG9842_140 SEQUENCE RS:NC_011774 LENGTH 140001 PLASMID pG9842_209 SEQUENCE RS:NC_011775 LENGTH 209488 STATISTICS Number of nucleotides: 5736823 Number of protein genes: 5857 Number of RNA genes: 144 /// ENTRY T00816 Complete Genome NAME dvm, D.vulgaris_Miyazaki_F, DESVM, 883 DEFINITION Desulfovibrio vulgaris Miyazaki F ANNOTATION KOALA TAXONOMY TAX:883 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011769 LENGTH 4040304 STATISTICS Number of nucleotides: 4040304 Number of protein genes: 3180 Number of RNA genes: 80 /// ENTRY T00817 Complete Genome NAME dka, D.kamchatkensis, DESK1, 490899 DEFINITION Desulfurococcus kamchatkensis 1221n ANNOTATION manual TAXONOMY TAX:490899 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Desulfurococcus DATA_SOURCE RefSeq ORIGINAL_DB Centre 'Bioengineering' CHROMOSOME Circular SEQUENCE RS:NC_011766 LENGTH 1365223 STATISTICS Number of nucleotides: 1365223 Number of protein genes: 1471 Number of RNA genes: 50 REFERENCE PMID:19114480 AUTHORS Ravin NV, et al. TITLE Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon Desulfurococcus kamchatkensis. JOURNAL J Bacteriol 191:2371-9 (2009) /// ENTRY T00818 Complete Genome NAME pag, P.aeruginosa_LESB58, PSEA8, 557722 DEFINITION Pseudomonas aeruginosa LESB58 ANNOTATION KOALA TAXONOMY TAX:557722 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_011770 LENGTH 6601757 STATISTICS Number of nucleotides: 6601757 Number of protein genes: 5925 Number of RNA genes: 102 REFERENCE PMID:19047519 AUTHORS Winstanley C, et al. TITLE Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. JOURNAL Genome Res 19:12-23 (2009) /// ENTRY T00819 Complete Genome NAME bla, B.animalis_lactis, BIFA0, 442563 DEFINITION Bifidobacterium animalis subsp. lactis AD011 ANNOTATION KOALA TAXONOMY TAX:442563 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium DATA_SOURCE RefSeq ORIGINAL_DB KRIBB CHROMOSOME Circular SEQUENCE RS:NC_011835 LENGTH 1933695 STATISTICS Number of nucleotides: 1933695 Number of protein genes: 1527 Number of RNA genes: 59 REFERENCE PMID:19011029 AUTHORS Kim JF, et al. TITLE Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011. JOURNAL J Bacteriol 191:678-9 (2009) /// ENTRY T00820 Complete Genome NAME bap, B.aphidicola_5A, BUCA5, 563178 DEFINITION Buchnera aphidicola 5A, endosymbiont of Acyrthosiphon pisum ANNOTATION KOALA TAXONOMY TAX:563178 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera DATA_SOURCE RefSeq ORIGINAL_DB U Arizona CHROMOSOME Circular SEQUENCE RS:NC_011833 LENGTH 642122 STATISTICS Number of nucleotides: 642122 Number of protein genes: 555 Number of RNA genes: 37 REFERENCE PMID:19150844 AUTHORS Moran NA, et al. TITLE The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria. JOURNAL Science 323:379-82 (2009) /// ENTRY T00821 Complete Genome NAME bau, B.aphidicola_Tuc7, BUCAT, 561501 DEFINITION Buchnera aphidicola Tuc7, endosymbiont of Acyrthosiphon pisum ANNOTATION KOALA TAXONOMY TAX:561501 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera DATA_SOURCE RefSeq ORIGINAL_DB U Arizona CHROMOSOME Circular SEQUENCE RS:NC_011834 LENGTH 641895 STATISTICS Number of nucleotides: 641895 Number of protein genes: 553 Number of RNA genes: 36 REFERENCE PMID:19150844 AUTHORS Moran NA, et al. TITLE The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria. JOURNAL Science 323:379-82 (2009) /// ENTRY T00822 Complete Genome NAME dhd, D.hafniense_DCB-2, DESHD, 272564 DEFINITION Desulfitobacterium hafniense DCB-2 ANNOTATION KOALA TAXONOMY TAX:272564 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011830 LENGTH 5279134 STATISTICS Number of nucleotides: 5279134 Number of protein genes: 4883 Number of RNA genes: 92 /// ENTRY T00823 Complete Genome NAME mpl, M.palustris, METPE, 521011 DEFINITION Candidatus Methanosphaerula palustris E1-9c ANNOTATION KOALA TAXONOMY TAX:521011 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Genera incertae sedis; Methanosphaerula DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011832 LENGTH 2922917 STATISTICS Number of nucleotides: 2922917 Number of protein genes: 2655 Number of RNA genes: 69 /// ENTRY T00824 Complete Genome NAME cag, C.aggregans, CHLAD, 326427 DEFINITION Chloroflexus aggregans DSM 9485 ANNOTATION KOALA TAXONOMY TAX:326427 LINEAGE Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae; Chloroflexus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011831 LENGTH 4684931 STATISTICS Number of nucleotides: 4684931 Number of protein genes: 3730 Number of RNA genes: 59 /// ENTRY T00825 Complete Genome NAME hap, H.parasuis, HAEPS, 557723 DEFINITION Haemophilus parasuis SH0165 ANNOTATION KOALA TAXONOMY TAX:557723 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_011852 LENGTH 2269156 STATISTICS Number of nucleotides: 2269156 Number of protein genes: 2021 Number of RNA genes: 76 REFERENCE PMID:19074396 AUTHORS Yue M, et al. TITLE Complete genome sequence of Haemophilus parasuis SH0165. JOURNAL J Bacteriol 191:1359-60 (2009) /// ENTRY T00826 Complete Genome NAME eck, E.coli_55989, ECO55, 585055 DEFINITION Escherichia coli 55989 (EAEC) ANNOTATION KOALA TAXONOMY TAX:585055 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope Pasteur CHROMOSOME Circular SEQUENCE RS:NC_011748 LENGTH 5154862 STATISTICS Number of nucleotides: 5154862 Number of protein genes: 4759 Number of RNA genes: 225 REFERENCE PMID:19165319 AUTHORS Touchon M, et al. TITLE Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. JOURNAL PLoS Genet 5:e1000344 (2009) /// ENTRY T00827 Complete Genome NAME ecq, E.coli_ED1a, ECO81, 585397 DEFINITION Escherichia coli ED1a ANNOTATION KOALA TAXONOMY TAX:585397 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_011745 LENGTH 5209548 STATISTICS Number of nucleotides: 5209548 Number of protein genes: 4915 Number of RNA genes: 203 REFERENCE PMID:19165319 AUTHORS Touchon M, et al. TITLE Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. JOURNAL PLoS Genet 5:e1000344 (2009) /// ENTRY T00828 Complete Genome NAME ecr, E.coli_IAI1, ECO8A, 585034 DEFINITION Escherichia coli IAI1 (commensal strain) ANNOTATION KOALA TAXONOMY TAX:585034 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_011741 LENGTH 4700560 STATISTICS Number of nucleotides: 4700560 Number of protein genes: 4351 Number of RNA genes: 195 REFERENCE PMID:19165319 AUTHORS Touchon M, et al. TITLE Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. JOURNAL PLoS Genet 5:e1000344 (2009) /// ENTRY T00829 Complete Genome NAME ect, E.coli_IAI39, ECO7I, 585057 DEFINITION Escherichia coli O7:K1 IAI39 (ExPEC) ANNOTATION KOALA TAXONOMY TAX:585057 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_011750 LENGTH 5132068 STATISTICS Number of nucleotides: 5132068 Number of protein genes: 4730 Number of RNA genes: 207 REFERENCE PMID:19165319 AUTHORS Touchon M, et al. TITLE Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. JOURNAL PLoS Genet 5:e1000344 (2009) /// ENTRY T00830 Complete Genome NAME ecz, E.coli_S88, ECO45, 585035 DEFINITION Escherichia coli O45:K1 S88 (ExPEC) ANNOTATION KOALA TAXONOMY TAX:585035 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_011742 LENGTH 5032268 PLASMID pECOS88; Circular SEQUENCE RS:NC_011747 LENGTH 133853 STATISTICS Number of nucleotides: 5166121 Number of protein genes: 4827 Number of RNA genes: 205 REFERENCE PMID:19165319 AUTHORS Touchon M, et al. TITLE Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. JOURNAL PLoS Genet 5:e1000344 (2009) /// ENTRY T00831 Complete Genome NAME eum, E.coli_UMN026, ECOLU, 585056 DEFINITION Escherichia coli O17:K52:H18 UMN026 (ExPEC) ANNOTATION KOALA TAXONOMY TAX:585056 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_011751 LENGTH 5202090 PLASMID p1ESCUM; Circular SEQUENCE RS:NC_011749 LENGTH 122301 PLASMID p2ESCUM; Circular SEQUENCE RS:NC_011739 LENGTH 33809 STATISTICS Number of nucleotides: 5358200 Number of protein genes: 5016 Number of RNA genes: 194 REFERENCE PMID:19165319 AUTHORS Touchon M, et al. TITLE Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. JOURNAL PLoS Genet 5:e1000344 (2009) /// ENTRY T00832 Complete Genome NAME ckr, C.kluyveri_NBRC, CLOKL, 583346 DEFINITION Clostridium kluyveri NBRC 12016 ANNOTATION KOALA TAXONOMY TAX:583346 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB RITE Japan CHROMOSOME Circular SEQUENCE RS:NC_011837 LENGTH 3896121 PLASMID pCKL1; Circular SEQUENCE RS:NC_011836 LENGTH 59182 STATISTICS Number of nucleotides: 3955303 Number of protein genes: 3523 Number of RNA genes: 81 /// ENTRY T00833 Complete Genome NAME acp, A.dehalogenans_2CP-1, ANAD2, 455488 DEFINITION Anaeromyxobacter dehalogenans 2CP-1 ANNOTATION KOALA TAXONOMY TAX:455488 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Anaeromyxobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011891 LENGTH 5029329 STATISTICS Number of nucleotides: 5029329 Number of protein genes: 4473 Number of RNA genes: 59 /// ENTRY T00834 Complete Genome NAME ach, A.chlorophenolicus, ARTCA, 452863 DEFINITION Arthrobacter chlorophenolicus A6 ANNOTATION KOALA TAXONOMY TAX:452863 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Arthrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011886 LENGTH 4395537 PLASMID pACHL01; Circular SEQUENCE RS:NC_011879 LENGTH 426858 PLASMID pACHL02; Circular SEQUENCE RS:NC_011881 LENGTH 158475 STATISTICS Number of nucleotides: 4980870 Number of protein genes: 4590 Number of RNA genes: 104 /// ENTRY T00835 Complete Genome NAME cce, C.cellulolyticum, CLOCE, 394503 DEFINITION Clostridium cellulolyticum H10 ANNOTATION KOALA TAXONOMY TAX:394503 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011898 LENGTH 4068724 STATISTICS Number of nucleotides: 4068724 Number of protein genes: 3390 Number of RNA genes: 88 /// ENTRY T00836 Complete Genome NAME cyn, Cyanothece_PCC7425, CYAP4, 395961 DEFINITION Cyanothece sp. PCC 7425 ANNOTATION KOALA TAXONOMY TAX:395961 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Cyanothece DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011884 LENGTH 5374574 PLASMID pP742501; Circular SEQUENCE RS:NC_011880 LENGTH 196837 PLASMID pP742502; Circular SEQUENCE RS:NC_011885 LENGTH 179973 PLASMID pP742503; Circular SEQUENCE RS:NC_011882 LENGTH 34726 STATISTICS Number of nucleotides: 5786110 Number of protein genes: 5327 Number of RNA genes: 57 /// ENTRY T00837 Complete Genome NAME dds, D.desulfuricans_ATCC27774, DESDA, 525146 DEFINITION Desulfovibrio desulfuricans subsp. desulfuricans ATCC 27774 ANNOTATION KOALA TAXONOMY TAX:525146 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011883 LENGTH 2873437 STATISTICS Number of nucleotides: 2873437 Number of protein genes: 2356 Number of RNA genes: 68 /// ENTRY T00838 Complete Genome NAME hor, H.orenii, HALOH, 373903 DEFINITION Halothermothrix orenii H 168 ANNOTATION KOALA TAXONOMY TAX:373903 LINEAGE Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011899 LENGTH 2578146 STATISTICS Number of nucleotides: 2578146 Number of protein genes: 2342 Number of RNA genes: 69 REFERENCE PMID:19145256 AUTHORS Mavromatis K, et al. TITLE Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. JOURNAL PLoS ONE 4:e4192 (2009) /// ENTRY T00839 Complete Genome NAME mno, M.nodulans, METNO, 460265 DEFINITION Methylobacterium nodulans ORS 2060 ANNOTATION KOALA TAXONOMY TAX:460265 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011894 LENGTH 7772460 PLASMID pMNOD01; Circular SEQUENCE RS:NC_011892 LENGTH 487734 PLASMID pMNOD02; Circular SEQUENCE RS:NC_011887 LENGTH 458070 PLASMID pMNOD03; Circular SEQUENCE RS:NC_011893 LENGTH 40463 PLASMID pMNOD04; Circular SEQUENCE RS:NC_011895 LENGTH 37542 PLASMID pMNOD05; Circular SEQUENCE RS:NC_011888 LENGTH 20286 PLASMID pMNOD06; Circular SEQUENCE RS:NC_011889 LENGTH 12638 PLASMID pMNOD07; Circular SEQUENCE RS:NC_011890 LENGTH 9829 STATISTICS Number of nucleotides: 8839022 Number of protein genes: 8308 Number of RNA genes: 96 /// ENTRY T00840 Complete Genome NAME tgr, Thioalkalivibrio_HL-EbGR7, THISH, 396588 DEFINITION Thioalkalivibrio sp. HL-EbGR7 ANNOTATION manual TAXONOMY TAX:396588 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011901 LENGTH 3464554 STATISTICS Number of nucleotides: 3464554 Number of protein genes: 3283 Number of RNA genes: 51 /// ENTRY T00841 Complete Genome NAME ccs, C.crescentus_NA1000, CAUCN, 565050 DEFINITION Caulobacter crescentus NA1000 ANNOTATION KOALA TAXONOMY TAX:565050 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter DATA_SOURCE RefSeq ORIGINAL_DB U Chicago CHROMOSOME Circular SEQUENCE RS:NC_011916 LENGTH 4042929 STATISTICS Number of nucleotides: 4042929 Number of protein genes: 3876 Number of RNA genes: 91 /// ENTRY T00842 Complete Genome NAME mlb, M.leprae_Br4923, MYCLB, 561304 DEFINITION Mycobacterium leprae Br4923 ANNOTATION KOALA TAXONOMY TAX:561304 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium DATA_SOURCE RefSeq ORIGINAL_DB Pasteur CHROMOSOME Circular SEQUENCE RS:NC_011896 LENGTH 3268071 STATISTICS Number of nucleotides: 3268071 Number of protein genes: 1604 Number of RNA genes: 47 REFERENCE PMID:19881526 AUTHORS Monot M, et al. TITLE Comparative genomic and phylogeographic analysis of Mycobacterium leprae. JOURNAL Nat Genet 41:1282-9 (2009) /// ENTRY T00843 Complete Genome NAME sne, S.pneumoniae_ATCC700669, STRPJ, 561276 DEFINITION Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage) ANNOTATION KOALA TAXONOMY TAX:561276 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_011900 LENGTH 2221315 STATISTICS Number of nucleotides: 2221315 Number of protein genes: 1990 Number of RNA genes: 89 REFERENCE PMID:19114491 AUTHORS Croucher NJ, et al. TITLE Role of conjugative elements in the evolution of the multidrug- resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. JOURNAL J Bacteriol 191:1480-9 (2009) /// ENTRY T00844 Complete Genome NAME rsk, R.sphaeroides_KD131, RHOSH, 557760 DEFINITION Rhodobacter sphaeroides KD131 ANNOTATION KOALA TAXONOMY TAX:557760 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter DATA_SOURCE RefSeq ORIGINAL_DB GenoTech CHROMOSOME 1; Circular SEQUENCE RS:NC_011963 LENGTH 3152792 CHROMOSOME 2; Circular SEQUENCE RS:NC_011958 LENGTH 1297647 PLASMID pRSKD131A; Circular SEQUENCE RS:NC_011962 LENGTH 157345 PLASMID pRSKD131B; Circular SEQUENCE RS:NC_011960 LENGTH 103355 STATISTICS Number of nucleotides: 4711139 Number of protein genes: 4569 Number of RNA genes: 66 REFERENCE PMID:19028901 AUTHORS Lim SK, et al. TITLE Complete genome sequence of Rhodobacter sphaeroides KD131. JOURNAL J Bacteriol 191:1118-9 (2009) /// ENTRY T00845 Complete Genome NAME tro, T.roseum, THERO, 309801 DEFINITION Thermomicrobium roseum DSM 5159 ANNOTATION KOALA TAXONOMY TAX:309801 LINEAGE Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_011959 LENGTH 2003006 PLASMID unnamed; Circular SEQUENCE RS:NC_011961 LENGTH 917738 STATISTICS Number of nucleotides: 2920744 Number of protein genes: 2854 Number of RNA genes: 48 REFERENCE PMID:19148287 AUTHORS Wu D, et al. TITLE Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. JOURNAL PLoS ONE 4:e4207 (2009) /// ENTRY T00846 Complete Genome NAME geo, Geobacter_FRC-32, GEOSF, 316067 DEFINITION Geobacter sp. FRC-32 ANNOTATION KOALA TAXONOMY TAX:316067 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011979 LENGTH 4304501 STATISTICS Number of nucleotides: 4304501 Number of protein genes: 3798 Number of RNA genes: 62 /// ENTRY T00847 Complete Genome NAME tna, T.neapolitana, THENE, 309803 DEFINITION Thermotoga neapolitana DSM 4359 ANNOTATION KOALA TAXONOMY TAX:309803 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_011978 LENGTH 1884562 STATISTICS Number of nucleotides: 1884562 Number of protein genes: 1937 Number of RNA genes: 51 /// ENTRY T00848 Complete Genome NAME mcl, M.caseolyticus, MACCJ, 458233 DEFINITION Macrococcus caseolyticus JCSC5402 ANNOTATION KOALA TAXONOMY TAX:458233 LINEAGE Bacteria; Firmicutes; Bacillales; Macrococcus DATA_SOURCE RefSeq ORIGINAL_DB Juntendo CHROMOSOME Circular SEQUENCE RS:NC_011999 LENGTH 2102324 PLASMID pMCCL1; Circular SEQUENCE RS:NC_011995 LENGTH 15667 PLASMID pMCCL2; Circular SEQUENCE RS:NC_011996 LENGTH 80545 PLASMID pMCCL3; Circular SEQUENCE RS:NC_011997 LENGTH 2131 PLASMID pMCCL4; Circular SEQUENCE RS:NC_011998 LENGTH 3417 PLASMID pMCCL5; Circular SEQUENCE RS:NC_012000 LENGTH 4398 PLASMID pMCCL6; Circular SEQUENCE RS:NC_012001 LENGTH 4226 PLASMID pMCCL7; Circular SEQUENCE RS:NC_012002 LENGTH 4061 PLASMID pMCCL8; Circular SEQUENCE RS:NC_012003 LENGTH 2968 STATISTICS Number of nucleotides: 2219737 Number of protein genes: 2052 Number of RNA genes: 61 REFERENCE PMID:19074389 AUTHORS Baba T, et al. TITLE Complete genome sequence of Macrococcus caseolyticus strain JSCS5402, reflecting the ancestral genome of the human-pathogenic staphylococci. JOURNAL J Bacteriol 191:1180-90 (2009) /// ENTRY T00849 Complete Genome NAME sub, S.uberis, STRUB, 218495 DEFINITION Streptococcus uberis 0140J ANNOTATION KOALA TAXONOMY TAX:218495 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_012004 LENGTH 1852352 STATISTICS Number of nucleotides: 1852352 Number of protein genes: 1762 Number of RNA genes: 83 REFERENCE PMID:19175920 AUTHORS Ward PN, et al. TITLE Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis. JOURNAL BMC Genomics 10:54 (2009) /// ENTRY T00850 Complete Genome NAME ara, A.radiobacter, AGRRK, 311403 DEFINITION Agrobacterium radiobacter K84 ANNOTATION KOALA TAXONOMY TAX:311403 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium DATA_SOURCE RefSeq ORIGINAL_DB VBI CHROMOSOME 1; Circular SEQUENCE RS:NC_011985 LENGTH 4005130 CHROMOSOME 2; Circular SEQUENCE RS:NC_011983 LENGTH 2650913 PLASMID pAtK84b; Circular SEQUENCE RS:NC_011990 LENGTH 184668 PLASMID pAtK84c; Circular SEQUENCE RS:NC_011987 LENGTH 388169 PLASMID pAgK84; Circular SEQUENCE RS:NC_011994 LENGTH 44420 STATISTICS Number of nucleotides: 7273300 Number of protein genes: 6684 Number of RNA genes: 68 REFERENCE PMID:19251847 AUTHORS Slater SC, et al. TITLE Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria. JOURNAL J Bacteriol 191:2501-11 (2009) /// ENTRY T00851 Complete Genome NAME avi, A.vitis, AGRVI, 311402 DEFINITION Agrobacterium vitis S4 ANNOTATION KOALA TAXONOMY TAX:311402 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium DATA_SOURCE RefSeq ORIGINAL_DB VBI CHROMOSOME 1; Circular SEQUENCE RS:NC_011989 LENGTH 3726375 CHROMOSOME 2; Circular SEQUENCE RS:NC_011988 LENGTH 1283187 PLASMID pAtS4a; Circular SEQUENCE RS:NC_011986 LENGTH 78730 PLASMID pAtS4b; Circular SEQUENCE RS:NC_011991 LENGTH 130435 PLASMID pAtS4c; Circular SEQUENCE RS:NC_011984 LENGTH 211620 PLASMID pAtS4e; Circular SEQUENCE RS:NC_011981 LENGTH 631775 PLASMID pTiS4; Circular SEQUENCE RS:NC_011982 LENGTH 258824 STATISTICS Number of nucleotides: 6320946 Number of protein genes: 5389 Number of RNA genes: 80 REFERENCE PMID:19251847 AUTHORS Slater SC, et al. TITLE Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria. JOURNAL J Bacteriol 191:2501-11 (2009) /// ENTRY T00852 Complete Genome NAME bcq, B.cereus_Q1, BACCQ, 361100 DEFINITION Bacillus cereus Q1 ANNOTATION KOALA TAXONOMY TAX:361100 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_011969 LENGTH 5214195 PLASMID pBc239; Circular SEQUENCE RS:NC_011973 LENGTH 239246 PLASMID pBc53; Circular SEQUENCE RS:NC_011971 LENGTH 52766 STATISTICS Number of nucleotides: 5506207 Number of protein genes: 5488 Number of RNA genes: 133 REFERENCE PMID:19060151 AUTHORS Xiong Z, et al. TITLE Complete genome sequence of the extremophilic Bacillus cereus strain Q1 with industrial applications. JOURNAL J Bacteriol 191:1120-1 (2009) /// ENTRY T00853 Complete Genome NAME dia, Diaphorobacter, DIAST, 535289 DEFINITION Acidovorax ebreus TPSY ANNOTATION KOALA TAXONOMY TAX:535289 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Diaphorobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_011992 LENGTH 3796573 STATISTICS Number of nucleotides: 3796573 Number of protein genes: 3479 Number of RNA genes: 69 REFERENCE PMID:20023012 AUTHORS Byrne-Bailey KG, et al. TITLE Completed genome sequence of the anaerobic iron-oxidizing bacterium Acidovorax ebreus strain TPSY. JOURNAL J Bacteriol 192:1475-6 (2010) /// ENTRY T00854 Complete Genome NAME elf, E.coli_LF82, 591946 DEFINITION Escherichia coli LF82 ANNOTATION KOALA TAXONOMY TAX:591946 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Genoscope COMMENT This record was discontinued by NCBI. CHROMOSOME Circular SEQUENCE RS:NC_011993 LENGTH 4773108 STATISTICS Number of nucleotides: 4773108 Number of protein genes: 4312 Number of RNA genes: 158 /// ENTRY T00855 Complete Genome NAME amf, A.marginale_Florida, ANAMF, 320483 DEFINITION Anaplasma marginale Florida ANNOTATION KOALA TAXONOMY TAX:320483 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma DATA_SOURCE RefSeq ORIGINAL_DB WSU CHROMOSOME Circular SEQUENCE RS:NC_012026 LENGTH 1202435 STATISTICS Number of nucleotides: 1202435 Number of protein genes: 940 Number of RNA genes: 40 REFERENCE PMID:19134224 AUTHORS Dark MJ, et al. TITLE Conservation in the face of diversity: multistrain analysis of an intracellular bacterium. JOURNAL BMC Genomics 10:16 (2009) /// ENTRY T00856 Complete Genome NAME hla, H.lacusprofundi, HALLT, 416348 DEFINITION Halorubrum lacusprofundi ATCC 49239 ANNOTATION manual TAXONOMY TAX:416348 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorubrum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_012029 LENGTH 2735295 CHROMOSOME 2; Circular SEQUENCE RS:NC_012028 LENGTH 525943 PLASMID pHLAC01; Circular SEQUENCE RS:NC_012030 LENGTH 431338 STATISTICS Number of nucleotides: 3692576 Number of protein genes: 3560 Number of RNA genes: 61 /// ENTRY T00857 Complete Genome NAME ate, A.thermophilum, ANATD, 521460 DEFINITION Anaerocellum thermophilum DSM 6725 ANNOTATION KOALA TAXONOMY TAX:521460 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Anaerocellum group; Anaerocellum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012034 LENGTH 2919718 PLASMID pATHE01; Circular SEQUENCE RS:NC_012036 LENGTH 8291 PLASMID pATHE02; Circular SEQUENCE RS:NC_012037 LENGTH 3653 STATISTICS Number of nucleotides: 2931662 Number of protein genes: 2666 Number of RNA genes: 60 REFERENCE PMID:19346307 AUTHORS Kataeva IA, et al. TITLE Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725. JOURNAL J Bacteriol 191:3760-1 (2009) /// ENTRY T00858 Complete Genome NAME cla, C.lari, CAMLR, 306263 DEFINITION Campylobacter lari RM2100 ANNOTATION KOALA TAXONOMY TAX:306263 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_012039 LENGTH 1525460 PLASMID pCL2100 (megaplasmid); Circular SEQUENCE RS:NC_012040 LENGTH 46201 STATISTICS Number of nucleotides: 1571661 Number of protein genes: 1545 Number of RNA genes: 57 REFERENCE PMID:18713059 AUTHORS Miller WG, et al. TITLE The complete genome sequence and analysis of the human pathogen Campylobacter lari. JOURNAL Foodborne Pathog Dis 5:371-86 (2008) /// ENTRY T00859 Complete Genome NAME chl, Chloroflexus_Y-400-fl, CHLSY, 480224 DEFINITION Chloroflexus sp. Y-400-fl ANNOTATION KOALA TAXONOMY TAX:480224 LINEAGE Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae; Chloroflexus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012032 LENGTH 5268950 STATISTICS Number of nucleotides: 5268950 Number of protein genes: 4159 Number of RNA genes: 60 /// ENTRY T00860 Complete Genome NAME nam, N.profundicola, NAUPA, 598659 DEFINITION Nautilia profundicola AmH ANNOTATION KOALA TAXONOMY TAX:598659 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Nautiliales; Nautiliaceae; Nautilia DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_012115 LENGTH 1676444 STATISTICS Number of nucleotides: 1676444 Number of protein genes: 1730 Number of RNA genes: 59 REFERENCE PMID:19197347 AUTHORS Campbell BJ, et al. TITLE Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. JOURNAL PLoS Genet 5:e1000362 (2009) /// ENTRY T00861 Complete Genome NAME dat, D.autotrophicum, DESAH, 177437 DEFINITION Desulfobacterium autotrophicum HRM2 ANNOTATION KOALA TAXONOMY TAX:177437 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium DATA_SOURCE RefSeq ORIGINAL_DB Goettingen CHROMOSOME Circular SEQUENCE RS:NC_012108 LENGTH 5589073 PLASMID pHRM2a; Circular SEQUENCE RS:NC_012109 LENGTH 68709 STATISTICS Number of nucleotides: 5657782 Number of protein genes: 4943 Number of RNA genes: 69 REFERENCE PMID:19187283 AUTHORS Strittmatter AW, et al. TITLE Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. JOURNAL Environ Microbiol 11:1038-55 (2009) /// ENTRY T00862 Complete Genome NAME sei, S.enterica_Paratyphi_C, SALET, 476213 DEFINITION Salmonella enterica subsp. enterica serovar Paratyphi C ANNOTATION manual TAXONOMY TAX:476213 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Paratyphi C DATA_SOURCE RefSeq ORIGINAL_DB PUHSC CHROMOSOME Circular SEQUENCE RS:NC_012125 LENGTH 4833080 PLASMID pSPCV; Circular SEQUENCE RS:NC_012124 LENGTH 55414 STATISTICS Number of nucleotides: 4888494 Number of protein genes: 4638 Number of RNA genes: 104 REFERENCE PMID:19229335 AUTHORS Liu WQ, et al. TITLE Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi. JOURNAL PLoS ONE 4:e4510 (2009) /// ENTRY T00863 Complete Genome NAME sca, S.carnosus, STACA, 396513 DEFINITION Staphylococcus carnosus subsp. carnosus TM300 ANNOTATION KOALA TAXONOMY TAX:396513 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB U Tuebingen CHROMOSOME SEQUENCE RS:NC_012121 LENGTH 2566424 STATISTICS Number of nucleotides: 2566424 Number of protein genes: 2461 Number of RNA genes: 76 REFERENCE PMID:19060169 AUTHORS Rosenstein R, et al. TITLE Genome analysis of the meat starter culture bacterium Staphylococcus carnosus TM300. JOURNAL Appl Environ Microbiol 75:811-22 (2009) /// ENTRY T00864 Complete Genome NAME mbt, M.bovis_BCG_Tokyo, MYCBT, 561275 DEFINITION Mycobacterium bovis BCG Tokyo 172 ANNOTATION KOALA TAXONOMY TAX:561275 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex DATA_SOURCE RefSeq ORIGINAL_DB Japan BCG CHROMOSOME Circular SEQUENCE RS:NC_012207 LENGTH 4371711 STATISTICS Number of nucleotides: 4371711 Number of protein genes: 3944 Number of RNA genes: 50 REFERENCE PMID:19200449 AUTHORS Seki M, et al. TITLE Whole genome sequence analysis of Mycobacterium bovis bacillus Calmette-Guerin (BCG) Tokyo 172: A comparative study of BCG vaccine substrains. JOURNAL Vaccine 27:1710-6 (2009) /// ENTRY T00865 Complete Genome NAME bhy, B.hyodysenteriae, TREHY, 565034 DEFINITION Brachyspira hyodysenteriae WA1 ANNOTATION manual TAXONOMY TAX:565034 LINEAGE Bacteria; Spirochaetes; Spirochaetales; Brachyspiraceae; Brachyspira DATA_SOURCE RefSeq ORIGINAL_DB Murdoch U CHROMOSOME Circular SEQUENCE RS:NC_012225 LENGTH 3000694 PLASMID pBHWA1; Circular SEQUENCE RS:NC_012226 LENGTH 35940 STATISTICS Number of nucleotides: 3036634 Number of protein genes: 2642 Number of RNA genes: 37 REFERENCE PMID:19262690 AUTHORS Bellgard MI, et al. TITLE Genome sequence of the pathogenic intestinal spirochete brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine. JOURNAL PLoS ONE 4:e4641 (2009) /// ENTRY T00866 Complete Genome NAME wri, Wolbachia_wRi, WOLWR, 66084 DEFINITION Wolbachia sp. wRi, endosymbiont of Drosophila simulans ANNOTATION KOALA TAXONOMY TAX:66084 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Wolbachieae; Wolbachia DATA_SOURCE RefSeq ORIGINAL_DB Uppsala CHROMOSOME Circular SEQUENCE RS:NC_012416 LENGTH 1445873 STATISTICS Number of nucleotides: 1445873 Number of protein genes: 1150 Number of RNA genes: 39 REFERENCE PMID:19307581 AUTHORS Klasson L, et al. TITLE The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. JOURNAL Proc Natl Acad Sci U S A 106:5725-30 (2009) /// ENTRY T00867 Complete Genome NAME bmi, B.melitensis_ATCC23457, BRUME, 546272 DEFINITION Brucella melitensis ATCC 23457 ANNOTATION KOALA TAXONOMY TAX:546272 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB LANL PATRIC CHROMOSOME I; Circular SEQUENCE RS:NC_012441 LENGTH 2125701 CHROMOSOME II; Circular SEQUENCE RS:NC_012442 LENGTH 1185518 STATISTICS Number of nucleotides: 3311219 Number of protein genes: 3136 Number of RNA genes: 72 /// ENTRY T00868 Complete Genome NAME aca, A.capsulatum, ACIC5, 240015 DEFINITION Acidobacterium capsulatum ATCC 51196 ANNOTATION manual TAXONOMY TAX:240015 LINEAGE Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_012483 LENGTH 4127356 STATISTICS Number of nucleotides: 4127356 Number of protein genes: 3377 Number of RNA genes: 57 REFERENCE PMID:19201974 AUTHORS Ward NL, et al. TITLE Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. JOURNAL Appl Environ Microbiol 75:2046-56 (2009) /// ENTRY T00869 Complete Genome NAME bcx, B.cereus_03BB102, BACC3, 572264 DEFINITION Bacillus cereus 03BB102 ANNOTATION KOALA TAXONOMY TAX:572264 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB JCVI JCVI-Pathema CHROMOSOME Circular SEQUENCE RS:NC_012472 LENGTH 5269628 PLASMID p03BB102_179; Circular SEQUENCE RS:NC_012473 LENGTH 179680 STATISTICS Number of nucleotides: 5449308 Number of protein genes: 5606 Number of RNA genes: 154 /// ENTRY T00870 Complete Genome NAME pmx, P.marina, PERMH, 123214 DEFINITION Persephonella marina EX-H1 ANNOTATION KOALA TAXONOMY TAX:123214 LINEAGE Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Persephonella DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_012440 LENGTH 1930284 PLASMID unnamed; Circular SEQUENCE RS:NC_012439 LENGTH 53682 STATISTICS Number of nucleotides: 1983966 Number of protein genes: 2051 Number of RNA genes: 42 REFERENCE PMID:19136599 AUTHORS Reysenbach AL, et al. TITLE Complete and draft genome sequences of six members of the Aquificales. JOURNAL J Bacteriol 191:1992-3 (2009) /// ENTRY T00871 Complete Genome NAME seq, S.equi_zooepidemicus, STRSZ, 40041 DEFINITION Streptococcus equi subsp. zooepidemicus H70 ANNOTATION KOALA TAXONOMY TAX:40041 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_012470 LENGTH 2149868 STATISTICS Number of nucleotides: 2149868 Number of protein genes: 1869 Number of RNA genes: 92 REFERENCE PMID:19325880 AUTHORS Holden MT, et al. TITLE Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens. JOURNAL PLoS Pathog 5:e1000346 (2009) /// ENTRY T00872 Complete Genome NAME snm, S.pneumoniae_70585, STRP7, 488221 DEFINITION Streptococcus pneumoniae 70585 ANNOTATION KOALA TAXONOMY TAX:488221 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME SEQUENCE RS:NC_012468 LENGTH 2184682 STATISTICS Number of nucleotides: 2184682 Number of protein genes: 2202 Number of RNA genes: 77 /// ENTRY T00873 Complete Genome NAME sjj, S.pneumoniae_JJA, STRZJ, 488222 DEFINITION Streptococcus pneumoniae JJA ANNOTATION KOALA TAXONOMY TAX:488222 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME SEQUENCE RS:NC_012466 LENGTH 2120234 STATISTICS Number of nucleotides: 2120234 Number of protein genes: 2123 Number of RNA genes: 70 /// ENTRY T00874 Complete Genome NAME spp, S.pneumoniae_P1031, STRZP, 488223 DEFINITION Streptococcus pneumoniae P1031 ANNOTATION KOALA TAXONOMY TAX:488223 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME SEQUENCE RS:NC_012467 LENGTH 2111882 STATISTICS Number of nucleotides: 2111882 Number of protein genes: 2073 Number of RNA genes: 77 /// ENTRY T00875 Complete Genome NAME snt, S.pneumoniae_Taiwan19F-14, STRZT, 487213 DEFINITION Streptococcus pneumoniae Taiwan19F-14 ANNOTATION KOALA TAXONOMY TAX:487213 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME SEQUENCE RS:NC_012469 LENGTH 2112148 STATISTICS Number of nucleotides: 2112148 Number of protein genes: 2044 Number of RNA genes: 77 /// ENTRY T00876 Complete Genome NAME saf, S.azorense, SULAA, 204536 DEFINITION Sulfurihydrogenibium azorense Az-Fu1 ANNOTATION manual TAXONOMY TAX:204536 LINEAGE Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Sulfurihydrogenibium DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_012438 LENGTH 1640877 STATISTICS Number of nucleotides: 1640877 Number of protein genes: 1723 Number of RNA genes: 43 REFERENCE PMID:19136599 AUTHORS Reysenbach AL, et al. TITLE Complete and draft genome sequences of six members of the Aquificales. JOURNAL J Bacteriol 191:1992-3 (2009) /// ENTRY T00877 Complete Genome NAME seu, S.equi_equi, STRE4, 553482 DEFINITION Streptococcus equi subsp. equi 4047 ANNOTATION KOALA TAXONOMY TAX:553482 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_012471 LENGTH 2253793 STATISTICS Number of nucleotides: 2253793 Number of protein genes: 2001 Number of RNA genes: 94 REFERENCE PMID:19325880 AUTHORS Holden MT, et al. TITLE Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens. JOURNAL PLoS Pathog 5:e1000346 (2009) /// ENTRY T00878 Complete Genome NAME gau, G.aurantiaca, GEMAT, 379066 DEFINITION Gemmatimonas aurantiaca T-27 ANNOTATION KOALA TAXONOMY TAX:379066 LINEAGE Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME Circular SEQUENCE RS:NC_012489 LENGTH 4636964 STATISTICS Number of nucleotides: 4636964 Number of protein genes: 3935 Number of RNA genes: 54 /// ENTRY T00879 Complete Genome NAME bbe, B.brevis, BREBN, 358681 DEFINITION Brevibacillus brevis NBRC 100599 ANNOTATION KOALA TAXONOMY TAX:358681 LINEAGE Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Brevibacillus DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME Circular SEQUENCE RS:NC_012491 LENGTH 6296436 STATISTICS Number of nucleotides: 6296436 Number of protein genes: 5947 Number of RNA genes: 174 /// ENTRY T00880 Complete Genome NAME ddr, D.deserti, DEIDV, 546414 DEFINITION Deinococcus deserti VCD115 ANNOTATION KOALA TAXONOMY TAX:546414 LINEAGE Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_012526 LENGTH 2819842 PLASMID p1; Circular SEQUENCE RS:NC_012527 LENGTH 324711 PLASMID p2; Circular SEQUENCE RS:NC_012529 LENGTH 314317 PLASMID p3; Circular SEQUENCE RS:NC_012528 LENGTH 396459 STATISTICS Number of nucleotides: 3855329 Number of protein genes: 3451 Number of RNA genes: 60 REFERENCE PMID:19370165 AUTHORS de Groot A, et al. TITLE Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti. JOURNAL PLoS Genet 5:e1000434 (2009) /// ENTRY T00881 Complete Genome NAME rer, R.erythropolis, RHOE4, 234621 DEFINITION Rhodococcus erythropolis PR4 ANNOTATION KOALA TAXONOMY TAX:234621 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Nocardiaceae; Rhodococcus DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME Circular SEQUENCE RS:NC_012490 LENGTH 6516310 PLASMID pREC1; Circular SEQUENCE RS:NC_007486 LENGTH 104014 PLASMID pREC2; Circular SEQUENCE RS:NC_007487 LENGTH 3637 PLASMID pREL1 SEQUENCE RS:NC_007491 LENGTH 271577 STATISTICS Number of nucleotides: 6895538 Number of protein genes: 6433 Number of RNA genes: 74 REFERENCE PMID:16423019 (plasmids) AUTHORS Sekine M, et al. TITLE Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4. JOURNAL Environ Microbiol 8:334-46 (2006) /// ENTRY T00882 Complete Genome NAME rop, R.opacus, RHOOB, 632772 DEFINITION Rhodococcus opacus B4 ANNOTATION KOALA TAXONOMY TAX:632772 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Nocardiaceae; Rhodococcus DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME SEQUENCE RS:NC_012522 LENGTH 7913450 PLASMID pROB01 SEQUENCE RS:NC_012520 LENGTH 558192 PLASMID pROB02 SEQUENCE RS:NC_012521 LENGTH 244997 PLASMID pKNR; Circular SEQUENCE RS:NC_012523 LENGTH 111160 STATISTICS Number of nucleotides: 8827799 Number of protein genes: 8189 Number of RNA genes: 62 /// ENTRY T00883 Complete Genome NAME cby, C.botulinum_A2, CLOBJ, 536232 DEFINITION Clostridium botulinum A2 Kyoto ANNOTATION KOALA TAXONOMY TAX:536232 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Los Alamos JCVI-Pathema CHROMOSOME Circular SEQUENCE RS:NC_012563 LENGTH 4155278 STATISTICS Number of nucleotides: 4155278 Number of protein genes: 3877 Number of RNA genes: 105 /// ENTRY T00884 Complete Genome NAME lhk, L.hongkongensis, LARHH, 557598 DEFINITION Laribacter hongkongensis HLHK9 ANNOTATION KOALA TAXONOMY TAX:557598 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Laribacter DATA_SOURCE RefSeq ORIGINAL_DB HKU CHROMOSOME Circular SEQUENCE RS:NC_012559 LENGTH 3169329 STATISTICS Number of nucleotides: 3169329 Number of protein genes: 3235 Number of RNA genes: 98 REFERENCE PMID:19283063 AUTHORS Woo PC, et al. TITLE The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats. JOURNAL PLoS Genet 5:e1000416 (2009) /// ENTRY T00885 Complete Genome NAME avn, A.vinelandii, AZOVI, 322710 DEFINITION Azotobacter vinelandii DJ ANNOTATION manual TAXONOMY TAX:322710 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter DATA_SOURCE RefSeq ORIGINAL_DB VBI CHROMOSOME Circular SEQUENCE RS:NC_012560 LENGTH 5365318 STATISTICS Number of nucleotides: 5365318 Number of protein genes: 5050 Number of RNA genes: 108 REFERENCE PMID:19429624 AUTHORS Setubal JC, et al. TITLE Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes. JOURNAL J Bacteriol 191:4534-45 (2009) /// ENTRY T00886 Complete Genome NAME bah, B.anthracis_CDC684, BACAC, 568206 DEFINITION Bacillus anthracis CDC 684 ANNOTATION KOALA TAXONOMY TAX:568206 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB LANL CHROMOSOME Circular SEQUENCE RS:NC_012581 LENGTH 5230115 PLASMID pX01; Circular SEQUENCE RS:NC_012579 LENGTH 181773 PLASMID pX02; Circular SEQUENCE RS:NC_012577 LENGTH 94875 STATISTICS Number of nucleotides: 5506763 Number of protein genes: 5902 Number of RNA genes: 140 /// ENTRY T00887 Complete Genome NAME car, C.aurimucosum, CORA7, 548476 DEFINITION Corynebacterium aurimucosum ATCC 700975 ANNOTATION KOALA TAXONOMY TAX:548476 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld CHROMOSOME Circular SEQUENCE RS:NC_012590 LENGTH 2790189 PLASMID pET44827; Circular SEQUENCE RS:NC_010813 LENGTH 29037 STATISTICS Number of nucleotides: 2819226 Number of protein genes: 2551 Number of RNA genes: 67 REFERENCE PMID:20137072 AUTHORS Trost E, et al. TITLE Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN- 1) isolated from a vaginal swab of a woman with spontaneous abortion. JOURNAL BMC Genomics 11:91 (2010) /// ENTRY T00888 Complete Genome NAME rhi, Rhizobium_NGR234, RHISN, 394 DEFINITION Rhizobium sp. NGR234 ANNOTATION KOALA TAXONOMY TAX:394 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium DATA_SOURCE RefSeq ORIGINAL_DB Goettingen Kazusa CHROMOSOME Circular SEQUENCE RS:NC_012587 LENGTH 3925702 PLASMID pNGR234a; Circular SEQUENCE RS:NC_000914 LENGTH 536165 PLASMID pNGR234b; Circular SEQUENCE RS:NC_012586 LENGTH 2430033 STATISTICS Number of nucleotides: 6891900 Number of protein genes: 6363 Number of RNA genes: 81 REFERENCE PMID:19376903 AUTHORS Schmeisser C, et al. TITLE Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems. JOURNAL Appl Environ Microbiol 75:4035-45 (2009) /// ENTRY T00889 Complete Genome NAME sis, S.islandicus_L.S.2.15, SULIL, 429572 DEFINITION Sulfolobus islandicus L.S.2.15 ANNOTATION manual TAXONOMY TAX:429572 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012589 LENGTH 2736272 STATISTICS Number of nucleotides: 2736272 Number of protein genes: 2737 Number of RNA genes: 50 REFERENCE PMID:19435847 AUTHORS Reno ML, et al. TITLE Biogeography of the Sulfolobus islandicus pan-genome. JOURNAL Proc Natl Acad Sci U S A 106:8605-10 (2009) /// ENTRY T00890 Complete Genome NAME sia, S.islandicus_M.14.25, SULIM, 427317 DEFINITION Sulfolobus islandicus M.14.25 ANNOTATION manual TAXONOMY TAX:427317 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012588 LENGTH 2608832 STATISTICS Number of nucleotides: 2608832 Number of protein genes: 2608 Number of RNA genes: 48 REFERENCE PMID:19435847 AUTHORS Reno ML, et al. TITLE Biogeography of the Sulfolobus islandicus pan-genome. JOURNAL Proc Natl Acad Sci U S A 106:8605-10 (2009) /// ENTRY T00891 Complete Genome NAME vcm, V.cholerae_M66-2, VIBCM, 579112 DEFINITION Vibrio cholerae M66-2 ANNOTATION KOALA TAXONOMY TAX:579112 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB Nankai China CHROMOSOME I; Circular SEQUENCE RS:NC_012578 LENGTH 2892523 CHROMOSOME II; Circular SEQUENCE RS:NC_012580 LENGTH 1046382 STATISTICS Number of nucleotides: 3938905 Number of protein genes: 3693 Number of RNA genes: 119 REFERENCE PMID:19115014 AUTHORS Feng L, et al. TITLE A recalibrated molecular clock and independent origins for the cholera pandemic clones. JOURNAL PLoS One 3:e4053 (2008) /// ENTRY T00892 Complete Genome NAME bai, B.anthracis_A0248, BACAA, 592021 DEFINITION Bacillus anthracis A0248 ANNOTATION KOALA TAXONOMY TAX:592021 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group DATA_SOURCE RefSeq ORIGINAL_DB LANL CHROMOSOME Circular SEQUENCE RS:NC_012659 LENGTH 5227419 PLASMID pXO1; Circular SEQUENCE RS:NC_012656 LENGTH 181677 PLASMID pXO2; Circular SEQUENCE RS:NC_012655 LENGTH 94830 STATISTICS Number of nucleotides: 5503926 Number of protein genes: 5291 Number of RNA genes: 138 /// ENTRY T00893 Complete Genome NAME bcv, B.cavernae, BEUC1, 471853 DEFINITION Beutenbergia cavernae DSM 12333 ANNOTATION manual TAXONOMY TAX:471853 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Beutenbergiaceae; Beutenbergia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012669 LENGTH 4669183 STATISTICS Number of nucleotides: 4669183 Number of protein genes: 4197 Number of RNA genes: 53 /// ENTRY T00894 Complete Genome NAME bpr, B.pseudomallei_MSHR346, BURPS, 536230 DEFINITION Burkholderia pseudomallei MSHR346 ANNOTATION KOALA TAXONOMY TAX:536230 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group DATA_SOURCE RefSeq ORIGINAL_DB LANL JCVI-Pathema CHROMOSOME I SEQUENCE RS:NC_012695 LENGTH 4098576 STATISTICS Number of nucleotides: 4098576 Number of protein genes: 4202 Number of RNA genes: 65 /// ENTRY T00895 Complete Genome NAME cbi, C.botulinum_Ba4, CLOB6, 515621 DEFINITION Clostridium botulinum Ba4 657 ANNOTATION KOALA TAXONOMY TAX:515621 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB LANL CHROMOSOME Circular SEQUENCE RS:NC_012658 LENGTH 3977794 PLASMID pCLJ; Circular SEQUENCE RS:NC_012654 LENGTH 270022 PLASMID pCLJ2; Circular SEQUENCE RS:NC_012657 LENGTH 9953 STATISTICS Number of nucleotides: 4257769 Number of protein genes: 4002 Number of RNA genes: 116 REFERENCE PMID:18060065 AUTHORS Smith TJ, et al. TITLE Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids. JOURNAL PLoS One 2:e1271 (2007) /// ENTRY T00896 Complete Genome NAME ckp, C.kroppenstedtii, CORK4, 645127 DEFINITION Corynebacterium kroppenstedtii DSM 44385 ANNOTATION KOALA TAXONOMY TAX:645127 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld U CHROMOSOME Circular SEQUENCE RS:NC_012704 LENGTH 2446804 STATISTICS Number of nucleotides: 2446804 Number of protein genes: 2018 Number of RNA genes: 55 REFERENCE PMID:18430482 AUTHORS Tauch A, et al. TITLE Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. JOURNAL J Biotechnol 136:22-30 (2008) /// ENTRY T00897 Complete Genome NAME eat, Exiguobacterium_AT1b, EXISA, 360911 DEFINITION Exiguobacterium sp. AT1b ANNOTATION KOALA TAXONOMY TAX:360911 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012673 LENGTH 2999895 STATISTICS Number of nucleotides: 2999895 Number of protein genes: 3020 Number of RNA genes: 98 /// ENTRY T00898 Complete Genome NAME lmc, L.monocytogenes_Clip81459, LISMC, 634178 DEFINITION Listeria monocytogenes Clip81459 ANNOTATION KOALA TAXONOMY TAX:634178 LINEAGE Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria DATA_SOURCE RefSeq ORIGINAL_DB Pasteur CHROMOSOME Circular SEQUENCE RS:NC_012488 LENGTH 2912690 STATISTICS Number of nucleotides: 2912690 Number of protein genes: 2766 Number of RNA genes: 85 /// ENTRY T00899 Complete Genome NAME pfs, P.fluorescens_SBW25, PSEFS, 216595 DEFINITION Pseudomonas fluorescens SBW25 ANNOTATION KOALA TAXONOMY TAX:216595 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_012660 LENGTH 6722539 PLASMID pQBR103; Circular SEQUENCE RS:NC_009444 LENGTH 425094 STATISTICS Number of nucleotides: 7147633 Number of protein genes: 6395 Number of RNA genes: 97 REFERENCE PMID:19432983 AUTHORS Silby MW, et al. TITLE Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. JOURNAL Genome Biol 10:R51 (2009) /// ENTRY T00900 Complete Genome NAME sim, S.islandicus_M.16.27, SULIA, 427318 DEFINITION Sulfolobus islandicus M.16.27 ANNOTATION manual TAXONOMY TAX:427318 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012632 LENGTH 2692402 STATISTICS Number of nucleotides: 2692402 Number of protein genes: 2656 Number of RNA genes: 48 REFERENCE PMID:19435847 AUTHORS Reno ML, et al. TITLE Biogeography of the Sulfolobus islandicus pan-genome. JOURNAL Proc Natl Acad Sci U S A 106:8605-10 (2009) /// ENTRY T00901 Complete Genome NAME siy, S.islandicus_Y.G.57.14, SULIY, 439386 DEFINITION Sulfolobus islandicus Y.G.57.14 ANNOTATION manual TAXONOMY TAX:439386 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012622 LENGTH 2702058 STATISTICS Number of nucleotides: 2702058 Number of protein genes: 2903 Number of RNA genes: 48 REFERENCE PMID:19435847 AUTHORS Reno ML, et al. TITLE Biogeography of the Sulfolobus islandicus pan-genome. JOURNAL Proc Natl Acad Sci U S A 106:8605-10 (2009) /// ENTRY T00902 Complete Genome NAME sin, S.islandicus_Y.N.15.51, SULIN, 419942 DEFINITION Sulfolobus islandicus Y.N.15.51 ANNOTATION manual TAXONOMY TAX:419942 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012623 LENGTH 2812165 PLASMID pYN01; Circular SEQUENCE RS:NC_012624 LENGTH 42245 STATISTICS Number of nucleotides: 2854410 Number of protein genes: 2900 Number of RNA genes: 50 REFERENCE PMID:19435847 AUTHORS Reno ML, et al. TITLE Biogeography of the Sulfolobus islandicus pan-genome. JOURNAL Proc Natl Acad Sci U S A 106:8605-10 (2009) /// ENTRY T00903 Complete Genome NAME vcj, V.cholerae_MJ-1236, VIBCH, 593588 DEFINITION Vibrio cholerae MJ-1236 ANNOTATION KOALA TAXONOMY TAX:593588 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB LANL CHROMOSOME 1; Circular SEQUENCE RS:NC_012668 LENGTH 3149584 CHROMOSOME 2; Circular SEQUENCE RS:NC_012667 LENGTH 1086784 STATISTICS Number of nucleotides: 4236368 Number of protein genes: 3772 Number of RNA genes: 120 /// ENTRY T00904 Complete Genome NAME tau, T.auensis, TOLAT, 595494 DEFINITION Tolumonas auensis DSM 9187 ANNOTATION manual TAXONOMY TAX:595494 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Tolumonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012691 LENGTH 3471292 STATISTICS Number of nucleotides: 3471292 Number of protein genes: 3130 Number of RNA genes: 120 /// ENTRY T00905 Complete Genome NAME bgl, B.glumae, BURGL, 626418 DEFINITION Burkholderia glumae BGR1 ANNOTATION KOALA TAXONOMY TAX:626418 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia DATA_SOURCE RefSeq ORIGINAL_DB U Seoul CHROMOSOME 1; Circular SEQUENCE RS:NC_012724 LENGTH 3906529 CHROMOSOME 2; Circular SEQUENCE RS:NC_012721 LENGTH 2827355 PLASMID bglu_1p; Circular SEQUENCE RS:NC_012723 LENGTH 133591 PLASMID bglu_2p; Circular SEQUENCE RS:NC_012718 LENGTH 141792 PLASMID bglu_3p; Circular SEQUENCE RS:NC_012720 LENGTH 141067 PLASMID bglu_4p; Circular SEQUENCE RS:NC_012725 LENGTH 134349 STATISTICS Number of nucleotides: 7284683 Number of protein genes: 5773 Number of RNA genes: 81 REFERENCE PMID:19329631 AUTHORS Lim J, et al. TITLE Complete genome sequence of Burkholderia glumae BGR1. JOURNAL J Bacteriol 191:3758-9 (2009) /// ENTRY T00906 Complete Genome NAME sid, S.islandicus_M.16.4, SULIK, 426118 DEFINITION Sulfolobus islandicus M.16.4 ANNOTATION manual TAXONOMY TAX:426118 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012726 LENGTH 2586647 STATISTICS Number of nucleotides: 2586647 Number of protein genes: 2735 Number of RNA genes: 51 REFERENCE PMID:19435847 AUTHORS Reno ML, et al. TITLE Biogeography of the Sulfolobus islandicus pan-genome. JOURNAL Proc Natl Acad Sci U S A 106:8605-10 (2009) /// ENTRY T00907 Complete Genome NAME rpk, R.peacockii, RICPU, 562019 DEFINITION Rickettsia peacockii Rustic ANNOTATION KOALA TAXONOMY TAX:562019 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group DATA_SOURCE RefSeq ORIGINAL_DB U Minnesota CHROMOSOME Circular SEQUENCE RS:NC_012730 LENGTH 1288492 PLASMID pRPR; Circular SEQUENCE RS:NC_012732 LENGTH 26406 STATISTICS Number of nucleotides: 1314898 Number of protein genes: 947 Number of RNA genes: 37 REFERENCE PMID:20027221 AUTHORS Felsheim RF, et al. TITLE Genome sequence of the endosymbiont Rickettsia peacockii and comparison with virulent Rickettsia rickettsii: identification of virulence factors. JOURNAL PLoS One 4:e8361 (2009) /// ENTRY T00908 Complete Genome NAME eel, E.eligens, EUBE2, 515620 DEFINITION Eubacterium eligens ATCC 27750 ANNOTATION manual TAXONOMY TAX:515620 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium DATA_SOURCE RefSeq ORIGINAL_DB U Washington CHROMOSOME Circular SEQUENCE RS:NC_012778 LENGTH 2144190 PLASMID p1; Circular SEQUENCE RS:NC_012780 LENGTH 626744 PLASMID p2; Circular SEQUENCE RS:NC_012782 LENGTH 60455 STATISTICS Number of nucleotides: 2831389 Number of protein genes: 2765 Number of RNA genes: 65 REFERENCE PMID:19321416 AUTHORS Mahowald MA, et al. TITLE Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. JOURNAL Proc Natl Acad Sci U S A 106:5859-64 (2009) /// ENTRY T00909 Complete Genome NAME ere, E.rectale, EUBR3, 515619 DEFINITION Eubacterium rectale ATCC 33656 ANNOTATION KOALA TAXONOMY TAX:515619 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium DATA_SOURCE RefSeq ORIGINAL_DB U Washington CHROMOSOME Circular SEQUENCE RS:NC_012781 LENGTH 3449685 STATISTICS Number of nucleotides: 3449685 Number of protein genes: 3621 Number of RNA genes: 77 REFERENCE PMID:19321416 AUTHORS Mahowald MA, et al. TITLE Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. JOURNAL Proc Natl Acad Sci U S A 106:5859-64 (2009) /// ENTRY T00910 Complete Genome NAME kpu, K.pneumoniae_NTUH-K2044, KLEPN, 484021 DEFINITION Klebsiella pneumoniae NTUH-K2044 ANNOTATION manual TAXONOMY TAX:484021 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella DATA_SOURCE RefSeq ORIGINAL_DB NHRI CHROMOSOME Circular SEQUENCE RS:NC_012731 LENGTH 5248520 PLASMID pK2044; Circular SEQUENCE RS:NC_006625 LENGTH 224152 STATISTICS Number of nucleotides: 5472672 Number of protein genes: 5262 Number of RNA genes: 124 REFERENCE PMID:19447910 AUTHORS Wu KM, et al. TITLE Genome sequencing and comparative analysis of Klebsiella pneumoniae NTUH-K2044, a strain causing liver abscess and meningitis. JOURNAL J Bacteriol 191:4492-501 (2009) /// ENTRY T00911 Complete Genome NAME hde, H.defensa, HAMD5, 572265 DEFINITION Candidatus Hamiltonella defensa 5AT, endosymbiont of Acyrthosiphon pisum ANNOTATION KOALA TAXONOMY TAX:572265 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; aphid secondary symbionts; Candidatus Hamiltonella DATA_SOURCE RefSeq ORIGINAL_DB U Arizona CHROMOSOME Circular SEQUENCE RS:NC_012751 LENGTH 2110331 PLASMID pHD5AT; Circular SEQUENCE RS:NC_012752 LENGTH 59032 STATISTICS Number of nucleotides: 2169363 Number of protein genes: 2148 Number of RNA genes: 85 REFERENCE PMID:19451630 AUTHORS Degnan PH, et al. TITLE Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. JOURNAL Proc Natl Acad Sci U S A 106:9063-8 (2009) /// ENTRY T00912 Complete Genome NAME eic, E.ictaluri, EDWI9, 634503 DEFINITION Edwardsiella ictaluri 93-146 ANNOTATION manual TAXONOMY TAX:634503 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_012779 LENGTH 3812315 STATISTICS Number of nucleotides: 3812315 Number of protein genes: 3783 Number of RNA genes: 111 /// ENTRY T00913 Complete Genome NAME ebw, E.coli_BW2952, ECOBW, 595496 DEFINITION Escherichia coli BW2952 (K-12 MC41000 with placMu50 fusion) ANNOTATION KOALA TAXONOMY TAX:595496 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Nankai China CHROMOSOME Circular SEQUENCE RS:NC_012759 LENGTH 4578159 STATISTICS Number of nucleotides: 4578159 Number of protein genes: 4084 Number of RNA genes: 171 REFERENCE PMID:19376874 AUTHORS Ferenci T, et al. TITLE Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. JOURNAL J Bacteriol 191:4025-9 (2009) /// ENTRY T00914 Complete Genome NAME kol, K.olearia, KOSOT, 521045 DEFINITION Kosmotoga olearia TBF 19.5.1 ANNOTATION manual TAXONOMY TAX:521045 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Kosmotoga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012785 LENGTH 2302126 STATISTICS Number of nucleotides: 2302126 Number of protein genes: 2118 Number of RNA genes: 55 /// ENTRY T00915 Complete Genome NAME gwc, Geobacillus_WCH70, GEOSW, 471223 DEFINITION Geobacillus sp. WCH70 ANNOTATION KOALA TAXONOMY TAX:471223 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Geobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012793 LENGTH 3464618 PLASMID pWCH7001; Circular SEQUENCE RS:NC_012794 LENGTH 33899 PLASMID pWCH7002; Circular SEQUENCE RS:NC_012790 LENGTH 10287 STATISTICS Number of nucleotides: 3508804 Number of protein genes: 3168 Number of RNA genes: 121 /// ENTRY T00916 Complete Genome NAME vap, V.paradoxus, VARPD, 543728 DEFINITION Variovorax paradoxus S110 ANNOTATION KOALA TAXONOMY TAX:543728 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_012791 LENGTH 5626353 CHROMOSOME 2; Circular SEQUENCE RS:NC_012792 LENGTH 1128644 STATISTICS Number of nucleotides: 6754997 Number of protein genes: 6279 Number of RNA genes: 71 /// ENTRY T00917 Complete Genome NAME dma, D.magneticus, DESMR, 573370 DEFINITION Desulfovibrio magneticus RS-1 ANNOTATION KOALA TAXONOMY TAX:573370 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME Circular SEQUENCE RS:NC_012796 LENGTH 5248049 PLASMID pDMC1; Circular SEQUENCE RS:NC_012797 LENGTH 58704 PLASMID pDMC2; Circular SEQUENCE RS:NC_012795 LENGTH 8867 STATISTICS Number of nucleotides: 5315620 Number of protein genes: 4700 Number of RNA genes: 60 REFERENCE PMID:19675025 AUTHORS Nakazawa H, et al. TITLE Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria. JOURNAL Genome Res 19:1801-8 (2009) /// ENTRY T00918 Complete Genome NAME mlu, M.luteus, MICLU, 465515 DEFINITION Micrococcus luteus NCTC 2665 ANNOTATION KOALA TAXONOMY TAX:465515 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Micrococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012803 LENGTH 2501097 STATISTICS Number of nucleotides: 2501097 Number of protein genes: 2236 Number of RNA genes: 55 /// ENTRY T00919 Complete Genome NAME mco, M.conjunctivae, 45361 DEFINITION Mycoplasma conjunctivae ANNOTATION KOALA TAXONOMY TAX:45361 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB Swiss CHROMOSOME Circular SEQUENCE RS:NC_012806 LENGTH 846214 STATISTICS Number of nucleotides: 846214 Number of protein genes: 691 Number of RNA genes: 36 REFERENCE PMID:19534756 AUTHORS Calderon-Copete SP, et al. TITLE The Mycoplasma conjunctivae genome sequencing, annotation and analysis. JOURNAL BMC Bioinformatics 10 Suppl 6:S7 (2009) /// ENTRY T00920 Complete Genome NAME tga, T.gammatolerans, THEGJ, 593117 DEFINITION Thermococcus gammatolerans EJ3 ANNOTATION manual TAXONOMY TAX:593117 LINEAGE Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus DATA_SOURCE RefSeq ORIGINAL_DB Univ Paris-Sud CHROMOSOME Circular SEQUENCE RS:NC_012804 LENGTH 2045438 STATISTICS Number of nucleotides: 2045438 Number of protein genes: 2156 Number of RNA genes: 54 REFERENCE PMID:19558674 AUTHORS Zivanovic Y, et al. TITLE Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. JOURNAL Genome Biol 10:R70 (2009) /// ENTRY T00921 Complete Genome NAME mea, M.extorquens_AM1, METEA, 272630 DEFINITION Methylobacterium extorquens AM1 ANNOTATION KOALA TAXONOMY TAX:272630 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium DATA_SOURCE RefSeq ORIGINAL_DB U Washington CHROMOSOME Circular SEQUENCE RS:NC_012808 LENGTH 5511322 PLASMID megaplasmid; Circular SEQUENCE RS:NC_012811 LENGTH 1261460 PLASMID p1META1; Circular SEQUENCE RS:NC_012807 LENGTH 44195 PLASMID p2META1; Circular SEQUENCE RS:NC_012809 LENGTH 37858 PLASMID p3META1; Circular SEQUENCE RS:NC_012810 LENGTH 24943 STATISTICS Number of nucleotides: 6879778 Number of protein genes: 6212 Number of RNA genes: 86 REFERENCE PMID:19440302 AUTHORS Vuilleumier S, et al. TITLE Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. JOURNAL PLoS One 4:e5584 (2009) /// ENTRY T00922 Complete Genome NAME bgr, B.grahamii, BARGR, 634504 DEFINITION Bartonella grahamii as4aup ANNOTATION KOALA TAXONOMY TAX:634504 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella DATA_SOURCE RefSeq ORIGINAL_DB Uppsala CHROMOSOME Circular SEQUENCE RS:NC_012846 LENGTH 2341328 PLASMID pBGR3; Circular SEQUENCE RS:NC_012847 LENGTH 28192 STATISTICS Number of nucleotides: 2369520 Number of protein genes: 1768 Number of RNA genes: 49 REFERENCE PMID:19578403 AUTHORS Berglund EC, et al. TITLE Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii. JOURNAL PLoS Genet 5:e1000546 (2009) /// ENTRY T00923 Complete Genome NAME blc, B.animalis_lactis_Bl-04, BIFAN, 580050 DEFINITION Bifidobacterium animalis subsp. lactis Bl-04 ANNOTATION KOALA TAXONOMY TAX:580050 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium DATA_SOURCE RefSeq ORIGINAL_DB Danisco CHROMOSOME Circular SEQUENCE RS:NC_012814 LENGTH 1938709 STATISTICS Number of nucleotides: 1938709 Number of protein genes: 1567 Number of RNA genes: 64 REFERENCE PMID:19376856 AUTHORS Barrangou R, et al. TITLE Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04. JOURNAL J Bacteriol 191:4144-51 (2009) /// ENTRY T00924 Complete Genome NAME blt, B.animalis_lactis_DSM10140, BIFAN, 555970 DEFINITION Bifidobacterium animalis subsp. lactis DSM 10140 ANNOTATION KOALA TAXONOMY TAX:555970 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium DATA_SOURCE RefSeq ORIGINAL_DB Danisco CHROMOSOME Circular SEQUENCE RS:NC_012815 LENGTH 1938483 STATISTICS Number of nucleotides: 1938483 Number of protein genes: 1566 Number of RNA genes: 63 REFERENCE PMID:19376856 AUTHORS Barrangou R, et al. TITLE Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04. JOURNAL J Bacteriol 191:4144-51 (2009) /// ENTRY T00925 Complete Genome NAME rpf, R.pickettii_12D, BURPI, 428406 DEFINITION Ralstonia pickettii 12D ANNOTATION KOALA TAXONOMY TAX:428406 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_012856 LENGTH 3647724 CHROMOSOME 2; Circular SEQUENCE RS:NC_012857 LENGTH 1323321 PLASMID pRp12D01; Circular SEQUENCE RS:NC_012855 LENGTH 389779 PLASMID pRp12D02; Circular SEQUENCE RS:NC_012849 LENGTH 273136 PLASMID pRp12D03; Circular SEQUENCE RS:NC_012851 LENGTH 51398 STATISTICS Number of nucleotides: 5685358 Number of protein genes: 5361 Number of RNA genes: 70 /// ENTRY T00926 Complete Genome NAME rlg, R.leguminosarum_trifolii_WSM1325, RHILT, 395491 DEFINITION Rhizobium leguminosarum bv. trifolii WSM1325 ANNOTATION KOALA TAXONOMY TAX:395491 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012850 LENGTH 4767043 PLASMID pR132501; Circular SEQUENCE RS:NC_012848 LENGTH 828924 PLASMID pR132502; Circular SEQUENCE RS:NC_012858 LENGTH 660973 PLASMID pR132503; Circular SEQUENCE RS:NC_012853 LENGTH 516088 PLASMID pR132504; Circular SEQUENCE RS:NC_012852 LENGTH 350312 PLASMID pR132505; Circular SEQUENCE RS:NC_012854 LENGTH 294782 STATISTICS Number of nucleotides: 7418122 Number of protein genes: 7001 Number of RNA genes: 63 /// ENTRY T00927 Complete Genome NAME dda, D.dadantii, DICDA, 579405 DEFINITION Dickeya dadantii Ech703 ANNOTATION manual TAXONOMY TAX:579405 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012880 LENGTH 4679450 STATISTICS Number of nucleotides: 4679450 Number of protein genes: 3970 Number of RNA genes: 100 /// ENTRY T00928 Complete Genome NAME tsi, T.sibiricus, 604354 DEFINITION Thermococcus sibiricus MM 739 ANNOTATION KOALA TAXONOMY TAX:604354 LINEAGE Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus DATA_SOURCE RefSeq ORIGINAL_DB Centre 'Bioengineering' CHROMOSOME Circular SEQUENCE RS:NC_012883 LENGTH 1845800 STATISTICS Number of nucleotides: 1845800 Number of protein genes: 2035 Number of RNA genes: 50 REFERENCE PMID:19447963 AUTHORS Mardanov AV, et al. TITLE Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis. JOURNAL Appl Environ Microbiol 75:4580-8 (2009) /// ENTRY T00929 Complete Genome NAME aap, A.aphrophilus, HAEAP, 634176 DEFINITION Aggregatibacter aphrophilus NJ8700 ANNOTATION manual TAXONOMY TAX:634176 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter DATA_SOURCE RefSeq ORIGINAL_DB Sackler CHROMOSOME Circular SEQUENCE RS:NC_012913 LENGTH 2313035 STATISTICS Number of nucleotides: 2313035 Number of protein genes: 2219 Number of RNA genes: 76 REFERENCE PMID:19447908 AUTHORS Di Bonaventura MP, et al. TITLE Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700. JOURNAL J Bacteriol 191:4693-4 (2009) /// ENTRY T00930 Complete Genome NAME dze, D.zeae, 561229 DEFINITION Dickeya zeae Ech1591 ANNOTATION KOALA TAXONOMY TAX:561229 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012912 LENGTH 4813854 STATISTICS Number of nucleotides: 4813854 Number of protein genes: 4163 Number of RNA genes: 100 /// ENTRY T00931 Complete Genome NAME ebl, E.coli_BL21, ECOLX, 511693 DEFINITION Escherichia coli BL21 ANNOTATION KOALA TAXONOMY TAX:511693 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq COMMENT This record was discontinued by NCBI. CHROMOSOME Circular SEQUENCE RS:NC_012892 LENGTH 4557041 STATISTICS Number of nucleotides: 4557041 Number of protein genes: 4087 /// ENTRY T00932 Complete Genome NAME sds, S.dysgalactiae, STREQ, 486410 DEFINITION Streptococcus dysgalactiae subsp. equisimilis GGS_124 ANNOTATION KOALA TAXONOMY TAX:486410 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB IMCJ CHROMOSOME 1; Circular SEQUENCE RS:NC_012891 LENGTH 2106340 STATISTICS Number of nucleotides: 2106340 Number of protein genes: 2095 Number of RNA genes: 72 /// ENTRY T00933 Complete Genome NAME gem, Geobacter_M21, 443144 DEFINITION Geobacter sp. M21 ANNOTATION KOALA TAXONOMY TAX:443144 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012918 LENGTH 4745806 STATISTICS Number of nucleotides: 4745806 Number of protein genes: 4080 Number of RNA genes: 75 /// ENTRY T00934 Complete Genome NAME pct, P.carotovorum, PECCC, 561230 DEFINITION Pectobacterium carotovorum subsp. carotovorum PC1 ANNOTATION KOALA TAXONOMY TAX:561230 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012917 LENGTH 4862913 STATISTICS Number of nucleotides: 4862913 Number of protein genes: 4246 Number of RNA genes: 103 /// ENTRY T00935 Complete Genome NAME ssb, S.suis_BM407, STRSU, 568814 DEFINITION Streptococcus suis BM407 ANNOTATION KOALA TAXONOMY TAX:568814 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_012926 LENGTH 2146229 PLASMID pBM407; Circular SEQUENCE RS:NC_012923 LENGTH 24579 STATISTICS Number of nucleotides: 2170808 Number of protein genes: 1947 Number of RNA genes: 77 REFERENCE PMID:19603075 AUTHORS Holden MT, et al. TITLE Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. JOURNAL PLoS One 4:e6072 (2009) /// ENTRY T00936 Complete Genome NAME ssi, S.suis_P1-7, STRSU, 218494 DEFINITION Streptococcus suis P1/7 ANNOTATION KOALA TAXONOMY TAX:218494 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_012925 LENGTH 2007491 STATISTICS Number of nucleotides: 2007491 Number of protein genes: 1824 Number of RNA genes: 69 REFERENCE PMID:19603075 AUTHORS Holden MT, et al. TITLE Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. JOURNAL PLoS One 4:e6072 (2009) /// ENTRY T00937 Complete Genome NAME sss, S.suis_SC84, STRSU, 568813 DEFINITION Streptococcus suis SC84 ANNOTATION KOALA TAXONOMY TAX:568813 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_012924 LENGTH 2095898 STATISTICS Number of nucleotides: 2095898 Number of protein genes: 1898 Number of RNA genes: 81 REFERENCE PMID:19603075 AUTHORS Holden MT, et al. TITLE Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. JOURNAL PLoS One 4:e6072 (2009) /// ENTRY T00938 Complete Genome NAME hci, H.cicadicola, 573234 DEFINITION Candidatus Hodgkinia cicadicola Dsem ANNOTATION KOALA TAXONOMY TAX:573234 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Hodgkinia DATA_SOURCE RefSeq ORIGINAL_DB U Arizona CHROMOSOME Circular SEQUENCE RS:NC_012960 LENGTH 143795 STATISTICS Number of nucleotides: 143795 Number of protein genes: 169 Number of RNA genes: 18 REFERENCE PMID:19609354 AUTHORS McCutcheon JP, et al. TITLE Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont. JOURNAL PLoS Genet 5:e1000565 (2009) /// ENTRY T00939 Complete Genome NAME ebd, E.coli_BL21_DE3, ECOLX, 469008 DEFINITION Escherichia coli BL21(DE3) ANNOTATION KOALA TAXONOMY TAX:469008 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012947 LENGTH 4570938 STATISTICS Number of nucleotides: 4570938 Number of protein genes: 4228 Number of RNA genes: 112 /// ENTRY T00940 Complete Genome NAME mtb, M.tuberculosis_KZN1435, MYCTU, 478434 DEFINITION Mycobacterium tuberculosis KZN 1435 ANNOTATION KOALA TAXONOMY TAX:478434 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex DATA_SOURCE RefSeq ORIGINAL_DB Broad CHROMOSOME Circular SEQUENCE RS:NC_012943 LENGTH 4398250 STATISTICS Number of nucleotides: 4398250 Number of protein genes: 4059 Number of RNA genes: 48 /// ENTRY T00941 Complete Genome NAME pay, P.asymbiotica, 291112 DEFINITION Photorhabdus asymbiotica ANNOTATION manual TAXONOMY TAX:291112 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_012962 LENGTH 5064808 PLASMID pPAT; Circular SEQUENCE RS:NC_012961 LENGTH 29330 STATISTICS Number of nucleotides: 5094138 Number of protein genes: 4417 Number of RNA genes: 137 REFERENCE PMID:19583835 AUTHORS Wilkinson P, et al. TITLE Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens. JOURNAL BMC Genomics 10:302 (2009) /// ENTRY T00942 Complete Genome NAME mmb, M.mobilis, 583345 DEFINITION Methylotenera mobilis JLW8 ANNOTATION KOALA TAXONOMY TAX:583345 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012968 LENGTH 2547570 STATISTICS Number of nucleotides: 2547570 Number of protein genes: 2338 Number of RNA genes: 55 /// ENTRY T00943 Complete Genome NAME mei, Methylovorus_SIP3-4, 582744 DEFINITION Methylovorus sp. SIP3-4 ANNOTATION KOALA TAXONOMY TAX:582744 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012969 LENGTH 2995511 PLASMID pMsip01; Circular SEQUENCE RS:NC_012970 LENGTH 76680 PLASMID pMsip02; Circular SEQUENCE RS:NC_012972 LENGTH 9816 STATISTICS Number of nucleotides: 3082007 Number of protein genes: 2909 Number of RNA genes: 57 /// ENTRY T00944 Complete Genome NAME ebr, E.coli_B_REL606, 413997 DEFINITION Escherichia coli B REL606 ANNOTATION KOALA TAXONOMY TAX:413997 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB KRIBB CHROMOSOME Circular SEQUENCE RS:NC_012967 LENGTH 4629812 STATISTICS Number of nucleotides: 4629812 Number of protein genes: 4205 Number of RNA genes: 107 REFERENCE PMID:19786035 AUTHORS Jeong H, et al. TITLE Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). JOURNAL J Mol Biol 394:644-52 (2009) /// ENTRY T00945 Complete Genome NAME hba, H.baltica, 582402 DEFINITION Hirschia baltica ATCC 49814 ANNOTATION KOALA TAXONOMY TAX:582402 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012982 LENGTH 3455622 PLASMID pHbal01; Circular SEQUENCE RS:NC_012983 LENGTH 84492 STATISTICS Number of nucleotides: 3540114 Number of protein genes: 3187 Number of RNA genes: 47 /// ENTRY T00946 Complete Genome NAME lpj, L.plantarum_JDM1, 644042 DEFINITION Lactobacillus plantarum JDM1 ANNOTATION KOALA TAXONOMY TAX:644042 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB Shanghai Jiao Tong U CHROMOSOME Circular SEQUENCE RS:NC_012984 LENGTH 3197759 STATISTICS Number of nucleotides: 3197759 Number of protein genes: 2948 Number of RNA genes: 78 REFERENCE PMID:19465650 AUTHORS Zhang ZY, et al. TITLE Complete genome sequence of Lactobacillus plantarum JDM1. JOURNAL J Bacteriol 191:5020-1 (2009) /// ENTRY T00947 Complete Genome NAME mdi, M.dichloromethanicum, 661410 DEFINITION Methylobacterium extorquens DM4 ANNOTATION manual TAXONOMY TAX:661410 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_012988 LENGTH 5943768 PLASMID p1METDI; Circular SEQUENCE RS:NC_012987 LENGTH 141504 PLASMID p2METDI; Circular SEQUENCE RS:NC_012989 LENGTH 38579 STATISTICS Number of nucleotides: 6123851 Number of protein genes: 5736 Number of RNA genes: 88 REFERENCE PMID:19440302 AUTHORS Vuilleumier S, et al. TITLE Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. JOURNAL PLoS One 4:e5584 (2009) /// ENTRY T00948 Complete Genome NAME las, L.asiaticus, LIBAS, 537021 DEFINITION Candidatus Liberibacter asiaticus psy62 ANNOTATION KOALA TAXONOMY TAX:537021 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Candidatus Liberibacter DATA_SOURCE RefSeq ORIGINAL_DB USDA/ARS CHROMOSOME Circular SEQUENCE RS:NC_012985 LENGTH 1226704 STATISTICS Number of nucleotides: 1226704 Number of protein genes: 1109 Number of RNA genes: 53 REFERENCE PMID:19589076 AUTHORS Duan Y, et al. TITLE Complete Genome Sequence of Citrus Huanglongbing Bacterium, 'Candidatus Liberibacter asiaticus' Obtained Through Metagenomics. JOURNAL Mol Plant Microbe Interact 22:1011-20 (2009) /// ENTRY T00949 Complete Genome NAME etw, E.coli_O157_TW14359, 544404 DEFINITION Escherichia coli O157:H7 TW14359 (EHEC) ANNOTATION KOALA TAXONOMY TAX:544404 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Washington U CHROMOSOME Circular SEQUENCE RS:NC_013008 LENGTH 5528136 PLASMID pO157; Circular SEQUENCE RS:NC_013010 LENGTH 94601 STATISTICS Number of nucleotides: 5622737 Number of protein genes: 5365 Number of RNA genes: 128 REFERENCE PMID:19564389 AUTHORS Kulasekara BR, et al. TITLE Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence. JOURNAL Infect Immun 77:3713-21 (2009) /// ENTRY T00950 Complete Genome NAME hpb, H.pylori_B38, 592205 DEFINITION Helicobacter pylori B38 ANNOTATION KOALA TAXONOMY TAX:592205 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq ORIGINAL_DB Pasteur CHROMOSOME Circular SEQUENCE RS:NC_012973 LENGTH 1576758 STATISTICS Number of nucleotides: 1576758 Number of protein genes: 1382 Number of RNA genes: 45 /// ENTRY T00951 Complete Genome NAME nri, N.risticii, 434131 DEFINITION Neorickettsia risticii Illinois ANNOTATION KOALA TAXONOMY TAX:434131 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Neorickettsia DATA_SOURCE RefSeq ORIGINAL_DB Ohio CHROMOSOME Circular SEQUENCE RS:NC_013009 LENGTH 879977 STATISTICS Number of nucleotides: 879977 Number of protein genes: 892 Number of RNA genes: 37 REFERENCE PMID:19661282 AUTHORS Lin M, et al. TITLE Analysis of complete genome sequence of Neorickettsia risticii: causative agent of Potomac horse fever. JOURNAL Nucleic Acids Res 37:6076-91 (2009) /// ENTRY T00952 Complete Genome NAME ttu, T.turnerae, TERTT, 377629 DEFINITION Teredinibacter turnerae T7901 ANNOTATION manual TAXONOMY TAX:377629 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadales genera incertae sedis; Teredinibacter DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_012997 LENGTH 5193164 STATISTICS Number of nucleotides: 5193164 Number of protein genes: 4254 Number of RNA genes: 54 REFERENCE PMID:19568419 AUTHORS Yang JC, et al. TITLE The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). JOURNAL PLoS One 4:e6085 (2009) /// ENTRY T00953 Complete Genome NAME fba, F.bacterium, 531844 DEFINITION Flavobacteriaceae bacterium 3519-10 ANNOTATION KOALA TAXONOMY TAX:531844 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Flavobacteriaceae DATA_SOURCE RefSeq ORIGINAL_DB U Nevada CHROMOSOME Circular SEQUENCE RS:NC_013062 LENGTH 2768102 STATISTICS Number of nucleotides: 2768102 Number of protein genes: 2534 Number of RNA genes: 48 /// ENTRY T00954 Complete Genome NAME nmi, N.meningitidis_alpha14, 662598 DEFINITION Neisseria meningitidis alpha14 (contains capsule null locus) ANNOTATION KOALA TAXONOMY TAX:662598 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld CHROMOSOME Circular SEQUENCE RS:NC_013016 LENGTH 2145295 STATISTICS Number of nucleotides: 2145295 Number of protein genes: 1872 Number of RNA genes: 72 REFERENCE PMID:18305155 AUTHORS Schoen C, et al. TITLE Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. JOURNAL Proc Natl Acad Sci U S A 105:3473-8 (2008) /// ENTRY T00955 Complete Genome NAME bmr, B.microti, 568815 DEFINITION Brucella microti CCM 4915 ANNOTATION KOALA TAXONOMY TAX:568815 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella DATA_SOURCE RefSeq ORIGINAL_DB CNRS Marseille CHROMOSOME 1; Circular SEQUENCE RS:NC_013119 LENGTH 2117050 CHROMOSOME 2; Circular SEQUENCE RS:NC_013118 LENGTH 1220319 STATISTICS Number of nucleotides: 3337369 Number of protein genes: 3282 Number of RNA genes: 64 REFERENCE PMID:19653890 AUTHORS Audic S, et al. TITLE Brucella microti: the genome sequence of an emerging pathogen. JOURNAL BMC Genomics 10:352 (2009) /// ENTRY T00956 Complete Genome NAME afo, A.ferrooxidans_DSM10331, 525909 DEFINITION Acidimicrobium ferrooxidans DSM 10331 ANNOTATION manual TAXONOMY TAX:525909 LINEAGE Bacteria; Actinobacteria; Acidimicrobidae; Acidimicrobiales; Acidimicrobineae; Acidimicrobiaceae; Acidimicrobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013124 LENGTH 2158157 STATISTICS Number of nucleotides: 2158157 Number of protein genes: 1964 Number of RNA genes: 57 /// ENTRY T00957 Complete Genome NAME ami, A.mirum, 446462 DEFINITION Actinosynnema mirum DSM 43827 ANNOTATION KOALA TAXONOMY TAX:446462 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Actinosynnemataceae; Actinosynnema DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013093 LENGTH 8248144 STATISTICS Number of nucleotides: 8248144 Number of protein genes: 6916 Number of RNA genes: 79 /// ENTRY T00958 Complete Genome NAME sms, S.muelleri_SMDSEM, 595499 DEFINITION Candidatus Sulcia muelleri SMDSEM ANNOTATION manual TAXONOMY TAX:595499 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Candidatus Sulcia DATA_SOURCE RefSeq ORIGINAL_DB U Arizona CHROMOSOME Circular SEQUENCE RS:NC_013123 LENGTH 276984 STATISTICS Number of nucleotides: 276984 Number of protein genes: 242 Number of RNA genes: 33 REFERENCE PMID:19706397 AUTHORS McCutcheon JP, et al. TITLE Convergent evolution of metabolic roles in bacterial co-symbionts of insects. JOURNAL Proc Natl Acad Sci U S A 106:15394-9 (2009) /// ENTRY T00959 Complete Genome NAME cpi, C.pinensis, 485918 DEFINITION Chitinophaga pinensis DSM 2588 ANNOTATION KOALA TAXONOMY TAX:485918 LINEAGE Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Chitinophagaceae; Chitinophaga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013132 LENGTH 9127347 STATISTICS Number of nucleotides: 9127347 Number of protein genes: 7192 Number of RNA genes: 98 /// ENTRY T00960 Complete Genome NAME ctj, C.trachomatis_Jali20, 580049 DEFINITION Chlamydia trachomatis ANNOTATION manual TAXONOMY TAX:580049 LINEAGE Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_012686 LENGTH 1044352 STATISTICS Number of nucleotides: 1044352 Number of protein genes: 875 REFERENCE PMID:19460133 AUTHORS Seth-Smith HM, et al. TITLE Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain. JOURNAL BMC Genomics 10:239 (2009) /// ENTRY T00961 Complete Genome NAME coc, C.ochracea, CAPOC, 521097 DEFINITION Capnocytophaga ochracea DSM 7271 ANNOTATION manual TAXONOMY TAX:521097 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Flavobacteriaceae; Capnocytophaga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013162 LENGTH 2612925 STATISTICS Number of nucleotides: 2612925 Number of protein genes: 2171 Number of RNA genes: 62 /// ENTRY T00962 Complete Genome NAME ccu, C.curtum, 469378 DEFINITION Cryptobacterium curtum DSM 15641 ANNOTATION KOALA TAXONOMY TAX:469378 LINEAGE Bacteria; Actinobacteria; Coriobacteridae; Coriobacteriales; Coriobacterineae; Coriobacteriaceae; Cryptobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013170 LENGTH 1617804 STATISTICS Number of nucleotides: 1617804 Number of protein genes: 1357 Number of RNA genes: 58 /// ENTRY T00963 Complete Genome NAME dba, D.baculatum, DESBA, 525897 DEFINITION Desulfomicrobium baculatum DSM 4028 ANNOTATION KOALA TAXONOMY TAX:525897 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013173 LENGTH 3942657 STATISTICS Number of nucleotides: 3942657 Number of protein genes: 3436 Number of RNA genes: 75 /// ENTRY T00964 Complete Genome NAME apr, A.prevotii, 525919 DEFINITION Anaerococcus prevotii DSM 20548 ANNOTATION KOALA TAXONOMY TAX:525919 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis; Anaerococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013171 LENGTH 1883067 PLASMID pAPRE01; Circular SEQUENCE RS:NC_013164 LENGTH 115566 STATISTICS Number of nucleotides: 1998633 Number of protein genes: 1806 Number of RNA genes: 64 /// ENTRY T00965 Complete Genome NAME bfa, B.faecium, 446465 DEFINITION Brachybacterium faecium DSM 4810 ANNOTATION KOALA TAXONOMY TAX:446465 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Dermabacteraceae; Brachybacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013172 LENGTH 3614992 STATISTICS Number of nucleotides: 3614992 Number of protein genes: 3068 Number of RNA genes: 61 /// ENTRY T00966 Complete Genome NAME app, A.phosphatis, 522306 DEFINITION Candidatus Accumulibacter phosphatis clade IIA UW-1 ANNOTATION manual TAXONOMY TAX:522306 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013194 LENGTH 5058518 PLASMID pAph01; Circular SEQUENCE RS:NC_013193 LENGTH 167595 PLASMID pAph02; Circular SEQUENCE RS:NC_013190 LENGTH 42325 PLASMID pAph03; Circular SEQUENCE RS:NC_013191 LENGTH 37695 STATISTICS Number of nucleotides: 5306133 Number of protein genes: 4562 Number of RNA genes: 58 /// ENTRY T00967 Complete Genome NAME cai, C.acidiphila, 479433 DEFINITION Catenulispora acidiphila DSM 44928 ANNOTATION KOALA TAXONOMY TAX:479433 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Catenulisporineae; Catenulisporaceae; Catenulispora DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013131 LENGTH 10467782 STATISTICS Number of nucleotides: 10467782 Number of protein genes: 8913 Number of RNA genes: 72 /// ENTRY T00968 Complete Genome NAME cyh, Cyanothece_PCC8802, 395962 DEFINITION Cyanothece sp. PCC 8802 ANNOTATION KOALA TAXONOMY TAX:395962 LINEAGE Bacteria; Cyanobacteria; Chroococcales; Cyanothece DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013161 LENGTH 4669813 PLASMID pP880201; Circular SEQUENCE RS:NC_013160 LENGTH 75678 PLASMID pP880202; Circular SEQUENCE RS:NC_013163 LENGTH 23870 PLASMID pP880203; Circular SEQUENCE RS:NC_013167 LENGTH 22723 PLASMID pP880204; Circular SEQUENCE RS:NC_013168 LENGTH 11263 STATISTICS Number of nucleotides: 4803347 Number of protein genes: 4444 Number of RNA genes: 52 /// ENTRY T00969 Complete Genome NAME dsa, D.salexigens, DESSA, 526222 DEFINITION Desulfovibrio salexigens DSM 2638 ANNOTATION KOALA TAXONOMY TAX:526222 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012881 LENGTH 4289847 STATISTICS Number of nucleotides: 4289847 Number of protein genes: 3807 Number of RNA genes: 108 /// ENTRY T00970 Complete Genome NAME dfe, D.fermentans, 471854 DEFINITION Dyadobacter fermentans DSM 18053 ANNOTATION KOALA TAXONOMY TAX:471854 LINEAGE Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Flexibacteraceae; Dyadobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013037 LENGTH 6967790 STATISTICS Number of nucleotides: 6967790 Number of protein genes: 5719 Number of RNA genes: 51 /// ENTRY T00971 Complete Genome NAME hut, H.utahensis, 519442 DEFINITION Halorhabdus utahensis DSM 12940 ANNOTATION manual TAXONOMY TAX:519442 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013158 LENGTH 3116795 STATISTICS Number of nucleotides: 3116795 Number of protein genes: 2998 Number of RNA genes: 50 /// ENTRY T00972 Complete Genome NAME jde, J.denitrificans, 471856 DEFINITION Jonesia denitrificans DSM 20603 ANNOTATION KOALA TAXONOMY TAX:471856 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Jonesiaceae; Jonesia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013174 LENGTH 2749646 STATISTICS Number of nucleotides: 2749646 Number of protein genes: 2511 Number of RNA genes: 80 /// ENTRY T00973 Complete Genome NAME kko, K.koreensis, 523791 DEFINITION Kangiella koreensis DSM 16069 ANNOTATION KOALA TAXONOMY TAX:523791 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Kangiella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013166 LENGTH 2852073 STATISTICS Number of nucleotides: 2852073 Number of protein genes: 2632 Number of RNA genes: 51 /// ENTRY T00974 Complete Genome NAME kse, K.sedentarius, 478801 DEFINITION Kytococcus sedentarius DSM 20547 ANNOTATION KOALA TAXONOMY TAX:478801 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Dermacoccaceae; Kytococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013169 LENGTH 2785024 STATISTICS Number of nucleotides: 2785024 Number of protein genes: 2554 Number of RNA genes: 55 /// ENTRY T00975 Complete Genome NAME lba, L.buccalis, 523794 DEFINITION Leptotrichia buccalis DSM 1135 ANNOTATION KOALA TAXONOMY TAX:523794 LINEAGE Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Leptotrichia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013192 LENGTH 2465610 STATISTICS Number of nucleotides: 2465610 Number of protein genes: 2220 Number of RNA genes: 64 /// ENTRY T00976 Complete Genome NAME mfe, M.fervens, 573064 DEFINITION Methanocaldococcus fervens AG86 ANNOTATION KOALA TAXONOMY TAX:573064 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013156 LENGTH 1485061 PLASMID pMEFER01; Circular SEQUENCE RS:NC_013157 LENGTH 22190 STATISTICS Number of nucleotides: 1507251 Number of protein genes: 1581 Number of RNA genes: 45 /// ENTRY T00977 Complete Genome NAME pjd, Paenibacillus, 324057 DEFINITION Paenibacillus sp. JDR-2 ANNOTATION KOALA TAXONOMY TAX:324057 LINEAGE Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Paenibacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_012914 LENGTH 7184930 STATISTICS Number of nucleotides: 7184930 Number of protein genes: 6213 Number of RNA genes: 126 /// ENTRY T00978 Complete Genome NAME phe, P.heparinus, PEDHE, 485917 DEFINITION Pedobacter heparinus DSM 2366 ANNOTATION KOALA TAXONOMY TAX:485917 LINEAGE Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Sphingobacteriaceae; Pedobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013061 LENGTH 5167383 STATISTICS Number of nucleotides: 5167383 Number of protein genes: 4252 Number of RNA genes: 52 /// ENTRY T00979 Complete Genome NAME raf, R.africae, RICAE, 347255 DEFINITION Rickettsia africae ESF-5 ANNOTATION KOALA TAXONOMY TAX:347255 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group DATA_SOURCE RefSeq ORIGINAL_DB U Mediterranee CHROMOSOME Circular SEQUENCE RS:NC_012633 LENGTH 1278540 PLASMID pRAF; Circular SEQUENCE RS:NC_012634 LENGTH 12377 STATISTICS Number of nucleotides: 1290917 Number of protein genes: 1041 Number of RNA genes: 39 REFERENCE PMID:19379498 AUTHORS Fournier PE, et al. TITLE Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction. JOURNAL BMC Genomics 10:166 (2009) /// ENTRY T00980 Complete Genome NAME svi, S.viridis, 471857 DEFINITION Saccharomonospora viridis DSM 43017 ANNOTATION KOALA TAXONOMY TAX:471857 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Pseudonocardiaceae; Saccharomonospora DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013159 LENGTH 4308349 STATISTICS Number of nucleotides: 4308349 Number of protein genes: 3828 Number of RNA genes: 58 /// ENTRY T00981 Complete Genome NAME shi, S.heliotrinireducens, 471855 DEFINITION Slackia heliotrinireducens DSM 20476 ANNOTATION KOALA TAXONOMY TAX:471855 LINEAGE Bacteria; Actinobacteria; Coriobacteridae; Coriobacteriales; Coriobacterineae; Coriobacteriaceae; Slackia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013165 LENGTH 3165038 STATISTICS Number of nucleotides: 3165038 Number of protein genes: 2765 Number of RNA genes: 56 /// ENTRY T00982 Complete Genome NAME hmu, H.mukohataei, 485914 DEFINITION Halomicrobium mukohataei DSM 12286 ANNOTATION KOALA TAXONOMY TAX:485914 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013202 LENGTH 3110487 PLASMID pHmuk01; Circular SEQUENCE RS:NC_013201 LENGTH 221862 STATISTICS Number of nucleotides: 3332349 Number of protein genes: 3349 Number of RNA genes: 60 /// ENTRY T00983 Complete Genome NAME apv, A.parvulum, 521095 DEFINITION Atopobium parvulum DSM 20469 ANNOTATION KOALA TAXONOMY TAX:521095 LINEAGE Bacteria; Actinobacteria; Coriobacteridae; Coriobacteriales; Coriobacterineae; Coriobacteriaceae; Atopobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013203 LENGTH 1543805 STATISTICS Number of nucleotides: 1543805 Number of protein genes: 1353 Number of RNA genes: 53 /// ENTRY T00984 Complete Genome NAME ele, E.lenta, 479437 DEFINITION Eggerthella lenta DSM 2243 ANNOTATION KOALA TAXONOMY TAX:479437 LINEAGE Bacteria; Actinobacteria; Coriobacteridae; Coriobacteriales; Coriobacterineae; Coriobacteriaceae; Eggerthella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013204 LENGTH 3632260 STATISTICS Number of nucleotides: 3632260 Number of protein genes: 3070 Number of RNA genes: 61 /// ENTRY T00985 Complete Genome NAME aac, A.acidocaldarius, 521098 DEFINITION Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 ANNOTATION KOALA TAXONOMY TAX:521098 LINEAGE Bacteria; Firmicutes; Bacillales; Alicyclobacillaceae; Alicyclobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013205 LENGTH 3018755 PLASMID pAACI01; Circular SEQUENCE RS:NC_013206 LENGTH 91726 PLASMID pAACI02; Circular SEQUENCE RS:NC_013207 LENGTH 87298 PLASMID pAACI03; Circular SEQUENCE RS:NC_013208 LENGTH 7907 STATISTICS Number of nucleotides: 3205686 Number of protein genes: 3084 Number of RNA genes: 85 /// ENTRY T00986 Complete Genome NAME dae, D.acetoxidans, 485916 DEFINITION Desulfotomaculum acetoxidans DSM 771 ANNOTATION KOALA TAXONOMY TAX:485916 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013216 LENGTH 4545624 STATISTICS Number of nucleotides: 4545624 Number of protein genes: 4068 Number of RNA genes: 101 /// ENTRY T00987 Complete Genome NAME lrh, L.rhamnosus, 568703 DEFINITION Lactobacillus rhamnosus GG ANNOTATION KOALA TAXONOMY TAX:568703 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB U Helsinki CHROMOSOME Circular SEQUENCE RS:NC_013198 LENGTH 3010111 STATISTICS Number of nucleotides: 3010111 Number of protein genes: 2944 REFERENCE PMID:19805152 AUTHORS Kankainen M, et al. TITLE Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein. JOURNAL Proc Natl Acad Sci U S A 106:17193-8 (2009) /// ENTRY T00988 Complete Genome NAME apt, A.pasteurianus, 634452 DEFINITION Acetobacter pasteurianus IFO 3283-01 ANNOTATION KOALA TAXONOMY TAX:634452 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter DATA_SOURCE RefSeq ORIGINAL_DB Yamaguchi U CHROMOSOME Circular SEQUENCE RS:NC_013209 LENGTH 2907495 PLASMID pAPA01-011; Circular SEQUENCE RS:NC_013210 LENGTH 191799 PLASMID pAPA01-020; Circular SEQUENCE RS:NC_013211 LENGTH 182940 PLASMID pAPA01-030; Circular SEQUENCE RS:NC_013212 LENGTH 49961 PLASMID pAPA01-040; Circular SEQUENCE RS:NC_013213 LENGTH 3204 PLASMID pAPA01-050; Circular SEQUENCE RS:NC_013214 LENGTH 3035 PLASMID pAPA01-060; Circular SEQUENCE RS:NC_013215 LENGTH 1815 STATISTICS Number of nucleotides: 3340249 Number of protein genes: 3050 Number of RNA genes: 72 REFERENCE PMID:19638423 AUTHORS Azuma Y, et al. TITLE Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus. JOURNAL Nucleic Acids Res 37:5768-83 (2009) /// ENTRY T00989 Complete Genome NAME drt, D.retbaense, 485915 DEFINITION Desulfohalobium retbaense DSM 5692 ANNOTATION KOALA TAXONOMY TAX:485915 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae; Desulfohalobium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013223 LENGTH 2864304 PLASMID pDRET01; Circular SEQUENCE RS:NC_013224 LENGTH 45263 STATISTICS Number of nucleotides: 2909567 Number of protein genes: 2526 Number of RNA genes: 60 /// ENTRY T00990 Complete Genome NAME lrl, L.rhamnosus_Lc705, 568704 DEFINITION Lactobacillus rhamnosus Lc 705 ANNOTATION KOALA TAXONOMY TAX:568704 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB U Helsinki CHROMOSOME Circular SEQUENCE RS:NC_013199 LENGTH 2968598 PLASMID pLC1; Circular SEQUENCE RS:NC_013200 LENGTH 64508 STATISTICS Number of nucleotides: 3033106 Number of protein genes: 2992 REFERENCE PMID:19805152 AUTHORS Kankainen M, et al. TITLE Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein. JOURNAL Proc Natl Acad Sci U S A 106:17193-8 (2009) /// ENTRY T00991 Complete Genome NAME nml, N.multipartita, 479431 DEFINITION Nakamurella multipartita DSM 44233 ANNOTATION KOALA TAXONOMY TAX:479431 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Nakamurellaceae; Nakamurella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013235 LENGTH 6060298 STATISTICS Number of nucleotides: 6060298 Number of protein genes: 5240 Number of RNA genes: 56 /// ENTRY T00992 Complete Genome NAME rbi, R.biformata, 313596 DEFINITION Robiginitalea biformata HTCC2501 ANNOTATION KOALA TAXONOMY TAX:313596 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Flavobacteriaceae; Robiginitalea DATA_SOURCE RefSeq ORIGINAL_DB Inha U CHROMOSOME Circular SEQUENCE RS:NC_013222 LENGTH 3530383 STATISTICS Number of nucleotides: 3530383 Number of protein genes: 3209 Number of RNA genes: 46 REFERENCE PMID:19767438 AUTHORS Oh HM, et al. TITLE Complete genome sequence of Robiginitalea biformata HTCC2501. JOURNAL J Bacteriol 191:7144-5 (2009) /// ENTRY T00993 Complete Genome NAME aat, A.actinomycetemcomitans, 668336 DEFINITION Aggregatibacter actinomycetemcomitans D11S-1 ANNOTATION manual TAXONOMY TAX:668336 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter DATA_SOURCE RefSeq ORIGINAL_DB USC CHROMOSOME Circular SEQUENCE RS:NC_013416 LENGTH 2105764 STATISTICS Number of nucleotides: 2105764 Number of protein genes: 2134 Number of RNA genes: 73 REFERENCE PMID:19820097 AUTHORS Chen C, et al. TITLE Genome sequence of Aggregatibacter actinomycetemcomitans serotype c strain D11S-1. JOURNAL J Bacteriol 191:7378-9 (2009) /// ENTRY T00994 Complete Genome NAME adg, A.degensii, 429009 DEFINITION Ammonifex degensii KC4 ANNOTATION KOALA TAXONOMY TAX:429009 LINEAGE Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013385 LENGTH 2129237 PLASMID pADEG01; Circular SEQUENCE RS:NC_013386 LENGTH 27830 STATISTICS Number of nucleotides: 2157067 Number of protein genes: 2080 Number of RNA genes: 58 /// ENTRY T00995 Complete Genome NAME bbl, Blattabacterium_Blattella_germanica, 331104 DEFINITION Blattabacterium sp. (Blattella germanica) Bge ANNOTATION manual TAXONOMY TAX:331104 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Blattabacteriaceae; Blattabacterium DATA_SOURCE RefSeq ORIGINAL_DB Valencia CHROMOSOME Circular SEQUENCE RS:NC_013454 LENGTH 636850 STATISTICS Number of nucleotides: 636850 Number of protein genes: 586 Number of RNA genes: 40 REFERENCE PMID:19911043 AUTHORS Lopez-Sanchez MJ, et al. TITLE Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica. JOURNAL PLoS Genet 5:e1000721 (2009) /// ENTRY T00996 Complete Genome NAME bpi, Blattabacterium_Periplaneta_americana, 600809 DEFINITION Blattabacterium sp. (Periplaneta americana) BPLAN ANNOTATION KOALA TAXONOMY TAX:600809 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Blattabacteriaceae; Blattabacterium DATA_SOURCE RefSeq ORIGINAL_DB U Arizona CHROMOSOME Circular SEQUENCE RS:NC_013418 LENGTH 636994 PLASMID pBPLAN; Circular SEQUENCE RS:NC_013419 LENGTH 3448 STATISTICS Number of nucleotides: 640442 Number of protein genes: 580 Number of RNA genes: 37 REFERENCE PMID:19880743 AUTHORS Sabree ZL, et al. TITLE Nitrogen recycling and nutritional provisioning by Blattabacterium, the cockroach endosymbiont. JOURNAL Proc Natl Acad Sci U S A 106:19521-6 (2009) /// ENTRY T00997 Complete Genome NAME cdc, C.difficile_CD196, 645462 DEFINITION Clostridium difficile CD196 ANNOTATION KOALA TAXONOMY TAX:645462 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_013315 LENGTH 4110554 STATISTICS Number of nucleotides: 4110554 Number of protein genes: 3454 Number of RNA genes: 111 /// ENTRY T00998 Complete Genome NAME cdl, C.difficile_R20291, 645463 DEFINITION Clostridium difficile R20291 ANNOTATION KOALA TAXONOMY TAX:645463 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_013316 LENGTH 4191339 STATISTICS Number of nucleotides: 4191339 Number of protein genes: 3507 Number of RNA genes: 27 /// ENTRY T00999 Complete Genome NAME ctu, C.turicensis, 413502 DEFINITION Cronobacter turicensis ANNOTATION KOALA TAXONOMY TAX:413502 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cronobacter DATA_SOURCE RefSeq ORIGINAL_DB TUM CHROMOSOME Circular SEQUENCE RS:NC_013282 LENGTH 4384526 PLASMID pCTU1; Circular SEQUENCE RS:NC_013283 LENGTH 138339 PLASMID pCTU2; Circular SEQUENCE RS:NC_013284 LENGTH 22448 PLASMID pCTU3; Circular SEQUENCE RS:NC_013285 LENGTH 53842 STATISTICS Number of nucleotides: 4599155 Number of protein genes: 4455 Number of RNA genes: 112 /// ENTRY T01000 Complete Genome NAME epy, E.pyrifoliae, 634499 DEFINITION Erwinia pyrifoliae Ep1/96 ANNOTATION KOALA TAXONOMY TAX:634499 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia DATA_SOURCE RefSeq ORIGINAL_DB Max-Planck CHROMOSOME Circular SEQUENCE RS:NC_012214 LENGTH 4026322 PLASMID pEP36; Circular SEQUENCE RS:NC_013263 LENGTH 35909 PLASMID pEP03; Circular SEQUENCE RS:NC_013264 LENGTH 3070 PLASMID pEP05; Circular SEQUENCE RS:NC_013265 LENGTH 4955 PLASMID pEP2.6; Circular SEQUENCE RS:NC_013954 LENGTH 2590 STATISTICS Number of nucleotides: 4072846 Number of protein genes: 3697 Number of RNA genes: 97 /// ENTRY T01001 Complete Genome NAME hsa, H.sapiens, HUMAN, 9606 DEFINITION Homo sapiens (human) ANNOTATION manual TAXONOMY TAX:9606 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo DATA_SOURCE RefSeq ORIGINAL_DB NCBI OMIM HGNC HPRD Ensembl STATISTICS Number of protein genes: 25680 Number of RNA genes: 24 REFERENCE PMID:11237011 AUTHORS Lander ES, et al. TITLE Initial sequencing and analysis of the human genome. JOURNAL Nature 409:860-921 (2001) REFERENCE PMID:11181995 AUTHORS Venter JC, et al. TITLE The sequence of the human genome. JOURNAL Science 291:1304-51 (2001) REFERENCE PMID:15496913 AUTHORS International Human Genome Sequencing Consortium. TITLE Finishing the euchromatic sequence of the human genome. JOURNAL Nature 431:931-45 (2004) REFERENCE PMID:16710414 (chromosome 1) AUTHORS Gregory SG, et al. TITLE The DNA sequence and biological annotation of human chromosome 1. JOURNAL Nature 441:315-321 (2006) REFERENCE PMID:15815621 (chromosomes 2 and 4) AUTHORS Hillier LW, et al. TITLE Generation and annotation of the DNA sequences of human chromosomes 2 and 4. JOURNAL Nature 434:724-31 (2005) REFERENCE PMID:16641997 (chromosome 3) AUTHORS Muzny DM, et al. TITLE The DNA sequence, annotation and analysis of human chromosome 3. JOURNAL Nature 440:1194-8 (2006) REFERENCE PMID:15372022 (chromosome 5) AUTHORS Schmutz J, et al. TITLE The DNA sequence and comparative analysis of human chromosome 5. JOURNAL Nature 431:268-74 (2004) REFERENCE PMID:14574404 (chromosome 6) AUTHORS Mungall AJ, et al. TITLE The DNA sequence and analysis of human chromosome 6. JOURNAL Nature 425:805-11 (2003) REFERENCE PMID:12690205 (chromosome 7) AUTHORS Scherer SW, et al. TITLE Human chromosome 7: DNA sequence and biology. JOURNAL Science 300:767-72 (2003) REFERENCE PMID:12853948 (chromosome 7) AUTHORS Hillier LW, et al. TITLE The DNA sequence of human chromosome 7. JOURNAL Nature 424:157-64 (2003) REFERENCE PMID:16421571 (chromosome 8) AUTHORS Nusbaum C, et al. TITLE DNA sequence and analysis of human chromosome 8. JOURNAL Nature 439:331-5 (2006) REFERENCE PMID:15164053 (chromosome 9) AUTHORS Humphray SJ, et al. TITLE DNA sequence and analysis of human chromosome 9. JOURNAL Nature 429:369-74 (2004) REFERENCE PMID:15164054 (chromosome 10) AUTHORS Deloukas P, et al. TITLE The DNA sequence and comparative analysis of human chromosome 10. JOURNAL Nature 429:375-81 (2004) REFERENCE PMID:16554811 (chromosome 11) AUTHORS Taylor TD, et al. TITLE Human chromosome 11 DNA sequence and analysis including novel gene identification. JOURNAL Nature 440:497-500 (2006) REFERENCE PMID:16541075 (chromosome 12) AUTHORS Scherer SE, et al. TITLE The finished DNA sequence of human chromosome 12. JOURNAL Nature 440:346-51 (2006) REFERENCE PMID:15057823 (chromosome 13) AUTHORS Dunham A, et al. TITLE The DNA sequence and analysis of human chromosome 13. JOURNAL Nature 428:522-8 (2004) REFERENCE PMID:12508121 (chromosome 14) AUTHORS Heilig R, et al. TITLE The DNA sequence and analysis of human chromosome 14. JOURNAL Nature 421:601-7 (2003) REFERENCE PMID:16572171 (chromosome 15) AUTHORS Zody MC, et al. TITLE Analysis of the DNA sequence and duplication history of human chromosome 15. JOURNAL Nature 440:671-5 (2006) REFERENCE PMID:15616553 (chromosome 16) AUTHORS Martin J, et al. TITLE The sequence and analysis of duplication-rich human chromosome 16. JOURNAL Nature 432:988-94 (2004) REFERENCE PMID:16625196 (chromosome 17) AUTHORS Zody MC, et al. TITLE DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. JOURNAL Nature 440:1045-9 (2006) REFERENCE PMID:16177791 (chromosome 18) AUTHORS Nusbaum C, et al. TITLE DNA sequence and analysis of human chromosome 18. JOURNAL Nature 437:551-5 (2005) REFERENCE PMID:15057824 (chromosome 19) AUTHORS Grimwood J, et al. TITLE The DNA sequence and biology of human chromosome 19. JOURNAL Nature 428:529-35 (2004) REFERENCE PMID:11780052 (chromosome 20) AUTHORS Deloukas P, et al. TITLE The DNA sequence and comparative analysis of human chromosome 20. JOURNAL Nature 414:865-71 (2001) REFERENCE PMID:10830953 (chromosome 21) AUTHORS Hattori M, et al. TITLE The DNA sequence of human chromosome 21. JOURNAL Nature 405:311-9 (2000) REFERENCE PMID:10591208 (chromosome 22) AUTHORS Dunham I, et al. TITLE The DNA sequence of human chromosome 22. JOURNAL Nature 402:489-95 (1999) REFERENCE PMID:15772651 (chromosome X) AUTHORS Ross MT, et al. TITLE The DNA sequence of the human X chromosome. JOURNAL Nature 434:325-37 (2005) REFERENCE PMID:12815422 (chromosome Y) AUTHORS Skaletsky H, et al. TITLE The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. JOURNAL Nature 423:825-37 (2003) /// ENTRY T01002 Complete Genome NAME mmu, M.musculus, MOUSE, 10090 DEFINITION Mus musculus (house mouse) ANNOTATION manual TAXONOMY TAX:10090 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus DATA_SOURCE RefSeq ORIGINAL_DB MGI Ensembl STATISTICS Number of protein genes: 29311 Number of RNA genes: 24 REFERENCE PMID:12466850 AUTHORS Waterston RH, et al. TITLE Initial sequencing and comparative analysis of the mouse genome. JOURNAL Nature 420:520-62 (2002) /// ENTRY T01003 Complete Genome NAME rno, R.norvegicus, RAT, 10116 DEFINITION Rattus norvegicus (Norway rat) ANNOTATION manual TAXONOMY TAX:10116 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus DATA_SOURCE RefSeq ORIGINAL_DB RGD RATMAP Ensembl STATISTICS Number of protein genes: 26157 Number of RNA genes: 24 REFERENCE PMID:15057822 AUTHORS Gibbs RA, et al. TITLE Genome sequence of the Brown Norway rat yields insights into mammalian evolution. JOURNAL Nature 428:493-521 (2004) /// ENTRY T01004 Complete Genome NAME dre, D.rerio, DANRE, 7955 DEFINITION Danio rerio (zebrafish) ANNOTATION manual TAXONOMY TAX:7955 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio DATA_SOURCE RefSeq ORIGINAL_DB Sanger ZFIN Ensembl STATISTICS Number of protein genes: 27234 Number of RNA genes: 24 /// ENTRY T01005 Complete Genome NAME ptr, P.troglodytes, PANTR, 9598 DEFINITION Pan troglodytes (chimpanzee) ANNOTATION manual TAXONOMY TAX:9598 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan DATA_SOURCE RefSeq STATISTICS Number of protein genes: 25175 Number of RNA genes: 26 REFERENCE PMID:16136131 AUTHORS Chimpanzee Sequencing and Analysis Consortium. TITLE Initial sequence of the chimpanzee genome and comparison with the human genome. JOURNAL Nature 437:69-87 (2005) REFERENCE PMID:15164055 (chromosome 22) AUTHORS Watanabe H, et al. TITLE DNA sequence and comparative analysis of chimpanzee chromosome 22. JOURNAL Nature 429:382-8 (2004) REFERENCE PMID:16388311 (chromosome Y) AUTHORS Kuroki Y, et al. TITLE Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway. JOURNAL Nat Genet 38:158-67 (2006) /// ENTRY T01006 Complete Genome NAME gga, G.gallus, CHICK, 9031 DEFINITION Gallus gallus (chicken) ANNOTATION manual TAXONOMY TAX:9031 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus DATA_SOURCE RefSeq STATISTICS Number of protein genes: 18130 Number of RNA genes: 24 REFERENCE PMID:15592404 AUTHORS Hillier LW, et al. TITLE Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. JOURNAL Nature 432:695-716 (2004) /// ENTRY T01007 Complete Genome NAME cfa, C.familiaris, CANFA, 9615 DEFINITION Canis lupus familiaris (dog) ANNOTATION manual TAXONOMY TAX:9615 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis DATA_SOURCE RefSeq STATISTICS Number of protein genes: 19835 Number of RNA genes: 26 REFERENCE PMID:16341006 AUTHORS Lindblad-Toh K, et al. TITLE Genome sequence, comparative analysis and haplotype structure of the domestic dog. JOURNAL Nature 438:803-19 (2005) REFERENCE PMID:14512627 AUTHORS Kirkness EF, et al. TITLE The dog genome: survey sequencing and comparative analysis. JOURNAL Science 301:1898-903 (2003) /// ENTRY T01008 Complete Genome NAME bta, B.taurus, BOVIN, 9913 DEFINITION Bos taurus (cow) ANNOTATION manual TAXONOMY TAX:9913 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos DATA_SOURCE RefSeq STATISTICS Number of protein genes: 22368 Number of RNA genes: 24 REFERENCE PMID:19390049 AUTHORS Elsik CG, et al. TITLE The genome sequence of taurine cattle: a window to ruminant biology and evolution. JOURNAL Science 324:522-8 (2009) /// ENTRY T01009 Complete Genome NAME ssc, S.scrofa, PIG, 9823 DEFINITION Sus scrofa (pig) ANNOTATION manual TAXONOMY TAX:9823 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus DATA_SOURCE RefSeq STATISTICS Number of protein genes: 7418 Number of RNA genes: 24 REFERENCE PMID:15885146 AUTHORS Wernersson R, et al. TITLE Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. JOURNAL BMC Genomics 6:70 (2005) /// ENTRY T01010 Complete Genome NAME xla, X.laevis, XENLA, 8355 DEFINITION Xenopus laevis (African clawed frog) ANNOTATION manual TAXONOMY TAX:8355 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus DATA_SOURCE RefSeq ORIGINAL_DB Xenbase STATISTICS Number of protein genes: 10894 Number of RNA genes: 24 /// ENTRY T01011 Complete Genome NAME xtr, X.tropicalis, XENTR, 8364 DEFINITION Xenopus (Silurana) tropicalis (western clawed frog) ANNOTATION manual TAXONOMY TAX:8364 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana DATA_SOURCE RefSeq ORIGINAL_DB Xenbase JGI Ensembl STATISTICS Number of protein genes: 8741 Number of RNA genes: 24 /// ENTRY T01012 Complete Genome NAME tcr, T.cruzi, TRYCR, 353153 DEFINITION Trypanosoma cruzi CL Brener ANNOTATION manual TAXONOMY TAX:353153 LINEAGE Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum DATA_SOURCE RefSeq ORIGINAL_DB TIGR DISEASE Chagas disease STATISTICS Number of protein genes: 19607 REFERENCE PMID:16020725 AUTHORS El-Sayed NM, et al. TITLE The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. JOURNAL Science 309:409-15 (2005) /// ENTRY T01013 Complete Genome NAME tbr, T.brucei, 185431 DEFINITION Trypanosoma brucei TREU927 ANNOTATION manual TAXONOMY TAX:185431 LINEAGE Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma DATA_SOURCE RefSeq ORIGINAL_DB Sanger DISEASE Sleeping sickness, Gambian trypanosomiasis STATISTICS Number of protein genes: 8712 REFERENCE PMID:16020726 AUTHORS Berriman M, et al. TITLE The genome of the African trypanosome Trypanosoma brucei. JOURNAL Science 309:416-22 (2005) /// ENTRY T01014 Complete Genome NAME lma, L.major, LEIMA, 347515 DEFINITION Leishmania major Friedlin ANNOTATION manual TAXONOMY TAX:347515 LINEAGE Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmania DATA_SOURCE RefSeq ORIGINAL_DB Sanger SBRI DISEASE Leishmaniases STATISTICS Number of protein genes: 8265 REFERENCE PMID:16020728 AUTHORS Ivens AC, et al. TITLE The genome of the kinetoplastid parasite, Leishmania major. JOURNAL Science 309:436-42 (2005) REFERENCE PMID:10077609 (chromosome 1) AUTHORS Myler PJ, et al. TITLE Leishmania major Friedlin chromosome 1 has an unusual distribution of protein-coding genes. JOURNAL Proc Natl Acad Sci U S A 96:2902-6 (1999) REFERENCE PMID:12853638 (chromosome 3) AUTHORS Worthey EA, et al. TITLE Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene. JOURNAL Nucleic Acids Res 31:4201-10 (2003) /// ENTRY T01015 Complete Genome NAME osa, O.sativa, ORYSJ, 39947 DEFINITION Oryza sativa ssp. japonica cultivar Nipponbare (Japanese rice) ANNOTATION manual TAXONOMY TAX:39947 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza DATA_SOURCE RefSeq ORIGINAL_DB RAP-DB CHROMOSOME 1 SEQUENCE RS:NC_008394 LENGTH 43261740 CHROMOSOME 2 SEQUENCE RS:NC_008395 LENGTH 35954743 CHROMOSOME 3 SEQUENCE RS:NC_008396 LENGTH 36192742 CHROMOSOME 4 SEQUENCE RS:NC_008397 LENGTH 35498469 CHROMOSOME 5 SEQUENCE RS:NC_008398 LENGTH 29737217 CHROMOSOME 6 SEQUENCE RS:NC_008399 LENGTH 30731886 CHROMOSOME 7 SEQUENCE RS:NC_008400 LENGTH 29644043 CHROMOSOME 8 SEQUENCE RS:NC_008401 LENGTH 28434780 CHROMOSOME 9 SEQUENCE RS:NC_008402 LENGTH 22696651 CHROMOSOME 10 SEQUENCE RS:NC_008403 LENGTH 22685906 CHROMOSOME 11 SEQUENCE RS:NC_008404 LENGTH 28386948 CHROMOSOME 12 SEQUENCE RS:NC_008405 LENGTH 27566993 CHROMOSOME CP (chloroplast); Circular SEQUENCE RS:NC_001320 LENGTH 134525 CHROMOSOME MT (mitochondrion); Circular SEQUENCE RS:NC_011033 LENGTH 490520 STATISTICS Number of nucleotides: 371417163 Number of protein genes: 26937 Number of RNA genes: 1725 REFERENCE PMID:16100779 AUTHORS International Rice Genome Sequencing Project. TITLE The map-based sequence of the rice genome. JOURNAL Nature 436:793-800 (2005) REFERENCE PMID:12447438 (chromosome 1) AUTHORS Sasaki T, et al. TITLE The genome sequence and structure of rice chromosome 1. JOURNAL Nature 420:312-316 (2002) REFERENCE PMID:16109971 (chromosome 3) AUTHORS Buell CR, et al. TITLE Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. JOURNAL Genome Res 15:1284-91 (2005) REFERENCE PMID:12447439 (chromosome 4) AUTHORS Feng Q, et al. TITLE Sequence and analysis of rice chromosome 4. JOURNAL Nature 420:316-320 (2002) REFERENCE PMID:12791992 (chromosome 10) AUTHORS Rice Chromosome 10 Sequencing Consortium. TITLE In-depth view of structure, activity, and evolution of rice chromosome 10. JOURNAL Science 300:1566-9 (2003) REFERENCE PMID:16188032 (chromosomes 11 and 12) AUTHORS Rice Chromosomes 11 and 12 Sequencing Consortia. TITLE The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. JOURNAL BMC Biol 3:20 (2005) /// ENTRY T01016 Complete Genome NAME ani, A.nidulans, EMENI, 227321 DEFINITION Aspergillus nidulans FGSC A4 ANNOTATION manual TAXONOMY TAX:227321 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Emericella DATA_SOURCE RefSeq ORIGINAL_DB Broad STATISTICS Number of protein genes: 9541 REFERENCE PMID:16372000 AUTHORS Galagan JE, et al. TITLE Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. JOURNAL Nature 438:1105-15 (2005) /// ENTRY T01017 Complete Genome NAME afm, A.fumigatus, ASPFU, 330879 DEFINITION Aspergillus fumigatus Af293 ANNOTATION manual TAXONOMY TAX:330879 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus DATA_SOURCE RefSeq ORIGINAL_DB TIGR STATISTICS Number of protein genes: 9630 REFERENCE PMID:16372009 AUTHORS Nierman WC, et al. TITLE Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. JOURNAL Nature 438:1151-6 (2005) /// ENTRY T01018 Complete Genome NAME aor, A.oryzae, ASPOR, 510516 DEFINITION Aspergillus oryzae RIB40 ANNOTATION manual TAXONOMY TAX:510516 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus DATA_SOURCE RefSeq ORIGINAL_DB NITE STATISTICS Number of protein genes: 12074 Number of RNA genes: 25 REFERENCE PMID:16372010 AUTHORS Machida M, et al. TITLE Genome sequencing and analysis of Aspergillus oryzae. JOURNAL Nature 438:1157-61 (2005) /// ENTRY T01019 Complete Genome NAME spu, S.purpuratus, STRPU, 7668 DEFINITION Strongylocentrotus purpuratus (purple sea urchin) ANNOTATION manual TAXONOMY TAX:7668 LINEAGE Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus DATA_SOURCE RefSeq STATISTICS Number of protein genes: 28881 Number of RNA genes: 24 REFERENCE PMID:17095691 AUTHORS Sodergren E, et al. TITLE The genome of the sea urchin Strongylocentrotus purpuratus. JOURNAL Science 314:941-52 (2006) /// ENTRY T01020 Complete Genome NAME tet, T.thermophila, TETTH, 5911 DEFINITION Tetrahymena thermophila SB210, macronuclear genome ANNOTATION manual TAXONOMY TAX:5911 LINEAGE Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Tetrahymenina; Tetrahymenidae; Tetrahymena DATA_SOURCE RefSeq ORIGINAL_DB TGD STATISTICS Number of protein genes: 24770 Number of RNA genes: 14 REFERENCE PMID:16933976 AUTHORS Eisen JA, et al. TITLE Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. JOURNAL PLoS Biol 4:e286 (2006) /// ENTRY T01021 Complete Genome NAME uma, U.maydis, USTMA, 237631 DEFINITION Ustilago maydis 521 ANNOTATION manual TAXONOMY TAX:237631 LINEAGE Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago DATA_SOURCE RefSeq ORIGINAL_DB Broad STATISTICS Number of protein genes: 6538 Number of RNA genes: 24 REFERENCE PMID:17080091 AUTHORS Kamper J, et al. TITLE Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. JOURNAL Nature 444:97-101 (2006) /// ENTRY T01022 Complete Genome NAME tva, T.vaginalis, TRIVA, 412133 DEFINITION Trichomonas vaginalis G3 ANNOTATION manual TAXONOMY TAX:412133 LINEAGE Eukaryota; Parabasalidea; Trichomonada; Trichomonadida; Trichomonadidae; Trichomonadinae; Trichomonas DATA_SOURCE RefSeq ORIGINAL_DB TIGR DISEASE Vaginitis, urethritis and prostatitis STATISTICS Number of protein genes: 59679 REFERENCE PMID:17218520 AUTHORS Carlton JM, et al. TITLE Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. JOURNAL Science 315:207-12 (2007) /// ENTRY T01023 Complete Genome NAME pic, P.stipitis, PICST, 322104 DEFINITION Pichia stipitis CBS 6054 ANNOTATION manual TAXONOMY TAX:322104 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Pichia DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 5816 REFERENCE PMID:17334359 AUTHORS Jeffries TW, et al. TITLE Genome sequence of the lignocellulose-bioconverting and xylose- fermenting yeast Pichia stipitis. JOURNAL Nat Biotechnol 25:319-26 (2007) /// ENTRY T01024 Complete Genome NAME cgr, C.glabrata, 284593 DEFINITION Candida glabrata CBS138 ANNOTATION manual TAXONOMY TAX:284593 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; mitosporic Nakaseomyces DATA_SOURCE RefSeq ORIGINAL_DB Bordeaux DISEASE Candidasis STATISTICS Number of protein genes: 5191 Number of RNA genes: 26 REFERENCE PMID:15229592 AUTHORS Dujon B, et al. TITLE Genome evolution in yeasts. JOURNAL Nature 430:35-44 (2004) /// ENTRY T01025 Complete Genome NAME kla, K.lactis, 284590 DEFINITION Kluyveromyces lactis NRRL Y-1140 ANNOTATION manual TAXONOMY TAX:284590 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces DATA_SOURCE RefSeq ORIGINAL_DB Bordeaux STATISTICS Number of protein genes: 5335 Number of RNA genes: 25 REFERENCE PMID:15229592 AUTHORS Dujon B, et al. TITLE Genome evolution in yeasts. JOURNAL Nature 430:35-44 (2004) /// ENTRY T01026 Complete Genome NAME dha, D.hansenii, DEBHA, 284592 DEFINITION Debaryomyces hansenii CBS767 ANNOTATION manual TAXONOMY TAX:284592 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Debaryomyces DATA_SOURCE RefSeq ORIGINAL_DB Bordeaux STATISTICS Number of protein genes: 6324 Number of RNA genes: 27 REFERENCE PMID:15229592 AUTHORS Dujon B, et al. TITLE Genome evolution in yeasts. JOURNAL Nature 430:35-44 (2004) /// ENTRY T01027 Complete Genome NAME mgr, M.grisea, MAGGR, 242507 DEFINITION Magnaporthe grisea 70-15 ANNOTATION manual TAXONOMY TAX:242507 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Magnaporthales; Magnaporthaceae; Magnaporthe DATA_SOURCE RefSeq DISEASE Rice blast REFERENCE PMID:15846337 AUTHORS Dean RA, et al. TITLE The genome sequence of the rice blast fungus Magnaporthe grisea. JOURNAL Nature 434:980-6 (2005) /// ENTRY T01028 Complete Genome NAME mcc, M.mulatta, MACMU, 9544 DEFINITION Macaca mulatta (rhesus monkey) ANNOTATION manual TAXONOMY TAX:9544 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca DATA_SOURCE RefSeq STATISTICS Number of protein genes: 23998 Number of RNA genes: 24 REFERENCE PMID:17431167 AUTHORS Gibbs RA, et al. TITLE Evolutionary and biomedical insights from the rhesus macaque genome. JOURNAL Science 316:222-34 (2007) /// ENTRY T01029 Complete Genome NAME olu, O.lucimarinus, OSTLU, 436017 DEFINITION Ostreococcus lucimarinus CCE9901 ANNOTATION manual TAXONOMY TAX:436017 LINEAGE Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae; Mamiellales; Ostreococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 7603 REFERENCE PMID:17460045 AUTHORS Palenik B, et al. TITLE The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. JOURNAL Proc Natl Acad Sci U S A 104:7705-10 (2007) /// ENTRY T01030 Complete Genome NAME ang, A.niger, ASPNC, 425011 DEFINITION Aspergillus niger CBS 513.88 ANNOTATION manual TAXONOMY TAX:425011 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Pezizomycotina; Leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus DATA_SOURCE RefSeq STATISTICS Number of protein genes: 14102 Number of RNA genes: 27 REFERENCE PMID:17259976 AUTHORS Pel HJ, et al. TITLE Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. JOURNAL Nat Biotechnol 25:221-31 (2007) /// ENTRY T01031 Complete Genome NAME mdo, M.domestica, MONDO, 13616 DEFINITION Monodelphis domestica (opossum) ANNOTATION manual TAXONOMY TAX:13616 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis DATA_SOURCE RefSeq STATISTICS Number of protein genes: 19157 Number of RNA genes: 23 REFERENCE PMID:17495919 AUTHORS Mikkelsen TS, et al. TITLE Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. JOURNAL Nature 447:167-77 (2007) /// ENTRY T01032 Complete Genome NAME dpo, D.pseudoobscura, DROPS, 46245 DEFINITION Drosophila pseudoobscura pseudoobscura ANNOTATION manual TAXONOMY TAX:46245 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 16071 REFERENCE PMID:15632085 AUTHORS Richards S, et al. TITLE Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. JOURNAL Genome Res 15:1-18 (2005) /// ENTRY T01033 Complete Genome NAME yli, Y.lipolytica, 284591 DEFINITION Yarrowia lipolytica CLIB122 ANNOTATION manual TAXONOMY TAX:284591 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia DATA_SOURCE RefSeq ORIGINAL_DB Bordeaux STATISTICS Number of protein genes: 6472 Number of RNA genes: 29 REFERENCE PMID:15229592 AUTHORS Dujon B, et al. TITLE Genome evolution in yeasts. JOURNAL Nature 430:35-44 (2004) /// ENTRY T01034 Complete Genome NAME ncr, N.crassa, 367110 DEFINITION Neurospora crassa OR74A ANNOTATION manual TAXONOMY TAX:367110 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora DATA_SOURCE RefSeq ORIGINAL_DB Broad STATISTICS Number of protein genes: 9824 REFERENCE PMID:12712197 AUTHORS Galagan JE, et al. TITLE The genome sequence of the filamentous fungus Neurospora crassa. JOURNAL Nature 422:859-68 (2003) /// ENTRY T01035 Complete Genome NAME pyo, P.yoelii, 352914 DEFINITION Plasmodium yoelii yoelii 17XNL ANNOTATION manual TAXONOMY TAX:352914 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Vinckeia) DATA_SOURCE RefSeq ORIGINAL_DB TIGR STATISTICS Number of protein genes: 7353 REFERENCE PMID:12368865 AUTHORS Carlton JM, et al. TITLE Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. JOURNAL Nature 419:512-9 (2002) /// ENTRY T01036 Complete Genome NAME aga, A.gambiae, ANOGA, 180454 DEFINITION Anopheles gambiae PEST (African malaria mosquito) ANNOTATION KOALA TAXONOMY TAX:180454 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles DATA_SOURCE RefSeq ORIGINAL_DB Ensembl VectorBase STATISTICS Number of protein genes: 12458 Number of RNA genes: 24 REFERENCE PMID:12364791 AUTHORS Holt RA, et al. TITLE The genome sequence of the malaria mosquito Anopheles gambiae. JOURNAL Science 298:129-49 (2002) /// ENTRY T01037 Complete Genome NAME nve, N.vectensis, NEMVE, 45351 DEFINITION Nematostella vectensis (sea anemone) ANNOTATION manual TAXONOMY TAX:45351 LINEAGE Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella DATA_SOURCE RefSeq STATISTICS Number of protein genes: 24773 REFERENCE PMID:17615350 AUTHORS Putnam NH, et al. TITLE Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. JOURNAL Science 317:86-94 (2007) /// ENTRY T01038 Complete Genome NAME fgr, F.graminearum, 229533 DEFINITION Fusarium graminearum (Gibberella zeae PH-1) ANNOTATION KOALA TAXONOMY TAX:229533 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Gibberella DATA_SOURCE RefSeq STATISTICS Number of protein genes: 11656 Number of RNA genes: 30 REFERENCE PMID:17823352 AUTHORS Cuomo CA, et al. TITLE The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. JOURNAL Science 317:1400-2 (2007) /// ENTRY T01039 Complete Genome NAME cre, C.reinhardtii, CHLRE, 3055 DEFINITION Chlamydomonas reinhardtii ANNOTATION KOALA TAXONOMY TAX:3055 LINEAGE Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 14416 Number of RNA genes: 57 REFERENCE PMID:17932292 AUTHORS Merchant SS, et al. TITLE The Chlamydomonas genome reveals the evolution of key animal and plant functions. JOURNAL Science 318:245-50 (2007) /// ENTRY T01040 Complete Genome NAME cnb, C.neoformans_B3501A, CRYNE, 283643 DEFINITION Cryptococcus neoformans B-3501A ANNOTATION KOALA TAXONOMY TAX:283643 LINEAGE Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; Filobasidiella/Cryptococcus neoformans species complex DATA_SOURCE RefSeq ORIGINAL_DB Stanford STATISTICS Number of protein genes: 6500 REFERENCE PMID:15653466 AUTHORS Loftus BJ, et al. TITLE The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. JOURNAL Science 307:1321-4 (2005) /// ENTRY T01041 Complete Genome NAME ppp, P.patens_patens, PHYPA, 145481 DEFINITION Physcomitrella patens subsp. patens ANNOTATION KOALA TAXONOMY TAX:145481 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 35925 Number of RNA genes: 71 REFERENCE PMID:18079367 AUTHORS Rensing SA, et al. TITLE The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. JOURNAL Science 319:64-9 (2008) /// ENTRY T01042 Complete Genome NAME mbr, M.brevicollis, MONBE, 431895 DEFINITION Monosiga brevicollis MX1 ANNOTATION KOALA TAXONOMY TAX:431895 LINEAGE Eukaryota; Choanoflagellida; Codonosigidae; Monosiga DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 9171 REFERENCE PMID:18273011 AUTHORS King N, et al. TITLE The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. JOURNAL Nature 451:783-8 (2008) /// ENTRY T01043 Complete Genome NAME mgl, M.globosa, MALGO, 425265 DEFINITION Malassezia globosa CBS 7966 ANNOTATION KOALA TAXONOMY TAX:425265 LINEAGE Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycotina incertae sedis; Malasseziales; Malassezia DATA_SOURCE RefSeq STATISTICS Number of protein genes: 4286 REFERENCE PMID:18000048 AUTHORS Xu J, et al. TITLE Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens. JOURNAL Proc Natl Acad Sci U S A 104:18730-5 (2007) /// ENTRY T01044 Complete Genome NAME lbc, L.bicolor, LACBS, 486041 DEFINITION Laccaria bicolor S238N-H82 ANNOTATION KOALA TAXONOMY TAX:486041 LINEAGE Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Tricholomataceae; Laccaria DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 18215 REFERENCE PMID:18322534 AUTHORS Martin F, et al. TITLE The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. JOURNAL Nature 452:88-92 (2008) /// ENTRY T01045 Complete Genome NAME oaa, O.anatinus, ORNAN, 9258 DEFINITION Ornithorhynchus anatinus (platypus) ANNOTATION manual TAXONOMY TAX:9258 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus DATA_SOURCE RefSeq ORIGINAL_DB Washington U STATISTICS Number of protein genes: 16387 Number of RNA genes: 24 REFERENCE PMID:18464734 AUTHORS Warren WC, et al. TITLE Genome analysis of the platypus reveals unique signatures of evolution. JOURNAL Nature 453:175-83 (2008) /// ENTRY T01046 Complete Genome NAME tca, T.castaneum, TRICA, 7070 DEFINITION Tribolium castaneum (red flour beetle) ANNOTATION KOALA TAXONOMY TAX:7070 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tribolium DATA_SOURCE RefSeq ORIGINAL_DB HGSC STATISTICS Number of protein genes: 9817 Number of RNA genes: 24 REFERENCE PMID:18362917 AUTHORS Richards S, et al. TITLE The genome of the model beetle and pest Tribolium castaneum. JOURNAL Nature 452:949-55 (2008) /// ENTRY T01047 Complete Genome NAME gla, G.lamblia, GIALA, 184922 DEFINITION Giardia lamblia ATCC 50803 ANNOTATION KOALA TAXONOMY TAX:184922 LINEAGE Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia DATA_SOURCE RefSeq ORIGINAL_DB GiardiaDB STATISTICS Number of protein genes: 6502 REFERENCE PMID:17901334 AUTHORS Morrison HG, et al. TITLE Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. JOURNAL Science 317:1921-6 (2007) /// ENTRY T01048 Complete Genome NAME pan, P.anserina, 515849 DEFINITION Podospora anserina DSM 980 ANNOTATION KOALA TAXONOMY TAX:515849 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Lasiosphaeriaceae; Podospora DATA_SOURCE RefSeq ORIGINAL_DB Univ Paris-Sud STATISTICS Number of protein genes: 10272 Number of RNA genes: 29 REFERENCE PMID:18460219 AUTHORS Espagne E, et al. TITLE The genome sequence of the model ascomycete fungus Podospora anserina. JOURNAL Genome Biol 9:R77 (2008) /// ENTRY T01049 Complete Genome NAME vpo, V.polyspora, VANPO, 436907 DEFINITION Vanderwaltozyma polyspora DSM 70294 ANNOTATION KOALA TAXONOMY TAX:436907 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Vanderwaltozyma DATA_SOURCE RefSeq STATISTICS Number of protein genes: 5336 Number of RNA genes: 23 REFERENCE PMID:17494770 AUTHORS Scannell DR, et al. TITLE Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. JOURNAL Proc Natl Acad Sci U S A 104:8397-402 (2007) /// ENTRY T01050 Complete Genome NAME bmy, B.malayi, BRUMA, 6279 DEFINITION Brugia malayi (filaria) ANNOTATION KOALA TAXONOMY TAX:6279 LINEAGE Eukaryota; Metazoa; Nematoda; Chromadorea; Spirurida; Filarioidea; Onchocercidae; Brugia DATA_SOURCE RefSeq ORIGINAL_DB WormBase STATISTICS Number of protein genes: 11371 Number of RNA genes: 24 REFERENCE PMID:17885136 AUTHORS Ghedin E, et al. TITLE Draft genome of the filarial nematode parasite Brugia malayi. JOURNAL Science 317:1756-60 (2007) /// ENTRY T01051 Complete Genome NAME pfd, P.falciparum_Dd2, PLAF4, 57267 DEFINITION Plasmodium falciparum Dd2 ANNOTATION KOALA TAXONOMY TAX:57267 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Laverania) DATA_SOURCE Broad ORIGINAL_DB Broad STATISTICS Number of protein genes: 4955 REFERENCE PMID:17159979 AUTHORS Volkman SK, et al. TITLE A genome-wide map of diversity in Plasmodium falciparum. JOURNAL Nat Genet 39:113-9 (2007) /// ENTRY T01052 Complete Genome NAME pfh, P.falciparum_HB3, PLAFX, 137071 DEFINITION Plasmodium falciparum HB3 ANNOTATION KOALA TAXONOMY TAX:137071 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Laverania) DATA_SOURCE Broad ORIGINAL_DB Broad STATISTICS Number of protein genes: 5367 REFERENCE PMID:17159979 AUTHORS Volkman SK, et al. TITLE A genome-wide map of diversity in Plasmodium falciparum. JOURNAL Nat Genet 39:113-9 (2007) /// ENTRY T01053 Complete Genome NAME aag, A.aegypti, AEDAE, 7159 DEFINITION Aedes aegypti (yellow fever mosquito) ANNOTATION KOALA TAXONOMY TAX:7159 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Culicini; Aedes; Stegomyia DATA_SOURCE RefSeq ORIGINAL_DB VectorBase STATISTICS Number of protein genes: 15428 Number of RNA genes: 24 REFERENCE PMID:17510324 AUTHORS Nene V, et al. TITLE Genome sequence of Aedes aegypti, a major arbovirus vector. JOURNAL Science 316:1718-23 (2007) /// ENTRY T01054 Complete Genome NAME cbr, C.briggsae, CAEBR, 6238 DEFINITION Caenorhabditis briggsae AF16 ANNOTATION KOALA TAXONOMY TAX:6238 LINEAGE Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis DATA_SOURCE RefSeq ORIGINAL_DB WormBase STATISTICS Number of protein genes: 19414 Number of RNA genes: 24 REFERENCE PMID:14624247 AUTHORS Stein LD, et al. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. JOURNAL PLoS Biol 1:E45 (2003) /// ENTRY T01055 Complete Genome NAME ptm, P.tetraurelia, PARTE, 412030 DEFINITION Paramecium tetraurelia d4-2 ANNOTATION KOALA TAXONOMY TAX:412030 LINEAGE Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium DATA_SOURCE RefSeq ORIGINAL_DB Genoscope STATISTICS Number of protein genes: 40043 Number of RNA genes: 1 /// ENTRY T01056 Complete Genome NAME cin, C.intestinalis, CIOIN, 7719 DEFINITION Ciona intestinalis (sea squirt) ANNOTATION KOALA TAXONOMY TAX:7719 LINEAGE Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 13438 Number of RNA genes: 26 REFERENCE PMID:12481130 AUTHORS Dehal P, et al. TITLE The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. JOURNAL Science 298:2157-67 (2002) /// ENTRY T01057 Complete Genome NAME ame, A.mellifera, APIME, 7460 DEFINITION Apis mellifera (honey bee) ANNOTATION manual TAXONOMY TAX:7460 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Apis DATA_SOURCE RefSeq ORIGINAL_DB Baylor STATISTICS Number of protein genes: 9106 REFERENCE PMID:17073008 AUTHORS Honeybee Genome Sequencing Consortium. TITLE Insights into social insects from the genome of the honeybee Apis mellifera. JOURNAL Nature 443:931-49 (2006) /// ENTRY T01058 Complete Genome NAME ecb, E.caballus, HORSE, 9796 DEFINITION Equus caballus (horse) ANNOTATION manual TAXONOMY TAX:9796 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus DATA_SOURCE RefSeq ORIGINAL_DB Broad Ensembl STATISTICS Number of protein genes: 17673 Number of RNA genes: 24 REFERENCE PMID:19892987 AUTHORS Wade CM, et al. TITLE Genome sequence, comparative analysis, and population genetics of the domestic horse. JOURNAL Science 326:865-7 (2009) /// ENTRY T01059 Complete Genome NAME dan, D.ananassae, DROAN, 7217 DEFINITION Drosophila ananassae ANNOTATION KOALA TAXONOMY TAX:7217 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 15069 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01060 Complete Genome NAME der, D.erecta, DROER, 7220 DEFINITION Drosophila erecta ANNOTATION KOALA TAXONOMY TAX:7220 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 15044 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01061 Complete Genome NAME dgr, D.grimshawi, DROGR, 7222 DEFINITION Drosophila grimshawi ANNOTATION KOALA TAXONOMY TAX:7222 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 14982 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01062 Complete Genome NAME dmo, D.mojavensis, DROMO, 7230 DEFINITION Drosophila mojavensis ANNOTATION KOALA TAXONOMY TAX:7230 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 14594 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01063 Complete Genome NAME dpe, D.persimilis, DROPE, 7234 DEFINITION Drosophila persimilis ANNOTATION KOALA TAXONOMY TAX:7234 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 16874 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01064 Complete Genome NAME dse, D.sechellia, DROSE, 7238 DEFINITION Drosophila sechellia ANNOTATION KOALA TAXONOMY TAX:7238 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 16480 Number of RNA genes: 24 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01065 Complete Genome NAME dsi, D.simulans, DROSI, 7240 DEFINITION Drosophila simulans ANNOTATION KOALA TAXONOMY TAX:7240 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 15426 Number of RNA genes: 24 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01066 Complete Genome NAME dvi, D.virilis, DROVI, 7244 DEFINITION Drosophila virilis ANNOTATION KOALA TAXONOMY TAX:7244 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 14491 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01067 Complete Genome NAME dwi, D.willistoni, DROWI, 7260 DEFINITION Drosophila willistoni ANNOTATION KOALA TAXONOMY TAX:7260 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 15512 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01068 Complete Genome NAME dya, D.yakuba, DROYA, 7245 DEFINITION Drosophila yakuba ANNOTATION KOALA TAXONOMY TAX:7245 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora DATA_SOURCE RefSeq ORIGINAL_DB FlyBase STATISTICS Number of protein genes: 16090 Number of RNA genes: 24 REFERENCE PMID:17994087 AUTHORS Clark AG, et al. TITLE Evolution of genes and genomes on the Drosophila phylogeny. JOURNAL Nature 450:203-18 (2007) /// ENTRY T01069 Complete Genome NAME tad, T.adhaerens, TRIAD, 10228 DEFINITION Trichoplax adhaerens ANNOTATION KOALA TAXONOMY TAX:10228 LINEAGE Eukaryota; Metazoa; Placozoa; Trichoplax DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 11538 Number of RNA genes: 27 REFERENCE PMID:18719581 AUTHORS Srivastava M, et al. TITLE The Trichoplax genome and the nature of placozoans. JOURNAL Nature 454:955-60 (2008) /// ENTRY T01070 Complete Genome NAME nfi, N.fischeri, NEOFI, 331117 DEFINITION Neosartorya fischeri NRRL 181 ANNOTATION KOALA TAXONOMY TAX:331117 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Neosartorya DATA_SOURCE RefSeq ORIGINAL_DB JCVI STATISTICS Number of protein genes: 10406 REFERENCE PMID:18404212 AUTHORS Fedorova ND, et al. TITLE Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. JOURNAL PLoS Genet 4:e1000046 (2008) /// ENTRY T01071 Complete Genome NAME ssl, S.sclerotiorum, SCLS1, 665079 DEFINITION Sclerotinia sclerotiorum 1980 UF-70 ANNOTATION KOALA TAXONOMY TAX:665079 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia DATA_SOURCE RefSeq ORIGINAL_DB Broad STATISTICS Number of protein genes: 14446 /// ENTRY T01072 Complete Genome NAME bfu, B.fuckeliana, BOTFB, 332648 DEFINITION Botryotinia fuckeliana B05.10 ANNOTATION KOALA TAXONOMY TAX:332648 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Botryotinia DATA_SOURCE RefSeq STATISTICS Number of protein genes: 16389 /// ENTRY T01073 Complete Genome NAME pvx, P.vivax, PLAVS, 126793 DEFINITION Plasmodium vivax SaI-1 ANNOTATION KOALA TAXONOMY TAX:126793 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Plasmodium) DATA_SOURCE RefSeq STATISTICS Number of protein genes: 5393 REFERENCE PMID:18843361 AUTHORS Carlton JM, et al. TITLE Comparative genomics of the neglected human malaria parasite Plasmodium vivax. JOURNAL Nature 455:757-63 (2008) /// ENTRY T01074 Complete Genome NAME bfo, B.floridae, BRAFL, 7739 DEFINITION Branchiostoma floridae (Florida lancelet) ANNOTATION KOALA TAXONOMY TAX:7739 LINEAGE Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 28634 Number of RNA genes: 24 REFERENCE PMID:18563158 AUTHORS Putnam NH, et al. TITLE The amphioxus genome and the evolution of the chordate karyotype. JOURNAL Nature 453:1064-71 (2008) /// ENTRY T01075 Complete Genome NAME pti, P.tricornutum, PHATR, 556484 DEFINITION Phaeodactylum tricornutum CCAP 1055/1 ANNOTATION KOALA TAXONOMY TAX:556484 LINEAGE Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum DATA_SOURCE RefSeq ORIGINAL_DB CNRS JGI STATISTICS Number of protein genes: 10392 REFERENCE PMID:18923393 AUTHORS Bowler C, et al. TITLE The Phaeodactylum genome reveals the evolutionary history of diatom genomes. JOURNAL Nature 456:239-44 (2008) /// ENTRY T01076 Complete Genome NAME api, A.pisum, ACYPI, 7029 DEFINITION Acyrthosiphon pisum (pea aphid) ANNOTATION KOALA TAXONOMY TAX:7029 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidiformes; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon DATA_SOURCE RefSeq STATISTICS Number of protein genes: 10362 Number of RNA genes: 25 REFERENCE PMID:20186266 AUTHORS International Aphid Genomics Consortium. TITLE Genome sequence of the pea aphid Acyrthosiphon pisum. JOURNAL PLoS Biol 8:e1000313 (2010) /// ENTRY T01077 Complete Genome NAME pop, P.trichocarpa, POPTR, 3694 DEFINITION Populus trichocarpa (black cottonwood) ANNOTATION KOALA TAXONOMY TAX:3694 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Salicaceae; Saliceae; Populus DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 40484 Number of RNA genes: 45 REFERENCE PMID:16973872 AUTHORS Tuskan GA, et al. TITLE The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). JOURNAL Science 313:1596-604 (2006) /// ENTRY T01078 Complete Genome NAME tps, T.pseudonana, THAPS, 296543 DEFINITION Thalassiosira pseudonana CCMP1335 ANNOTATION KOALA TAXONOMY TAX:296543 LINEAGE Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 11672 /// ENTRY T01079 Complete Genome NAME cqu, C.quinquefasciatus, CULQU, 7176 DEFINITION Culex quinquefasciatus (southern house mosquito) ANNOTATION KOALA TAXONOMY TAX:7176 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex DATA_SOURCE RefSeq ORIGINAL_DB VectorBase STATISTICS Number of protein genes: 18883 /// ENTRY T01080 Complete Genome NAME hmg, H.magnipapillata, HYDMA, 6085 DEFINITION Hydra magnipapillata ANNOTATION KOALA TAXONOMY TAX:6085 LINEAGE Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroida; Anthomedusae; Hydridae; Hydra DATA_SOURCE RefSeq STATISTICS Number of protein genes: 17250 Number of RNA genes: 5 /// ENTRY T01081 Complete Genome NAME nvi, N.vitripennis, NASVI, 7425 DEFINITION Nasonia vitripennis (jewel wasp) ANNOTATION KOALA TAXONOMY TAX:7425 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia DATA_SOURCE RefSeq STATISTICS Number of protein genes: 9421 /// ENTRY T01082 Complete Genome NAME tgu, T.guttata, TAEGU, 59729 DEFINITION Taeniopygia guttata (zebra finch) ANNOTATION manual TAXONOMY TAX:59729 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia DATA_SOURCE RefSeq STATISTICS Number of protein genes: 13682 Number of RNA genes: 24 /// ENTRY T01083 Complete Genome NAME edi, E.dispar, ENTDI, 370354 DEFINITION Entamoeba dispar SAW760 ANNOTATION KOALA TAXONOMY TAX:370354 LINEAGE Eukaryota; Amoebozoa; Archamoebae; Entamoebidae; Entamoeba DATA_SOURCE RefSeq ORIGINAL_DB JCVI-Pathema STATISTICS Number of protein genes: 8811 /// ENTRY T01084 Complete Genome NAME vvi, V.vinifera, VITVI, 29760 DEFINITION Vitis vinifera (wine grape) ANNOTATION KOALA TAXONOMY TAX:29760 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis DATA_SOURCE RefSeq ORIGINAL_DB Genoscope STATISTICS Number of protein genes: 22511 Number of RNA genes: 87 /// ENTRY T01085 Complete Genome NAME bbo, B.bovis, 484906 DEFINITION Babesia bovis T2Bo ANNOTATION manual TAXONOMY TAX:484906 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Piroplasmida; Babesiidae; Babesia DATA_SOURCE RefSeq STATISTICS Number of protein genes: 3706 Number of RNA genes: 29 REFERENCE PMID:17953480 AUTHORS Brayton KA, et al. TITLE Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa. JOURNAL PLoS Pathog 3:1401-13 (2007) /// ENTRY T01086 Complete Genome NAME sbi, S.bicolor, SORBI, 4558 DEFINITION Sorghum bicolor (sorghum) ANNOTATION KOALA TAXONOMY TAX:4558 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Sorghum DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 33002 Number of RNA genes: 77 /// ENTRY T01087 Complete Genome NAME rcu, R.communis, 3988 DEFINITION Ricinus communis (castor bean) ANNOTATION KOALA TAXONOMY TAX:3988 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus DATA_SOURCE RefSeq STATISTICS Number of protein genes: 31221 /// ENTRY T01088 Complete Genome NAME zma, Z.mays, 4577 DEFINITION Zea mays (maize) ANNOTATION KOALA TAXONOMY TAX:4577 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Zea DATA_SOURCE RefSeq STATISTICS Number of protein genes: 17821 Number of RNA genes: 46 REFERENCE PMID:19965430 AUTHORS Schnable PS, et al. TITLE The B73 maize genome: complexity, diversity, and dynamics. JOURNAL Science 326:1112-5 (2009) /// ENTRY T01089 Complete Genome NAME mpr, M.perniciosa, 554373 DEFINITION Moniliophthora perniciosa FA553 ANNOTATION KOALA TAXONOMY TAX:554373 LINEAGE Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Marasmiaceae; mitosporic Marasmiaceae; Moniliophthora DATA_SOURCE RefSeq ORIGINAL_DB Unicamp STATISTICS Number of protein genes: 13560 REFERENCE PMID:19019209 AUTHORS Mondego JM, et al. TITLE A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao. JOURNAL BMC Genomics 9:548 (2008) /// ENTRY T01090 Complete Genome NAME afv, A.flavus, 332952 DEFINITION Aspergillus flavus NRRL3357 ANNOTATION KOALA TAXONOMY TAX:332952 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus DATA_SOURCE RefSeq STATISTICS Number of protein genes: 13487 REFERENCE PMID:19195728 AUTHORS Cleveland TE, et al. TITLE Potential of Aspergillus flavus genomics for applications in biotechnology. JOURNAL Trends Biotechnol 27:151-7 (2009) /// ENTRY T01091 Complete Genome NAME pcs, P.chrysogenum, 500485 DEFINITION Penicillium chrysogenum Wisconsin 54-1255 ANNOTATION KOALA TAXONOMY TAX:500485 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Penicillium; Penicillium chrysogenum complex DATA_SOURCE RefSeq STATISTICS Number of protein genes: 12791 REFERENCE PMID:18820685 AUTHORS van den Berg MA, et al. TITLE Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum. JOURNAL Nat Biotechnol 26:1161-8 (2008) /// ENTRY T01092 Complete Genome NAME ppa, P.pastoris, 644223 DEFINITION Pichia pastoris GS115 ANNOTATION KOALA TAXONOMY TAX:644223 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Pichia DATA_SOURCE RefSeq STATISTICS Number of protein genes: 5040 REFERENCE PMID:19465926 AUTHORS De Schutter K, et al. TITLE Genome sequence of the recombinant protein production host Pichia pastoris. JOURNAL Nat Biotechnol 27:561-6 (2009) /// ENTRY T01093 Complete Genome NAME tgo, T.gondii, 508771 DEFINITION Toxoplasma gondii ME49 ANNOTATION manual TAXONOMY TAX:508771 LINEAGE Eukaryota; Alveolata; Apicomplexa; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma DATA_SOURCE RefSeq STATISTICS Number of protein genes: 7987 /// ENTRY T01094 Complete Genome NAME pkn, P.knowlesi, 5851 DEFINITION Plasmodium knowlesi strain H ANNOTATION manual TAXONOMY TAX:5851 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Plasmodium) DATA_SOURCE RefSeq ORIGINAL_DB Sanger STATISTICS Number of protein genes: 5102 REFERENCE PMID:18843368 AUTHORS Pain A, et al. TITLE The genome of the simian and human malaria parasite Plasmodium knowlesi. JOURNAL Nature 455:799-803 (2008) /// ENTRY T01095 Complete Genome NAME smm, S.mansoni, 6183 DEFINITION Schistosoma mansoni ANNOTATION KOALA TAXONOMY TAX:6183 LINEAGE Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma DATA_SOURCE RefSeq ORIGINAL_DB Sanger STATISTICS Number of protein genes: 12857 Number of RNA genes: 25 REFERENCE PMID:19606141 AUTHORS Berriman M, et al. TITLE The genome of the blood fluke Schistosoma mansoni. JOURNAL Nature 460:352-8 (2009) /// ENTRY T01096 Complete Genome NAME eoh, E.coli_O103_H2, 585395 DEFINITION Escherichia coli O103:H2 12009 ANNOTATION KOALA TAXONOMY TAX:585395 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo CHROMOSOME Circular SEQUENCE RS:NC_013353 LENGTH 5449314 PLASMID pO103; Circular SEQUENCE RS:NC_013354 LENGTH 75546 STATISTICS Number of nucleotides: 5524860 Number of protein genes: 5121 Number of RNA genes: 191 REFERENCE PMID:19815525 AUTHORS Ogura Y, et al. TITLE Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. JOURNAL Proc Natl Acad Sci U S A 106:17939-44 (2009) /// ENTRY T01097 Complete Genome NAME eoi, E.coli_O111_H-, 585396 DEFINITION Escherichia coli O111:H- 11128 ANNOTATION KOALA TAXONOMY TAX:585396 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo CHROMOSOME Circular SEQUENCE RS:NC_013364 LENGTH 5371077 PLASMID pO111_1; Circular SEQUENCE RS:NC_013365 LENGTH 204604 PLASMID pO111_2; Circular SEQUENCE RS:NC_013370 LENGTH 97897 PLASMID pO111_3; Circular SEQUENCE RS:NC_013366 LENGTH 77690 PLASMID pO111_4; Circular SEQUENCE RS:NC_013367 LENGTH 8140 PLASMID pO111_5; Circular SEQUENCE RS:NC_013368 LENGTH 6673 STATISTICS Number of nucleotides: 5766081 Number of protein genes: 5407 Number of RNA genes: 203 REFERENCE PMID:19815525 AUTHORS Ogura Y, et al. TITLE Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. JOURNAL Proc Natl Acad Sci U S A 106:17939-44 (2009) /// ENTRY T01098 Complete Genome NAME eoj, E.coli_O26_H11, 573235 DEFINITION Escherichia coli O26:H11 11368 ANNOTATION KOALA TAXONOMY TAX:573235 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo CHROMOSOME Circular SEQUENCE RS:NC_013361 LENGTH 5697240 PLASMID pO26_1; Circular SEQUENCE RS:NC_013369 LENGTH 85167 PLASMID pO26_2; Circular SEQUENCE RS:NC_013362 LENGTH 63365 PLASMID pO26_3; Circular SEQUENCE RS:NC_013363 LENGTH 5686 STATISTICS Number of nucleotides: 5851458 Number of protein genes: 5516 Number of RNA genes: 194 REFERENCE PMID:19815525 AUTHORS Ogura Y, et al. TITLE Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. JOURNAL Proc Natl Acad Sci U S A 106:17939-44 (2009) /// ENTRY T01099 Complete Genome NAME fsu, F.succinogenes, 59374 DEFINITION Fibrobacter succinogenes subsp. succinogenes S85 ANNOTATION manual TAXONOMY TAX:59374 LINEAGE Bacteria; Fibrobacteres; Fibrobacterales; Fibrobacteraceae; Fibrobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013410 LENGTH 3842635 STATISTICS Number of nucleotides: 3842635 Number of protein genes: 3085 Number of RNA genes: 69 /// ENTRY T01100 Complete Genome NAME gym, Geobacillus_Y412MC10, 481743 DEFINITION Geobacillus sp. Y412MC10 ANNOTATION KOALA TAXONOMY TAX:481743 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Geobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013406 LENGTH 7121665 STATISTICS Number of nucleotides: 7121665 Number of protein genes: 6238 Number of RNA genes: 101 /// ENTRY T01101 Complete Genome NAME gyc, Geobacillus_Y412MC61, 544556 DEFINITION Geobacillus sp. Y412MC61 ANNOTATION KOALA TAXONOMY TAX:544556 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Geobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013411 LENGTH 3622844 PLASMID pGYMC6101; Circular SEQUENCE RS:NC_013412 LENGTH 45057 STATISTICS Number of nucleotides: 3667901 Number of protein genes: 3446 Number of RNA genes: 117 /// ENTRY T01102 Complete Genome NAME gbr, G.bronchialis, 526226 DEFINITION Gordonia bronchialis DSM 43247 ANNOTATION KOALA TAXONOMY TAX:526226 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Gordoniaceae; Gordonia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013441 LENGTH 5208602 PLASMID pGBRO01; Circular SEQUENCE RS:NC_013442 LENGTH 81410 STATISTICS Number of nucleotides: 5290012 Number of protein genes: 4696 Number of RNA genes: 58 /// ENTRY T01103 Complete Genome NAME hoh, H.ochraceum, 502025 DEFINITION Haliangium ochraceum DSM 14365 ANNOTATION KOALA TAXONOMY TAX:502025 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Haliangiaceae; Haliangium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013440 LENGTH 9446314 STATISTICS Number of nucleotides: 9446314 Number of protein genes: 6719 Number of RNA genes: 55 /// ENTRY T01104 Complete Genome NAME hna, H.neapolitanus, 555778 DEFINITION Halothiobacillus neapolitanus c2 ANNOTATION KOALA TAXONOMY TAX:555778 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013422 LENGTH 2582886 STATISTICS Number of nucleotides: 2582886 Number of protein genes: 2357 Number of RNA genes: 52 /// ENTRY T01105 Complete Genome NAME mvu, M.vulcanius, 579137 DEFINITION Methanocaldococcus vulcanius M7 ANNOTATION KOALA TAXONOMY TAX:579137 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013407 LENGTH 1746329 PLASMID pMETVU01; Circular SEQUENCE RS:NC_013408 LENGTH 10704 PLASMID pMETVU02; Circular SEQUENCE RS:NC_013409 LENGTH 4704 STATISTICS Number of nucleotides: 1761737 Number of protein genes: 1742 Number of RNA genes: 43 /// ENTRY T01106 Complete Genome NAME pwa, P.wasabiae, 561231 DEFINITION Pectobacterium wasabiae WPP163 ANNOTATION KOALA TAXONOMY TAX:561231 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013421 LENGTH 5063892 STATISTICS Number of nucleotides: 5063892 Number of protein genes: 4437 Number of RNA genes: 101 /// ENTRY T01107 Complete Genome NAME vex, Vibrio_Ex25, 150340 DEFINITION Vibrio sp. Ex25 ANNOTATION KOALA TAXONOMY TAX:150340 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio DATA_SOURCE RefSeq ORIGINAL_DB LANL CHROMOSOME 1; Circular SEQUENCE RS:NC_013456 LENGTH 3259580 CHROMOSOME 2; Circular SEQUENCE RS:NC_013457 LENGTH 1829445 STATISTICS Number of nucleotides: 5089025 Number of protein genes: 4518 Number of RNA genes: 158 /// ENTRY T01108 Complete Genome NAME pcb, P.chabaudi, 31271 DEFINITION Plasmodium chabaudi chabaudi ANNOTATION KOALA TAXONOMY TAX:31271 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Vinckeia) DATA_SOURCE RefSeq STATISTICS Number of protein genes: 12252 /// ENTRY T01109 Complete Genome NAME ctt, C.testosteroni, 688245 DEFINITION Comamonas testosteroni CNB-2 ANNOTATION KOALA TAXONOMY TAX:688245 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas DATA_SOURCE RefSeq ORIGINAL_DB Beijing CHROMOSOME Circular SEQUENCE RS:NC_013446 LENGTH 5373643 STATISTICS Number of nucleotides: 5373643 Number of protein genes: 4799 Number of RNA genes: 88 REFERENCE PMID:19734336 AUTHORS Ma YF, et al. TITLE The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments. JOURNAL Appl Environ Microbiol 75:6812-9 (2009) /// ENTRY T01110 Complete Genome NAME zmn, Z.mobilis_NCIMB11163, 622759 DEFINITION Zymomonas mobilis subsp. mobilis NCIMB 11163 ANNOTATION KOALA TAXONOMY TAX:622759 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013355 LENGTH 2124771 PLASMID pZA1001; Circular SEQUENCE RS:NC_013356 LENGTH 53380 PLASMID pZA1002; Circular SEQUENCE RS:NC_013357 LENGTH 40818 PLASMID pZA1003; Circular SEQUENCE RS:NC_013358 LENGTH 4551 STATISTICS Number of nucleotides: 2223520 Number of protein genes: 1884 Number of RNA genes: 63 REFERENCE PMID:19767433 AUTHORS Kouvelis VN, et al. TITLE Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163. JOURNAL J Bacteriol 191:7140-1 (2009) /// ENTRY T01111 Complete Genome NAME pbe, P.berghei, 5823 DEFINITION Plasmodium berghei ANKA ANNOTATION KOALA TAXONOMY TAX:5823 LINEAGE Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Vinckeia) DATA_SOURCE RefSeq STATISTICS Number of protein genes: 9821 /// ENTRY T01112 Complete Genome NAME lif, L.infantum, 435258 DEFINITION Leishmania infantum JPCM5 ANNOTATION KOALA TAXONOMY TAX:435258 LINEAGE Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmania DATA_SOURCE RefSeq STATISTICS Number of protein genes: 7992 /// ENTRY T01113 Complete Genome NAME lbz, L.braziliensis, 420245 DEFINITION Leishmania braziliensis MHOM/BR/75/M2904 ANNOTATION KOALA TAXONOMY TAX:420245 LINEAGE Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmania; Leishmania braziliensis species complex DATA_SOURCE RefSeq STATISTICS Number of protein genes: 7895 /// ENTRY T01114 Complete Genome NAME cim, C.immitis, 246410 DEFINITION Coccidioides immitis RS ANNOTATION KOALA TAXONOMY TAX:246410 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; mitosporic Onygenales; Coccidioides DATA_SOURCE RefSeq ORIGINAL_DB Broad STATISTICS Number of protein genes: 10440 REFERENCE PMID:19717792 AUTHORS Sharpton TJ, et al. TITLE Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. JOURNAL Genome Res 19:1722-31 (2009) /// ENTRY T01115 Complete Genome NAME ctp, C.tropicalis, 294747 DEFINITION Candida tropicalis MYA-3404 ANNOTATION KOALA TAXONOMY TAX:294747 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida DATA_SOURCE RefSeq ORIGINAL_DB Broad STATISTICS Number of protein genes: 6254 REFERENCE PMID:19465905 AUTHORS Butler G, et al. TITLE Evolution of pathogenicity and sexual reproduction in eight Candida genomes. JOURNAL Nature 459:657-62 (2009) /// ENTRY T01116 Complete Genome NAME lel, L.elongisporus, 379508 DEFINITION Lodderomyces elongisporus NRRL YB-4239 ANNOTATION KOALA TAXONOMY TAX:379508 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lodderomyces DATA_SOURCE RefSeq ORIGINAL_DB Broad STATISTICS Number of protein genes: 5799 REFERENCE PMID:19465905 AUTHORS Butler G, et al. TITLE Evolution of pathogenicity and sexual reproduction in eight Candida genomes. JOURNAL Nature 459:657-62 (2009) /// ENTRY T01117 Complete Genome NAME lth, L.thermotolerans, 559295 DEFINITION Lachancea thermotolerans CBS 6340 ANNOTATION KOALA TAXONOMY TAX:559295 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea DATA_SOURCE RefSeq STATISTICS Number of protein genes: 5091 /// ENTRY T01118 Complete Genome NAME zro, Z.rouxii, 559307 DEFINITION Zygosaccharomyces rouxii CBS 732 ANNOTATION KOALA TAXONOMY TAX:559307 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Zygosaccharomyces DATA_SOURCE RefSeq ORIGINAL_DB CNRS STATISTICS Number of protein genes: 4991 REFERENCE PMID:19525356 AUTHORS Souciet JL, et al. TITLE Comparative genomics of protoploid Saccharomycetaceae. JOURNAL Genome Res 19:1696-709 (2009) /// ENTRY T01119 Complete Genome NAME rmr, R.marinus, 518766 DEFINITION Rhodothermus marinus DSM 4252 ANNOTATION KOALA TAXONOMY TAX:518766 LINEAGE Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Rhodothermaceae; Rhodothermus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013501 LENGTH 3261604 PLASMID pRMAR01; Circular SEQUENCE RS:NC_013502 LENGTH 125133 STATISTICS Number of nucleotides: 3386737 Number of protein genes: 2863 Number of RNA genes: 51 /// ENTRY T01120 Complete Genome NAME ljf, L.johnsonii_FI9785, 633699 DEFINITION Lactobacillus johnsonii FI9785 ANNOTATION KOALA TAXONOMY TAX:633699 LINEAGE Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus DATA_SOURCE RefSeq ORIGINAL_DB IFR CHROMOSOME Circular SEQUENCE RS:NC_013504 LENGTH 1755993 PLASMID p9785L; Circular SEQUENCE RS:NC_013505 LENGTH 25652 STATISTICS Number of nucleotides: 1781645 Number of protein genes: 1733 Number of RNA genes: 70 REFERENCE PMID:19767436 AUTHORS Wegmann U, et al. TITLE Complete genome sequence of Lactobacillus johnsonii FI9785, a competitive exclusion agent against pathogens in poultry. JOURNAL J Bacteriol 191:7142-3 (2009) /// ENTRY T01121 Complete Genome NAME etr, E.tarda, 498217 DEFINITION Edwardsiella tarda EIB202 ANNOTATION KOALA TAXONOMY TAX:498217 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella DATA_SOURCE RefSeq ORIGINAL_DB ECUST CHROMOSOME Circular SEQUENCE RS:NC_013508 LENGTH 3760463 PLASMID pEIB202; Circular SEQUENCE RS:NC_013509 LENGTH 43703 STATISTICS Number of nucleotides: 3804166 Number of protein genes: 3588 Number of RNA genes: 120 REFERENCE PMID:19865481 AUTHORS Wang Q, et al. TITLE Genome sequence of the versatile fish pathogen Edwardsiella tarda provides insights into its adaptation to broad host ranges and intracellular niches. JOURNAL PLoS One 4:e7646 (2009) /// ENTRY T01122 Complete Genome NAME mho, M.hominis, 2098 DEFINITION Mycoplasma hominis ANNOTATION KOALA TAXONOMY TAX:2098 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_013511 LENGTH 665445 STATISTICS Number of nucleotides: 665445 Number of protein genes: 523 Number of RNA genes: 40 REFERENCE PMID:19816563 AUTHORS Pereyre S, et al. TITLE Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas. JOURNAL PLoS Genet 5:e1000677 (2009) /// ENTRY T01123 Complete Genome NAME str, S.termitidis, 526218 DEFINITION Sebaldella termitidis ATCC 33386 ANNOTATION KOALA TAXONOMY TAX:526218 LINEAGE Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Sebaldella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013517 LENGTH 4418842 PLASMID pSTERM01; Circular SEQUENCE RS:NC_013518 LENGTH 54160 PLASMID pSTERM02; Circular SEQUENCE RS:NC_013519 LENGTH 13648 STATISTICS Number of nucleotides: 4486650 Number of protein genes: 4150 Number of RNA genes: 57 /// ENTRY T01124 Complete Genome NAME sad, S.aureus_ED98, 681288 DEFINITION Staphylococcus aureus subsp. aureus ED98 ANNOTATION KOALA TAXONOMY TAX:681288 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB U Edinburgh CHROMOSOME Circular SEQUENCE RS:NC_013450 LENGTH 2824404 PLASMID pAVY; Circular SEQUENCE RS:NC_013451 LENGTH 1442 PLASMID pT181; Circular SEQUENCE RS:NC_013452 LENGTH 4440 PLASMID pAVX; Circular SEQUENCE RS:NC_013453 LENGTH 17256 STATISTICS Number of nucleotides: 2847542 Number of protein genes: 2689 Number of RNA genes: 83 REFERENCE PMID:19884497 AUTHORS Lowder BV, et al. TITLE Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus. JOURNAL Proc Natl Acad Sci U S A 106:19545-19550 (2009) /// ENTRY T01125 Complete Genome NAME smf, S.moniliformis, 519441 DEFINITION Streptobacillus moniliformis DSM 12112 ANNOTATION KOALA TAXONOMY TAX:519441 LINEAGE Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Streptobacillus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013515 LENGTH 1662578 PLASMID pSMON01; Circular SEQUENCE RS:NC_013516 LENGTH 10702 STATISTICS Number of nucleotides: 1673280 Number of protein genes: 1442 Number of RNA genes: 57 /// ENTRY T01126 Complete Genome NAME sdl, S.deleyianum, 525898 DEFINITION Sulfurospirillum deleyianum DSM 6946 ANNOTATION KOALA TAXONOMY TAX:525898 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Sulfurospirillum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013512 LENGTH 2306351 STATISTICS Number of nucleotides: 2306351 Number of protein genes: 2265 Number of RNA genes: 55 /// ENTRY T01127 Complete Genome NAME tcu, T.curvata, 471852 DEFINITION Thermomonospora curvata DSM 43183 ANNOTATION KOALA TAXONOMY TAX:471852 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptosporangineae; Thermomonosporaceae; Thermomonospora DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013510 LENGTH 5639016 STATISTICS Number of nucleotides: 5639016 Number of protein genes: 4890 Number of RNA genes: 76 /// ENTRY T01128 Complete Genome NAME sti, S.thermophilus, 479434 DEFINITION Sphaerobacter thermophilus DSM 20745 ANNOTATION KOALA TAXONOMY TAX:479434 LINEAGE Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_013523 LENGTH 2741033 CHROMOSOME 2; Circular SEQUENCE RS:NC_013524 LENGTH 1252731 STATISTICS Number of nucleotides: 3993764 Number of protein genes: 3485 Number of RNA genes: 60 /// ENTRY T01129 Complete Genome NAME tai, T.acidaminovorans, 525903 DEFINITION Thermanaerovibrio acidaminovorans DSM 6589 ANNOTATION KOALA TAXONOMY TAX:525903 LINEAGE Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Thermanaerovibrio DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013522 LENGTH 1848474 STATISTICS Number of nucleotides: 1848474 Number of protein genes: 1738 Number of RNA genes: 63 /// ENTRY T01130 Complete Genome NAME vpr, V.parvula, 479436 DEFINITION Veillonella parvula DSM 2008 ANNOTATION KOALA TAXONOMY TAX:479436 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Veillonellaceae; Veillonella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013520 LENGTH 2132142 STATISTICS Number of nucleotides: 2132142 Number of protein genes: 1844 Number of RNA genes: 64 /// ENTRY T01131 Complete Genome NAME isc, I.scapularis, 6945 DEFINITION Ixodes scapularis (black-legged tick) ANNOTATION KOALA TAXONOMY TAX:6945 LINEAGE Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes DATA_SOURCE RefSeq STATISTICS Number of protein genes: 20452 /// ENTRY T01132 Complete Genome NAME ure, U.reesii, 336963 DEFINITION Uncinocarpus reesii 1704 ANNOTATION KOALA TAXONOMY TAX:336963 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Onygenaceae; Uncinocarpus DATA_SOURCE RefSeq ORIGINAL_DB Broad STATISTICS Number of protein genes: 7760 REFERENCE PMID:19717792 AUTHORS Sharpton TJ, et al. TITLE Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. JOURNAL Genome Res 19:1722-31 (2009) /// ENTRY T01133 Complete Genome NAME acn, A.centrale, 574556 DEFINITION Anaplasma centrale Israel ANNOTATION KOALA TAXONOMY TAX:574556 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma DATA_SOURCE RefSeq ORIGINAL_DB USDA/ARS CHROMOSOME Circular SEQUENCE RS:NC_013532 LENGTH 1206806 STATISTICS Number of nucleotides: 1206806 Number of protein genes: 923 Number of RNA genes: 40 REFERENCE PMID:19854912 AUTHORS Herndon DR, et al. TITLE Complete genome sequence of Anaplasma marginale subsp. centrale. JOURNAL J Bacteriol 192:379-80 (2010) /// ENTRY T01134 Complete Genome NAME ttr, T.terrenum, 525904 DEFINITION Thermobaculum terrenum ATCC BAA-798 ANNOTATION KOALA TAXONOMY TAX:525904 LINEAGE Bacteria; Thermobaculum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME 1; Circular SEQUENCE RS:NC_013525 LENGTH 2026947 CHROMOSOME 2; Circular SEQUENCE RS:NC_013526 LENGTH 1074634 STATISTICS Number of nucleotides: 3101581 Number of protein genes: 2832 Number of RNA genes: 60 /// ENTRY T01135 Complete Genome NAME xce, X.cellulosilytica, 446471 DEFINITION Xylanimonas cellulosilytica DSM 15894 ANNOTATION KOALA TAXONOMY TAX:446471 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Promicromonosporaceae; Xylanimonas DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013530 LENGTH 3742776 PLASMID pXCEL01; Circular SEQUENCE RS:NC_013531 LENGTH 88604 STATISTICS Number of nucleotides: 3831380 Number of protein genes: 3443 Number of RNA genes: 64 /// ENTRY T01136 Complete Genome NAME dev, Dehalococcoides_VS, 311424 DEFINITION Dehalococcoides sp. VS ANNOTATION KOALA TAXONOMY TAX:311424 LINEAGE Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013552 LENGTH 1413462 STATISTICS Number of nucleotides: 1413462 Number of protein genes: 1438 Number of RNA genes: 51 REFERENCE PMID:19893622 AUTHORS McMurdie PJ, et al. TITLE Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. JOURNAL PLoS Genet 5:e1000714 (2009) /// ENTRY T01137 Complete Genome NAME sro, S.roseum, 479432 DEFINITION Streptosporangium roseum DSM 43021 ANNOTATION KOALA TAXONOMY TAX:479432 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptosporangineae; Streptosporangiaceae; Streptosporangium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013595 LENGTH 10341314 PLASMID pSROS01; Circular SEQUENCE RS:NC_013596 LENGTH 28204 STATISTICS Number of nucleotides: 10369518 Number of protein genes: 8975 Number of RNA genes: 89 /// ENTRY T01138 Complete Genome NAME ddc, D.dadantii_Ech586, 590409 DEFINITION Dickeya dadantii Ech586 ANNOTATION manual TAXONOMY TAX:590409 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013592 LENGTH 4818394 STATISTICS Number of nucleotides: 4818394 Number of protein genes: 4144 Number of RNA genes: 102 /// ENTRY T01139 Complete Genome NAME tnp, T.naphthophila, 590168 DEFINITION Thermotoga naphthophila RKU-10 ANNOTATION KOALA TAXONOMY TAX:590168 LINEAGE Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013642 LENGTH 1809823 STATISTICS Number of nucleotides: 1809823 Number of protein genes: 1768 Number of RNA genes: 52 /// ENTRY T01140 Complete Genome NAME cdu, C.dubliniensis, 573826 DEFINITION Candida dubliniensis ANNOTATION KOALA TAXONOMY TAX:573826 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida DATA_SOURCE RefSeq ORIGINAL_DB Sanger STATISTICS Number of protein genes: 5859 REFERENCE PMID:19745113 AUTHORS Jackson AP, et al. TITLE Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans. JOURNAL Genome Res 19:2231-44 (2009) /// ENTRY T01141 Complete Genome NAME llk, L.lactis_KF147, 684738 DEFINITION Lactococcus lactis subsp. lactis KF147 ANNOTATION KOALA TAXONOMY TAX:684738 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Lactococcus DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_013656 LENGTH 2598144 PLASMID pKF147A; Circular SEQUENCE RS:NC_013657 LENGTH 37510 STATISTICS Number of nucleotides: 2635654 Number of protein genes: 2473 Number of RNA genes: 87 REFERENCE PMID:18039825 AUTHORS Siezen RJ, et al. TITLE Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche. JOURNAL Appl Environ Microbiol 74:424-36 (2008) /// ENTRY T01142 Complete Genome NAME mpd, M.paludicola, 304371 DEFINITION Methanocella paludicola SANAE ANNOTATION KOALA TAXONOMY TAX:304371 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME Circular SEQUENCE RS:NC_013665 LENGTH 2957635 STATISTICS Number of nucleotides: 2957635 Number of protein genes: 3004 Number of RNA genes: 58 REFERENCE PMID:18398197 AUTHORS Sakai S, et al. TITLE Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov. JOURNAL Int J Syst Evol Microbiol 58:929-36 (2008) /// ENTRY T01143 Complete Genome NAME bde, B.dentium, 401473 DEFINITION Bifidobacterium dentium Bd1 ANNOTATION KOALA TAXONOMY TAX:401473 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium DATA_SOURCE RefSeq ORIGINAL_DB U Parma CHROMOSOME Circular SEQUENCE RS:NC_013714 LENGTH 2636367 STATISTICS Number of nucleotides: 2636367 Number of protein genes: 2129 Number of RNA genes: 68 REFERENCE PMID:20041198 AUTHORS Ventura M, et al. TITLE The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. JOURNAL PLoS Genet 5:e1000785 (2009) /// ENTRY T01144 Complete Genome NAME rmu, R.mucilaginosa, 680646 DEFINITION Rothia mucilaginosa DY-18 ANNOTATION KOALA TAXONOMY TAX:680646 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Rothia DATA_SOURCE RefSeq ORIGINAL_DB Osaka Dental U CHROMOSOME Circular SEQUENCE RS:NC_013715 LENGTH 2264603 STATISTICS Number of nucleotides: 2264603 Number of protein genes: 1905 Number of RNA genes: 60 /// ENTRY T01145 Complete Genome NAME cro, C.rodentium, 637910 DEFINITION Citrobacter rodentium ICC168 ANNOTATION KOALA TAXONOMY TAX:637910 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_013716 LENGTH 5346659 PLASMID pCROD1; Circular SEQUENCE RS:NC_013717 LENGTH 54449 PLASMID pCROD2; Circular SEQUENCE RS:NC_013718 LENGTH 39265 PLASMID pCROD3; Circular SEQUENCE RS:NC_013719 LENGTH 3910 STATISTICS Number of nucleotides: 5444283 Number of protein genes: 4913 Number of RNA genes: 109 REFERENCE PMID:19897651 AUTHORS Petty NK, et al. TITLE The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli. JOURNAL J Bacteriol 192:525-38 (2010) /// ENTRY T01146 Complete Genome NAME gva, G.vaginalis, 553190 DEFINITION Gardnerella vaginalis 409-05 ANNOTATION KOALA TAXONOMY TAX:553190 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Gardnerella DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_013721 LENGTH 1617545 STATISTICS Number of nucleotides: 1617545 Number of protein genes: 1258 Number of RNA genes: 54 /// ENTRY T01147 Complete Genome NAME psl, P.staleyi, 530564 DEFINITION Pirellula staleyi DSM 6068 ANNOTATION KOALA TAXONOMY TAX:530564 LINEAGE Bacteria; Planctomycetes; Planctomycetacia; Planctomycetales; Planctomycetaceae; Pirellula DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013720 LENGTH 6196199 STATISTICS Number of nucleotides: 6196199 Number of protein genes: 4717 Number of RNA genes: 52 /// ENTRY T01148 Complete Genome NAME act, A.clavatus, 344612 DEFINITION Aspergillus clavatus NRRL 1 ANNOTATION KOALA TAXONOMY TAX:344612 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus DATA_SOURCE RefSeq ORIGINAL_DB JCVI STATISTICS Number of protein genes: 9121 REFERENCE PMID:18404212 AUTHORS Fedorova ND, et al. TITLE Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. JOURNAL PLoS Genet 4:e1000046 (2008) /// ENTRY T01149 Complete Genome NAME clu, C.lusitaniae, 306902 DEFINITION Clavispora lusitaniae ATCC 42720 ANNOTATION KOALA TAXONOMY TAX:306902 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Metschnikowiaceae; Clavispora DATA_SOURCE RefSeq STATISTICS Number of protein genes: 5936 REFERENCE PMID:19465905 AUTHORS Butler G, et al. TITLE Evolution of pathogenicity and sexual reproduction in eight Candida genomes. JOURNAL Nature 459:657-62 (2009) /// ENTRY T01150 Complete Genome NAME pgu, P.guilliermondii, 294746 DEFINITION Pichia guilliermondii ATCC 6260 ANNOTATION KOALA TAXONOMY TAX:294746 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Pichia DATA_SOURCE RefSeq STATISTICS Number of protein genes: 5920 REFERENCE PMID:19465905 AUTHORS Butler G, et al. TITLE Evolution of pathogenicity and sexual reproduction in eight Candida genomes. JOURNAL Nature 459:657-62 (2009) /// ENTRY T01151 Complete Genome NAME afn, A.fermentans, 591001 DEFINITION Acidaminococcus fermentans DSM 20731 ANNOTATION KOALA TAXONOMY TAX:591001 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales; Veillonellaceae; Acidaminococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013740 LENGTH 2329769 STATISTICS Number of nucleotides: 2329769 Number of protein genes: 2026 Number of RNA genes: 82 /// ENTRY T01152 Complete Genome NAME apo, A.profundus, 572546 DEFINITION Archaeoglobus profundus DSM 5631 ANNOTATION KOALA TAXONOMY TAX:572546 LINEAGE Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013741 LENGTH 1560622 PLASMID pArcpr01; Circular SEQUENCE RS:NC_013742 LENGTH 2801 STATISTICS Number of nucleotides: 1563423 Number of protein genes: 1823 Number of RNA genes: 53 /// ENTRY T01153 Complete Genome NAME cwo, C.woesei, 469383 DEFINITION Conexibacter woesei DSM 14684 ANNOTATION KOALA TAXONOMY TAX:469383 LINEAGE Bacteria; Actinobacteria; Rubrobacteridae; Solirubrobacterales; Conexibacteraceae; Conexibacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013739 LENGTH 6359369 STATISTICS Number of nucleotides: 6359369 Number of protein genes: 5914 Number of RNA genes: 51 /// ENTRY T01154 Complete Genome NAME htu, H.turkmenica, 543526 DEFINITION Haloterrigena turkmenica DSM 5511 ANNOTATION KOALA TAXONOMY TAX:543526 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloterrigena DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013743 LENGTH 3889038 PLASMID pHTUR01; Circular SEQUENCE RS:NC_013744 LENGTH 698495 PLASMID pHTUR02; Circular SEQUENCE RS:NC_013745 LENGTH 413648 PLASMID pHTUR03; Circular SEQUENCE RS:NC_013746 LENGTH 180781 PLASMID pHTUR04; Circular SEQUENCE RS:NC_013747 LENGTH 171943 PLASMID pHTUR05; Circular SEQUENCE RS:NC_013748 LENGTH 71062 PLASMID pHTUR06; Circular SEQUENCE RS:NC_013749 LENGTH 15815 STATISTICS Number of nucleotides: 5440782 Number of protein genes: 5113 Number of RNA genes: 64 /// ENTRY T01155 Complete Genome NAME kfl, K.flavida, 479435 DEFINITION Kribbella flavida DSM 17836 ANNOTATION KOALA TAXONOMY TAX:479435 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Propionibacterineae; Nocardioidaceae; Kribbella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013729 LENGTH 7579488 STATISTICS Number of nucleotides: 7579488 Number of protein genes: 6943 Number of RNA genes: 63 /// ENTRY T01156 Complete Genome NAME sli, S.linguale, 504472 DEFINITION Spirosoma linguale DSM 74 ANNOTATION KOALA TAXONOMY TAX:504472 LINEAGE Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Flexibacteraceae; Spirosoma DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013730 LENGTH 8078757 PLASMID pSLIN01; Circular SEQUENCE RS:NC_013731 LENGTH 189452 PLASMID pSLIN02; Circular SEQUENCE RS:NC_013732 LENGTH 146936 PLASMID pSLIN03; Circular SEQUENCE RS:NC_013733 LENGTH 36434 PLASMID pSLIN04; Circular SEQUENCE RS:NC_013734 LENGTH 9965 PLASMID pSLIN05; Circular SEQUENCE RS:NC_013735 LENGTH 8651 PLASMID pSLIN06; Circular SEQUENCE RS:NC_013736 LENGTH 7683 PLASMID pSLIN07; Circular SEQUENCE RS:NC_013737 LENGTH 7308 PLASMID pSLIN08; Circular SEQUENCE RS:NC_013738 LENGTH 6072 STATISTICS Number of nucleotides: 8491258 Number of protein genes: 6938 Number of RNA genes: 63 /// ENTRY T01157 Complete Genome NAME lmn, L.monocytogenes_08-5578, 653938 DEFINITION Listeria monocytogenes 08-5578 ANNOTATION KOALA TAXONOMY TAX:653938 LINEAGE Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria DATA_SOURCE RefSeq ORIGINAL_DB NML Canada CHROMOSOME Circular SEQUENCE RS:NC_013766 LENGTH 3032288 PLASMID pLM5578; Circular SEQUENCE RS:NC_013767 LENGTH 77054 STATISTICS Number of nucleotides: 3109342 Number of protein genes: 3088 Number of RNA genes: 73 /// ENTRY T01158 Complete Genome NAME sii, S.islandicus_L.D.8.5, 425944 DEFINITION Sulfolobus islandicus L.D.8.5 ANNOTATION KOALA TAXONOMY TAX:425944 LINEAGE Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013769 LENGTH 2722032 PLASMID pLD8501; Circular SEQUENCE RS:NC_013770 LENGTH 26615 STATISTICS Number of nucleotides: 2748647 Number of protein genes: 2948 Number of RNA genes: 48 /// ENTRY T01159 Complete Genome NAME cyu, Cyanobacterium_UCYN-A, 713887 DEFINITION Cyanobacterium UCYN-A ANNOTATION KOALA TAXONOMY TAX:713887 LINEAGE Bacteria; Cyanobacteria; Chroococcales DATA_SOURCE RefSeq ORIGINAL_DB UCSC CHROMOSOME Circular SEQUENCE RS:NC_013771 LENGTH 1443806 STATISTICS Number of nucleotides: 1443806 Number of protein genes: 1199 Number of RNA genes: 42 REFERENCE PMID:19008448 AUTHORS Zehr JP, et al. TITLE Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II. JOURNAL Science 322:1110-2 (2008) /// ENTRY T01160 Complete Genome NAME xal, X.albilineans, 29447 DEFINITION Xanthomonas albilineans ANNOTATION KOALA TAXONOMY TAX:29447 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_013722 LENGTH 3768695 STATISTICS Number of nucleotides: 3768695 Number of protein genes: 3114 Number of RNA genes: 58 REFERENCE PMID:20017926 AUTHORS Pieretti I, et al. TITLE The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem- limited Xanthomonadaceae. JOURNAL BMC Genomics 10:616 (2009) /// ENTRY T01161 Complete Genome NAME pno, P.nodorum, 321614 DEFINITION Phaeosphaeria nodorum SN15 ANNOTATION KOALA TAXONOMY TAX:321614 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Phaeosphaeria DATA_SOURCE RefSeq ORIGINAL_DB ACNFP STATISTICS Number of protein genes: 15998 Number of RNA genes: 29 REFERENCE PMID:18024570 AUTHORS Hane JK, et al. TITLE Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum. JOURNAL Plant Cell 19:3347-68 (2007) /// ENTRY T01162 Complete Genome NAME ppl, P.placenta, 561896 DEFINITION Postia placenta Mad-698-R ANNOTATION KOALA TAXONOMY TAX:561896 LINEAGE Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Polyporales; Postia DATA_SOURCE RefSeq ORIGINAL_DB JGI STATISTICS Number of protein genes: 9083 REFERENCE PMID:19193860 AUTHORS Martinez D, et al. TITLE Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. JOURNAL Proc Natl Acad Sci U S A 106:1954-9 (2009) /// ENTRY T01163 Complete Genome NAME gob, G.obscurus, 526225 DEFINITION Geodermatophilus obscurus DSM 43160 ANNOTATION KOALA TAXONOMY TAX:526225 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Geodermatophilaceae; Geodermatophilus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013757 LENGTH 5322497 STATISTICS Number of nucleotides: 5322497 Number of protein genes: 4810 Number of RNA genes: 59 /// ENTRY T01164 Complete Genome NAME lmy, L.monocytogenes_08-5923, 637381 DEFINITION Listeria monocytogenes 08-5923 ANNOTATION KOALA TAXONOMY TAX:637381 LINEAGE Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria DATA_SOURCE RefSeq ORIGINAL_DB NML Canada CHROMOSOME Circular SEQUENCE RS:NC_013768 LENGTH 2999054 STATISTICS Number of nucleotides: 2999054 Number of protein genes: 2966 Number of RNA genes: 73 /// ENTRY T01165 Complete Genome NAME bpf, B.pseudofirmus, 398511 DEFINITION Bacillus pseudofirmus OF4 ANNOTATION KOALA TAXONOMY TAX:398511 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_013791 LENGTH 3858997 PLASMID pBpOF4-01; Circular SEQUENCE RS:NC_013792 LENGTH 285222 PLASMID pBpOF4-02; Circular SEQUENCE RS:NC_013793 LENGTH 105029 STATISTICS Number of nucleotides: 4249248 Number of protein genes: 4335 Number of RNA genes: 99 /// ENTRY T01166 Complete Genome NAME mru, M.ruminantium, 634498 DEFINITION Methanobrevibacter ruminantium M1 ANNOTATION KOALA TAXONOMY TAX:634498 LINEAGE Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter DATA_SOURCE RefSeq ORIGINAL_DB PGGRC CHROMOSOME Circular SEQUENCE RS:NC_013790 LENGTH 2937203 STATISTICS Number of nucleotides: 2937203 Number of protein genes: 2217 Number of RNA genes: 66 REFERENCE PMID:20126622 AUTHORS Leahy SC, et al. TITLE The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions. JOURNAL PLoS One 5:e8926 (2010) /// ENTRY T01167 Complete Genome NAME hth, H.thermophilus, 608538 DEFINITION Hydrogenobacter thermophilus TK-6 ANNOTATION KOALA TAXONOMY TAX:608538 LINEAGE Bacteria; Aquificae; Aquificales; Aquificaceae; Hydrogenobacter DATA_SOURCE RefSeq ORIGINAL_DB U Tokyo CHROMOSOME Circular SEQUENCE RS:NC_013799 LENGTH 1743135 STATISTICS Number of nucleotides: 1743135 Number of protein genes: 1893 Number of RNA genes: 48 /// ENTRY T01168 Complete Genome NAME alv, A.vinosum, 572477 DEFINITION Allochromatium vinosum DSM 180 ANNOTATION KOALA TAXONOMY TAX:572477 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013851 LENGTH 3526903 PLASMID pALVIN01; Circular SEQUENCE RS:NC_013852 LENGTH 102242 PLASMID pALVIN02; Circular SEQUENCE RS:NC_013862 LENGTH 39929 STATISTICS Number of nucleotides: 3669074 Number of protein genes: 3220 Number of RNA genes: 64 /// ENTRY T01169 Complete Genome NAME azl, Azospirillum_B510, 137722 DEFINITION Azospirillum sp. B510 ANNOTATION KOALA TAXONOMY TAX:137722 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum DATA_SOURCE RefSeq ORIGINAL_DB RhizoBase CHROMOSOME Circular SEQUENCE RS:NC_013854 LENGTH 3311395 PLASMID pAB510a; Circular SEQUENCE RS:NC_013855 LENGTH 1455109 PLASMID pAB510b; Circular SEQUENCE RS:NC_013856 LENGTH 723779 PLASMID pAB510c; Circular SEQUENCE RS:NC_013857 LENGTH 681723 PLASMID pAB510d; Circular SEQUENCE RS:NC_013858 LENGTH 628837 PLASMID pAB510e; Circular SEQUENCE RS:NC_013859 LENGTH 537299 PLASMID pAB510f; Circular SEQUENCE RS:NC_013860 LENGTH 261596 STATISTICS Number of nucleotides: 7599738 Number of protein genes: 6309 Number of RNA genes: 108 REFERENCE PMID:20047946 AUTHORS Kaneko T, et al. TITLE Complete genomic structure of the cultivated rice endophyte Azospirillum sp. B510. JOURNAL DNA Res 17:37-50 (2010) /// ENTRY T01170 Complete Genome NAME kva, K.variicola, 640131 DEFINITION Klebsiella variicola At-22 ANNOTATION KOALA TAXONOMY TAX:640131 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013850 LENGTH 5458505 STATISTICS Number of nucleotides: 5458505 Number of protein genes: 5057 Number of RNA genes: 114 REFERENCE PMID:19965433 AUTHORS Pinto-Tomas AA, et al. TITLE Symbiotic nitrogen fixation in the fungus gardens of leaf-cutter ants. JOURNAL Science 326:1120-3 (2009) /// ENTRY T01171 Complete Genome NAME sga, S.gallolyticus, 637909 DEFINITION Streptococcus gallolyticus UCN34 ANNOTATION KOALA TAXONOMY TAX:637909 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB Pasteur CHROMOSOME Circular SEQUENCE RS:NC_013798 LENGTH 2350911 STATISTICS Number of nucleotides: 2350911 Number of protein genes: 2223 Number of RNA genes: 89 REFERENCE PMID:20139183 AUTHORS Rusniok C, et al. TITLE Genome sequence of Streptococcus gallolyticus: insights into its adaptation to the bovine rumen and its ability to cause endocarditis. JOURNAL J Bacteriol 192:2266-76 (2010) /// ENTRY T01172 Complete Genome NAME fpl, F.placidus, 589924 DEFINITION Ferroglobus placidus DSM 10642 ANNOTATION KOALA TAXONOMY TAX:589924 LINEAGE Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Ferroglobus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013849 LENGTH 2196266 STATISTICS Number of nucleotides: 2196266 Number of protein genes: 2480 Number of RNA genes: 55 /// ENTRY T01173 Complete Genome NAME smb, S.mitis_B6, 365659 DEFINITION Streptococcus mitis B6 ANNOTATION KOALA TAXONOMY TAX:365659 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB U Kaiserslautern CHROMOSOME Circular SEQUENCE RS:NC_013853 LENGTH 2146611 STATISTICS Number of nucleotides: 2146611 Number of protein genes: 2004 Number of RNA genes: 82 REFERENCE PMID:20195536 AUTHORS Denapaite D, et al. TITLE The genome of Streptococcus mitis B6--what is a commensal? JOURNAL PLoS One 5:e9426 (2010) /// ENTRY T01174 Complete Genome NAME tkm, Thioalkalivibrio_K90mix, 396595 DEFINITION Thioalkalivibrio sp. K90mix ANNOTATION KOALA TAXONOMY TAX:396595 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013889 LENGTH 2744800 PLASMID pTK9001 SEQUENCE RS:NC_013930 LENGTH 240256 STATISTICS Number of nucleotides: 2985056 Number of protein genes: 2855 Number of RNA genes: 55 /// ENTRY T01175 Complete Genome NAME mfs, Methanocaldococcus_FS406-22, 644281 DEFINITION Methanocaldococcus sp. FS406-22 ANNOTATION KOALA TAXONOMY TAX:644281 LINEAGE Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013887 LENGTH 1760939 PLASMID pFS01; Circular SEQUENCE RS:NC_013888 LENGTH 12197 STATISTICS Number of nucleotides: 1773136 Number of protein genes: 1816 Number of RNA genes: 44 /// ENTRY T01176 Complete Genome NAME nmg, N.magadii, 547559 DEFINITION Natrialba magadii ATCC 43099 ANNOTATION KOALA TAXONOMY TAX:547559 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natrialba DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013922 LENGTH 3751858 PLASMID pNMAG01; Circular SEQUENCE RS:NC_013923 LENGTH 378348 PLASMID pNMAG02; Circular SEQUENCE RS:NC_013924 LENGTH 254950 PLASMID pNMAG03; Circular SEQUENCE RS:NC_013925 LENGTH 58487 STATISTICS Number of nucleotides: 4443643 Number of protein genes: 4212 Number of RNA genes: 60 /// ENTRY T01177 Complete Genome NAME slg, S.lugdunensis, 698737 DEFINITION Staphylococcus lugdunensis HKU09-01 ANNOTATION KOALA TAXONOMY TAX:698737 LINEAGE Bacteria; Firmicutes; Bacillales; Staphylococcus DATA_SOURCE RefSeq ORIGINAL_DB U. Hong Kong CHROMOSOME Circular SEQUENCE RS:NC_013893 LENGTH 2658366 STATISTICS Number of nucleotides: 2658366 Number of protein genes: 2490 Number of RNA genes: 80 REFERENCE PMID:20047907 AUTHORS Tse H, et al. TITLE Complete genome sequence of Staphylococcus lugdunensis strain HKU09-01. JOURNAL J Bacteriol 192:1471-2 (2010) /// ENTRY T01178 Complete Genome NAME tit, T.italicus, 580331 DEFINITION Thermoanaerobacter italicus Ab9 ANNOTATION KOALA TAXONOMY TAX:580331 LINEAGE Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013921 LENGTH 2451061 STATISTICS Number of nucleotides: 2451061 Number of protein genes: 2270 Number of RNA genes: 71 /// ENTRY T01179 Complete Genome NAME tal, T.albus, 638303 DEFINITION Thermocrinis albus DSM 14484 ANNOTATION KOALA TAXONOMY TAX:638303 LINEAGE Bacteria; Aquificae; Aquificales; Aquificaceae; Thermocrinis DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013894 LENGTH 1500577 STATISTICS Number of nucleotides: 1500577 Number of protein genes: 1593 Number of RNA genes: 49 /// ENTRY T01180 Complete Genome NAME abi, A.boonei, 439481 DEFINITION Aciduliprofundum boonei T469 ANNOTATION KOALA TAXONOMY TAX:439481 LINEAGE Archaea; Euryarchaeota; Aciduliprofundum DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013926 LENGTH 1486778 STATISTICS Number of nucleotides: 1486778 Number of protein genes: 1544 Number of RNA genes: 37 /// ENTRY T01181 Complete Genome NAME clo, Clostridiales_BVAB3, 699246 DEFINITION Clostridiales genomosp. BVAB3 str. UPII9-5 ANNOTATION KOALA TAXONOMY TAX:699246 LINEAGE Bacteria; Firmicutes; Clostridia; Clostridiales DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_013895 LENGTH 1810248 STATISTICS Number of nucleotides: 1810248 Number of protein genes: 1526 Number of RNA genes: 54 /// ENTRY T01182 Complete Genome NAME deg, Dehalococcoides_GT, 633145 DEFINITION Dehalococcoides sp. GT ANNOTATION KOALA TAXONOMY TAX:633145 LINEAGE Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013890 LENGTH 1360154 STATISTICS Number of nucleotides: 1360154 Number of protein genes: 1417 Number of RNA genes: 51 /// ENTRY T01183 Complete Genome NAME llo, L.longbeachae, 661367 DEFINITION Legionella longbeachae NSW150 ANNOTATION KOALA TAXONOMY TAX:661367 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella DATA_SOURCE RefSeq ORIGINAL_DB Pasteur CHROMOSOME Circular SEQUENCE RS:NC_013861 LENGTH 4077332 STATISTICS Number of nucleotides: 4077332 Number of protein genes: 3403 Number of RNA genes: 57 /// ENTRY T01184 Complete Genome NAME lsg, L.seeligeri, 683837 DEFINITION Listeria seeligeri SLCC3954 (serovar 1/2b) ANNOTATION KOALA TAXONOMY TAX:683837 LINEAGE Bacteria; Firmicutes; Bacillales; Listeriaceae; Listeria DATA_SOURCE RefSeq ORIGINAL_DB JLU Giessen CHROMOSOME Circular SEQUENCE RS:NC_013891 LENGTH 2797636 STATISTICS Number of nucleotides: 2797636 Number of protein genes: 2710 Number of RNA genes: 85 REFERENCE PMID:20061480 AUTHORS Steinweg C, et al. TITLE Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria. JOURNAL J Bacteriol 192:1473-4 (2010) /// ENTRY T01185 Complete Genome NAME smc, S.mutans_NN2025, 511691 DEFINITION Streptococcus mutans NN2025 ANNOTATION KOALA TAXONOMY TAX:511691 LINEAGE Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus DATA_SOURCE RefSeq ORIGINAL_DB TMDU CHROMOSOME SEQUENCE RS:NC_013928 LENGTH 2013587 STATISTICS Number of nucleotides: 2013587 Number of protein genes: 1895 Number of RNA genes: 80 REFERENCE PMID:19656368 AUTHORS Maruyama F, et al. TITLE Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content. JOURNAL BMC Genomics 10:358 (2009) /// ENTRY T01186 Complete Genome NAME xbo, X.bovienii, 406818 DEFINITION Xenorhabdus bovienii SS-2004 ANNOTATION KOALA TAXONOMY TAX:406818 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus DATA_SOURCE RefSeq ORIGINAL_DB UM2 CHROMOSOME Circular SEQUENCE RS:NC_013892 LENGTH 4225498 STATISTICS Number of nucleotides: 4225498 Number of protein genes: 4260 Number of RNA genes: 113 /// ENTRY T01187 Complete Genome NAME scb, S.scabiei, 680198 DEFINITION Streptomyces scabiei 87.22 ANNOTATION KOALA TAXONOMY TAX:680198 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME SEQUENCE RS:NC_013929 LENGTH 10148695 STATISTICS Number of nucleotides: 10148695 Number of protein genes: 8746 Number of RNA genes: 95 /// ENTRY T01188 Complete Genome NAME ddf, D.desulfuricans_SSM1, 639282 DEFINITION Deferribacter desulfuricans SSM1 ANNOTATION KOALA TAXONOMY TAX:639282 LINEAGE Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter DATA_SOURCE RefSeq ORIGINAL_DB JAMSTEC CHROMOSOME Circular SEQUENCE RS:NC_013939 LENGTH 2234389 PLASMID pDF308 (megaplasmid); Circular SEQUENCE RS:NC_013940 LENGTH 308544 STATISTICS Number of nucleotides: 2542933 Number of protein genes: 2374 Number of RNA genes: 51 REFERENCE PMID:20189949 AUTHORS Takaki Y, et al. TITLE Bacterial Lifestyle in a Deep-sea Hydrothermal Vent Chimney Revealed by the Genome Sequence of the Thermophilic Bacterium Deferribacter desulfuricans SSM1. JOURNAL DNA Res (2010) /// ENTRY T01189 Complete Genome NAME dap, D.acetiphilus, 522772 DEFINITION Denitrovibrio acetiphilus DSM 12809 ANNOTATION KOALA TAXONOMY TAX:522772 LINEAGE Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Denitrovibrio DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013943 LENGTH 3222077 STATISTICS Number of nucleotides: 3222077 Number of protein genes: 2964 Number of RNA genes: 52 /// ENTRY T01190 Complete Genome NAME eok, E.coli_O55_H7, 701177 DEFINITION Escherichia coli O55:H7 str. CB9615 ANNOTATION KOALA TAXONOMY TAX:701177 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia DATA_SOURCE RefSeq ORIGINAL_DB Nankai China CHROMOSOME Circular SEQUENCE RS:NC_013941 LENGTH 5386352 PLASMID pO55; Circular SEQUENCE RS:NC_013942 LENGTH 66001 STATISTICS Number of nucleotides: 5452353 Number of protein genes: 5121 Number of RNA genes: 174 REFERENCE PMID:20090843 AUTHORS Zhou Z, et al. TITLE Derivation of Escherichia coli O157:H7 from its O55:H7 precursor. JOURNAL PLoS One 5:e8700 (2010) /// ENTRY T01191 Complete Genome NAME hms, H.mustelae, 679897 DEFINITION Helicobacter mustelae 12198 ANNOTATION KOALA TAXONOMY TAX:679897 LINEAGE Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_013949 LENGTH 1578097 STATISTICS Number of nucleotides: 1578097 Number of protein genes: 1400 /// ENTRY T01192 Complete Genome NAME mal, M.agalactiae_5632, 2110 DEFINITION Mycoplasma agalactiae 5632 ANNOTATION KOALA TAXONOMY TAX:2110 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_013948 LENGTH 1006702 STATISTICS Number of nucleotides: 1006702 Number of protein genes: 813 Number of RNA genes: 42 /// ENTRY T01193 Complete Genome NAME mrb, M.ruber, 504728 DEFINITION Meiothermus ruber DSM 1279 ANNOTATION KOALA TAXONOMY TAX:504728 LINEAGE Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013946 LENGTH 3097457 STATISTICS Number of nucleotides: 3097457 Number of protein genes: 3014 Number of RNA genes: 53 /// ENTRY T01194 Complete Genome NAME sna, S.nassauensis, 446470 DEFINITION Stackebrandtia nassauensis DSM 44728 ANNOTATION KOALA TAXONOMY TAX:446470 LINEAGE Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Glycomycineae; Glycomycetaceae; Stackebrandtia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013947 LENGTH 6841557 STATISTICS Number of nucleotides: 6841557 Number of protein genes: 6379 Number of RNA genes: 55 /// ENTRY T01195 Complete Genome NAME pam, P.ananatis, 706191 DEFINITION Pantoea ananatis LMG 20103 ANNOTATION KOALA TAXONOMY TAX:706191 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea DATA_SOURCE RefSeq ORIGINAL_DB Pretoria CHROMOSOME Circular SEQUENCE RS:NC_013956 LENGTH 4690298 STATISTICS Number of nucleotides: 4690298 Number of protein genes: 4237 Number of RNA genes: 103 /// ENTRY T01196 Complete Genome NAME slt, S.lithotrophicus, 580332 DEFINITION Sideroxydans lithotrophicus ES-1 ANNOTATION KOALA TAXONOMY TAX:580332 LINEAGE Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013959 LENGTH 3003656 STATISTICS Number of nucleotides: 3003656 Number of protein genes: 2980 Number of RNA genes: 54 /// ENTRY T01197 Complete Genome NAME eam, E.amylovora, 552 DEFINITION Erwinia amylovora ANNOTATION KOALA TAXONOMY TAX:552 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia DATA_SOURCE RefSeq ORIGINAL_DB Bielefeld CHROMOSOME Circular SEQUENCE RS:NC_013961 LENGTH 3805573 STATISTICS Number of nucleotides: 3805573 Number of protein genes: 3677 Number of RNA genes: 99 REFERENCE PMID:20192826 AUTHORS Smits TH, et al. TITLE Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp. JOURNAL Mol Plant Microbe Interact 23:384-93 (2010) /// ENTRY T01198 Complete Genome NAME nhl, N.halophilus, 472759 DEFINITION Nitrosococcus halophilus Nc4 ANNOTATION KOALA TAXONOMY TAX:472759 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_013960 LENGTH 4079427 PLASMID pNHAL01; Circular SEQUENCE RS:NC_013958 LENGTH 65833 STATISTICS Number of nucleotides: 4145260 Number of protein genes: 3817 Number of RNA genes: 55 /// ENTRY T01199 Complete Genome NAME eay, E.amylovora_ATCC49946, 716540 DEFINITION Erwinia amylovora ATCC 49946 ANNOTATION KOALA TAXONOMY TAX:716540 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia DATA_SOURCE RefSeq ORIGINAL_DB Sanger CHROMOSOME Circular SEQUENCE RS:NC_013971 LENGTH 3805874 PLASMID p1; Circular SEQUENCE RS:NC_013972 LENGTH 28243 PLASMID p2; Circular SEQUENCE RS:NC_013973 LENGTH 71487 STATISTICS Number of nucleotides: 3905604 Number of protein genes: 3565 Number of RNA genes: 100 REFERENCE PMID:20118253 AUTHORS Sebaihia M, et al. TITLE Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946. JOURNAL J Bacteriol 192:2020-1 (2010) /// ENTRY T01200 Complete Genome NAME hvo, H.volcanii, 309800 DEFINITION Haloferax volcanii DS2 ANNOTATION KOALA TAXONOMY TAX:309800 LINEAGE Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloferax DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_013967 LENGTH 2847757 PLASMID pHV1; Circular SEQUENCE RS:NC_013968 LENGTH 85092 PLASMID pHV2; Circular SEQUENCE RS:NC_013965 LENGTH 6359 PLASMID pHV3; Circular SEQUENCE RS:NC_013964 LENGTH 437906 PLASMID pHV4; Circular SEQUENCE RS:NC_013966 LENGTH 635786 STATISTICS Number of nucleotides: 4012900 Number of protein genes: 4015 Number of RNA genes: 49 REFERENCE PMID:20333302 AUTHORS Hartman AL, et al. TITLE The complete genome sequence of Haloferax volcanii DS2, a model archaeon. JOURNAL PLoS One 5:e9605 (2010) /// ENTRY T01201 Complete Genome NAME sjp, S.japonicum, 452662 DEFINITION Sphingobium japonicum UT26S ANNOTATION none TAXONOMY TAX:452662 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium DATA_SOURCE RefSeq ORIGINAL_DB NITE CHROMOSOME 1; Circular SEQUENCE RS:NC_014006 LENGTH 3514822 CHROMOSOME 2; Circular SEQUENCE RS:NC_014013 LENGTH 681892 PLASMID pCHQ1; Circular SEQUENCE RS:NC_014007 LENGTH 190974 PLASMID pUT1; Circular SEQUENCE RS:NC_014005 LENGTH 31776 PLASMID pUT2; Circular SEQUENCE RS:NC_014009 LENGTH 5398 STATISTICS Number of nucleotides: 4424862 Number of protein genes: 4394 Number of RNA genes: 67 /// ENTRY T01202 Complete Genome NAME aco, A.colombiense, 572547 DEFINITION Aminobacterium colombiense DSM 12261 ANNOTATION none TAXONOMY TAX:572547 LINEAGE Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminobacterium DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_014011 LENGTH 1980592 STATISTICS Number of nucleotides: 1980592 Number of protein genes: 1876 Number of RNA genes: 58 /// ENTRY T01203 Complete Genome NAME smh, S.muelleri_DMIN, 641892 DEFINITION Candidatus Sulcia muelleri DMIN ANNOTATION none TAXONOMY TAX:641892 LINEAGE Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Candidatus Sulcia DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_014004 LENGTH 243933 STATISTICS Number of nucleotides: 243933 Number of protein genes: 226 Number of RNA genes: 35 /// ENTRY T01204 Complete Genome NAME caa, C.akajimensis, 583355 DEFINITION Coraliomargarita akajimensis DSM 45221 ANNOTATION none TAXONOMY TAX:583355 LINEAGE Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_014008 LENGTH 3750771 STATISTICS Number of nucleotides: 3750771 Number of protein genes: 3120 Number of RNA genes: 56 /// ENTRY T01205 Complete Genome NAME mcd, M.crocodyli, 512564 DEFINITION Mycoplasma crocodyli MP145 ANNOTATION none TAXONOMY TAX:512564 LINEAGE Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_014014 LENGTH 934379 STATISTICS Number of nucleotides: 934379 Number of protein genes: 689 Number of RNA genes: 43 /// ENTRY T01206 Complete Genome NAME svo, S.violacea, 637905 DEFINITION Shewanella violacea DSS12 ANNOTATION none TAXONOMY TAX:637905 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella DATA_SOURCE RefSeq ORIGINAL_DB NAIST CHROMOSOME Circular SEQUENCE RS:NC_014012 LENGTH 4962103 STATISTICS Number of nucleotides: 4962103 Number of protein genes: 4346 Number of RNA genes: 169 /// ENTRY T01207 Complete Genome NAME apb, Alphaproteobacterium_IMCC1322, 488538 DEFINITION Alpha proteobacterium IMCC1322 ANNOTATION none TAXONOMY TAX:488538 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster DATA_SOURCE RefSeq ORIGINAL_DB Inha U CHROMOSOME Circular SEQUENCE RS:NC_014010 LENGTH 2753527 STATISTICS Number of nucleotides: 2753527 Number of protein genes: 2543 Number of RNA genes: 39 /// ENTRY T01208 Complete Genome NAME bmq, B.megaterium_QM_B1551, 545693 DEFINITION Bacillus megaterium QM B1551 ANNOTATION none TAXONOMY TAX:545693 LINEAGE Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_014019 LENGTH 5097129 PLASMID pBM100; Circular SEQUENCE RS:NC_010008 LENGTH 5428 PLASMID pBM200; Circular SEQUENCE RS:NC_010009 LENGTH 9098 PLASMID pBM300; Circular SEQUENCE RS:NC_010010 LENGTH 26587 PLASMID pBM400; Circular SEQUENCE RS:NC_004604 LENGTH 53865 PLASMID pBM500; Circular SEQUENCE RS:NC_014025 LENGTH 66985 PLASMID pBM600; Circular SEQUENCE RS:NC_014031 LENGTH 99694 PLASMID pBM700; Circular SEQUENCE RS:NC_014023 LENGTH 164406 STATISTICS Number of nucleotides: 5523192 Number of protein genes: 5576 Number of RNA genes: 158 /// ENTRY T01209 Complete Genome NAME srm, S.ruber_M8, 146919 DEFINITION Salinibacter ruber ANNOTATION none TAXONOMY TAX:146919 LINEAGE Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Rhodothermaceae; Salinibacter DATA_SOURCE RefSeq ORIGINAL_DB Genoscope CHROMOSOME Circular SEQUENCE RS:NC_014032 LENGTH 3619447 STATISTICS Number of nucleotides: 3619447 Number of protein genes: 3085 Number of RNA genes: 45 /// ENTRY T01210 Complete Genome NAME ypz, Y.pestis_Z176003, 637386 DEFINITION Yersinia pestis Z176003 ANNOTATION none TAXONOMY TAX:637386 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia DATA_SOURCE RefSeq ORIGINAL_DB China CDC CHROMOSOME Circular SEQUENCE RS:NC_014029 LENGTH 4553586 PLASMID pMT1; Circular SEQUENCE RS:NC_014022 LENGTH 94251 PLASMID pCD1; Circular SEQUENCE RS:NC_014017 LENGTH 68342 PLASMID pPCP1; Circular SEQUENCE RS:NC_014027 LENGTH 9609 STATISTICS Number of nucleotides: 4725788 Number of protein genes: 3693 Number of RNA genes: 87 /// ENTRY T01211 Complete Genome NAME mmh, M.mahii, 547558 DEFINITION Methanohalophilus mahii DSM 5219 ANNOTATION none TAXONOMY TAX:547558 LINEAGE Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalophilus DATA_SOURCE RefSeq ORIGINAL_DB JGI CHROMOSOME Circular SEQUENCE RS:NC_014002 LENGTH 2012424 STATISTICS Number of nucleotides: 2012424 Number of protein genes: 1987 Number of RNA genes: 63 /// ENTRY T01212 Complete Genome NAME pru, P.ruminicola, 264731 DEFINITION Prevotella ruminicola 23 ANNOTATION none TAXONOMY TAX:264731 LINEAGE Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella DATA_SOURCE RefSeq ORIGINAL_DB JCVI CHROMOSOME Circular SEQUENCE RS:NC_014033 LENGTH 3619559 STATISTICS Number of nucleotides: 3619559 Number of protein genes: 0 /// ENTRY T01213 Complete Genome NAME rcp, R.capsulatus, 272942 DEFINITION Rhodobacter capsulatus SB1003 ANNOTATION none TAXONOMY TAX:272942 LINEAGE Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter DATA_SOURCE RefSeq CHROMOSOME Circular SEQUENCE RS:NC_014034 LENGTH 3738958 PLASMID pRCB133; Circular SEQUENCE RS:NC_014035 LENGTH 132962 STATISTICS Number of nucleotides: 3871920 Number of protein genes: 0 /// ENTRY T10001 Draft Genome NAME dfru, F.rubripes, FUGRU, 31033 DEFINITION Fugu rubripes (torafugu), draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:31033 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu DATA_SOURCE Ensembl ORIGINAL_DB Ensembl STATISTICS Number of protein genes: 22041 REFERENCE PMID:12142439 AUTHORS Aparicio S, et al. TITLE Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. JOURNAL Science 297:1301-10 (2002) /// ENTRY T10002 Draft Genome NAME dsmi, S.mikatae, SACMI, 226126 DEFINITION Saccharomyces mikatae, draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:226126 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces DATA_SOURCE SGD ORIGINAL_DB MIT STATISTICS Number of protein genes: 8972 REFERENCE PMID:12748633 AUTHORS Kellis M, et al. TITLE Sequencing and comparison of yeast species to identify genes and regulatory elements. JOURNAL Nature 423:241-54 (2003) /// ENTRY T10003 Draft Genome NAME dsrd, S.paradoxus, SACPA, 226125 DEFINITION Saccharomyces paradoxus, draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:226125 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces DATA_SOURCE SGD ORIGINAL_DB MIT STATISTICS Number of protein genes: 8908 REFERENCE PMID:12748633 AUTHORS Kellis M, et al. TITLE Sequencing and comparison of yeast species to identify genes and regulatory elements. JOURNAL Nature 423:241-54 (2003) /// ENTRY T10004 Draft Genome NAME dsba, S.bayanus, 226127 DEFINITION Saccharomyces bayanus, draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:226127 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces DATA_SOURCE SGD ORIGINAL_DB MIT STATISTICS Number of protein genes: 9344 REFERENCE PMID:12748633 AUTHORS Kellis M, et al. TITLE Sequencing and comparison of yeast species to identify genes and regulatory elements. JOURNAL Nature 423:241-54 (2003) /// ENTRY T10005 Draft Genome NAME dtni, T.nigroviridis, TETNG, 99883 DEFINITION Tetraodon nigroviridis, draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:99883 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Tetraodon DATA_SOURCE GenBank ORIGINAL_DB Genoscope STATISTICS Number of protein genes: 27918 REFERENCE PMID:15496914 AUTHORS Jaillon O, et al. TITLE Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. JOURNAL Nature 431:946-57 (2004) /// ENTRY T10006 Draft Genome NAME dbmo, B.mori, BOMMO, 7091 DEFINITION Bombyx mori (domestic silkworm), draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:7091 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx DATA_SOURCE Beijing ORIGINAL_DB SilkDB STATISTICS Number of protein genes: 21302 REFERENCE PMID:15591204 AUTHORS Xia Q, et al. TITLE A draft sequence for the genome of the domesticated silkworm (Bombyx mori). JOURNAL Science 306:1937-40 (2004) /// ENTRY T10008 Draft Genome NAME dkwa, K.waltii, 262981 DEFINITION Kluyveromyces waltii NCYC 2644, draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:262981 LINEAGE Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea DATA_SOURCE Nature ORIGINAL_DB MIT STATISTICS Number of protein genes: 5213 REFERENCE PMID:15004568 AUTHORS Kellis M, et al. TITLE Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. JOURNAL Nature 428:617-24 (2004) /// ENTRY T10009 Draft Genome NAME dota, O.tauri, OSTTA, 70448 DEFINITION Ostreococcus tauri, draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:70448 LINEAGE Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae; Mamiellales; Ostreococcus DATA_SOURCE Ghent ORIGINAL_DB Ghent STATISTICS Number of protein genes: 7885 REFERENCE PMID:16868079 AUTHORS Derelle E, et al. TITLE Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. JOURNAL Proc Natl Acad Sci U S A 103:11647-52 (2006) /// ENTRY T10011 Draft Genome NAME dola, O.latipes, ORYLA, 8090 DEFINITION Oryzias latipes (Japanese medaka), draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:8090 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias DATA_SOURCE Ensembl ORIGINAL_DB NIG U Tokyo Ensembl STATISTICS Number of protein genes: 25084 REFERENCE PMID:17554307 AUTHORS Kasahara M, et al. TITLE The medaka draft genome and insights into vertebrate genome evolution. JOURNAL Nature 447:714-9 (2007) /// ENTRY T10013 Draft Genome NAME dpch, P.chrysosporium, PHACH, 273507 DEFINITION Phanerochaete chrysosporium, draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:273507 LINEAGE Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Corticiales; Corticiaceae; Phanerochaete DATA_SOURCE JGI ORIGINAL_DB JGI STATISTICS Number of protein genes: 10048 REFERENCE PMID:15122302 AUTHORS Martinez D, et al. TITLE Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. JOURNAL Nat Biotechnol 22:695-700 (2004) /// ENTRY T10014 Draft Genome NAME dapi, A.pisum_AphidBase, 7029 DEFINITION Acyrthosiphon pisum (pea aphid) (gene model taken from AphidBase) ANNOTATION KAAS BLAST TAXONOMY TAX:7029 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidiformes; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon DATA_SOURCE AphidBase ORIGINAL_DB AphidBase REFERENCE PMID:20186266 AUTHORS International Aphid Genomics Consortium. TITLE Genome sequence of the pea aphid Acyrthosiphon pisum. JOURNAL PLoS Biol 8:e1000313 (2010) /// ENTRY T10015 Draft Genome NAME dosa, O.sativa_RAPDB, 39947 DEFINITION Oryza sativa japonica (Japanese rice) (gene model taken from RAPDB) ANNOTATION KAAS BLAST TAXONOMY TAX:39947 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza DATA_SOURCE RAP-DB ORIGINAL_DB RAP-DB /// ENTRY T10016 Draft Genome NAME dphu, P.humanus, 121224 DEFINITION Pediculus humanus (human body louse), draft genome ANNOTATION KAAS BLAST TAXONOMY TAX:121224 LINEAGE Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Phthiraptera; Anoplura; Pediculidae; Pediculus DATA_SOURCE VectorBase ORIGINAL_DB VectorBase /// ENTRY T20001 Est Genome NAME etae, T.aestivum_est, WHEAT, 4565 DEFINITION Triticum aestivum (bread wheat) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4565 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Pooideae; Triticeae; Triticum DATA_SOURCE dbEST /// ENTRY T20002 Est Genome NAME ezma, Z.mays_est, MAIZE, 4577 DEFINITION Zea mays (maize) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4577 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Zea DATA_SOURCE dbEST /// ENTRY T20003 Est Genome NAME ehvu, H.vulgare_est, HORVU, 4513 DEFINITION Hordeum vulgare (barley) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4513 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Pooideae; Triticeae; Hordeum DATA_SOURCE dbEST /// ENTRY T20004 Est Genome NAME egma, G.max_est, SOYBN, 3847 DEFINITION Glycine max (soybean) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3847 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine DATA_SOURCE dbEST /// ENTRY T20005 Est Genome NAME eath, A.thaliana_est, ARATH, 3702 DEFINITION Arabidopsis thaliana (thale cress) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3702 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis DATA_SOURCE dbEST /// ENTRY T20006 Est Genome NAME eosa, O.sativa_est, ORYSJ, 39947 DEFINITION Oryza sativa japonica (Japanese rice) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:39947 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza DATA_SOURCE dbEST /// ENTRY T20007 Est Genome NAME esof, S.officinarum_est, SACOF, 4547 DEFINITION Saccharum officinarum (sugarcane) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4547 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Saccharum; Saccharum officinarum complex DATA_SOURCE dbEST /// ENTRY T20008 Est Genome NAME esbi, S.bicolor_est, SORBI, 4558 DEFINITION Sorghum bicolor (sorghum) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4558 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Sorghum DATA_SOURCE dbEST /// ENTRY T20009 Est Genome NAME emtr, M.truncatula_est, MEDTR, 3880 DEFINITION Medicago truncatula (barrel medic) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3880 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago DATA_SOURCE dbEST /// ENTRY T20010 Est Genome NAME epta, P.taeda_est, PINTA, 3352 DEFINITION Pinus taeda (loblolly pine) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3352 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; Pinus DATA_SOURCE dbEST /// ENTRY T20011 Est Genome NAME estu, S.tuberosum_est, SOLTU, 4113 DEFINITION Solanum tuberosum (potato) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4113 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum DATA_SOURCE dbEST /// ENTRY T20012 Est Genome NAME esly, S.lycopersicum_est, SOLLC, 4081 DEFINITION Solanum lycopersicum (tomato) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4081 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon DATA_SOURCE dbEST /// ENTRY T20013 Est Genome NAME evvi, V.vinifera_est, VITVI, 29760 DEFINITION Vitis vinifera (wine grape) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:29760 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; Vitaceae; Vitis DATA_SOURCE dbEST /// ENTRY T20014 Est Genome NAME elja, L.japonicus_est, LOTJA, 34305 DEFINITION Lotus japonicus (lotus) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:34305 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus DATA_SOURCE dbEST /// ENTRY T20016 Est Genome NAME eppp, P.patens_patens_est, PHYPA, 145481 DEFINITION Physcomitrella patens subsp. patens (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:145481 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella DATA_SOURCE dbEST /// ENTRY T20017 Est Genome NAME elst, L.sativa_est, LACSA, 4236 DEFINITION Lactuca sativa (lettuce) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4236 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactuca DATA_SOURCE dbEST /// ENTRY T20018 Est Genome NAME eptp, P.tremula_est, POPTN, 113636 DEFINITION Populus tremula (European aspen) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:113636 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Salicaceae; Saliceae; Populus DATA_SOURCE dbEST /// ENTRY T20019 Est Genome NAME egra, G.raimondii_est, GOSRA, 29730 DEFINITION Gossypium raimondii (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:29730 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Malvales; Malvaceae; Malvoideae; Gossypium DATA_SOURCE dbEST /// ENTRY T20020 Est Genome NAME ehan, H.annuus_est, HELAN, 4232 DEFINITION Helianthus annuus (common sunflower) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4232 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae; Helianthus DATA_SOURCE dbEST /// ENTRY T20021 Est Genome NAME epgl, P.glauca_est, PICGL, 3330 DEFINITION Picea glauca (white spruce) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3330 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Picea DATA_SOURCE dbEST /// ENTRY T20022 Est Genome NAME epop, P.trichocarpa_est, POPTR, 3694 DEFINITION Populus trichocarpa (black cottonwood) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3694 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Salicaceae; Saliceae; Populus DATA_SOURCE dbEST /// ENTRY T20023 Est Genome NAME ecsi, C.sinensis_est, CITSI, 2711 DEFINITION Citrus sinensis (Valencia orange) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:2711 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Sapindales; Rutaceae; Citrus DATA_SOURCE dbEST /// ENTRY T20024 Est Genome NAME egar, G.arboreum_est, GOSAR, 29729 DEFINITION Gossypium arboreum (tree cotton) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:29729 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Malvales; Malvaceae; Malvoideae; Gossypium DATA_SOURCE dbEST /// ENTRY T20025 Est Genome NAME ebna, B.napus_est, BRANA, 3708 DEFINITION Brassica napus (rape) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3708 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Brassica DATA_SOURCE dbEST /// ENTRY T20026 Est Genome NAME esja, S.japonicum_est, SCHJA, 6182 DEFINITION Schistosoma japonicum (fluke) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:6182 LINEAGE Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma DATA_SOURCE dbEST /// ENTRY T20027 Est Genome NAME ecsv, C.savignyi_est, CIOSA, 51511 DEFINITION Ciona savignyi (sea squirt) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:51511 LINEAGE Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona DATA_SOURCE dbEST ORIGINAL_DB MIT /// ENTRY T20028 Est Genome NAME espu, S.purpuratus_est, STRPU, 7668 DEFINITION Strongylocentrotus purpuratus (purple sea urchin) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:7668 LINEAGE Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus DATA_SOURCE dbEST /// ENTRY T20029 Est Genome NAME emte, M.tectiformis_est, 30286 DEFINITION Molgula tectiformis (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:30286 LINEAGE Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Stolidobranchia; Molgulidae; Molgula DATA_SOURCE dbEST /// ENTRY T20031 Est Genome NAME ebvl, B.vulgaris_est, BETVU, 161934 DEFINITION Beta vulgaris (beet) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:161934 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Caryophyllales; Amaranthaceae; Beta DATA_SOURCE dbEST /// ENTRY T20032 Est Genome NAME ecan, C.annuum_est, CAPAN, 4072 DEFINITION Capsicum annuum (chile pepper) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4072 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum DATA_SOURCE dbEST /// ENTRY T20033 Est Genome NAME eees, E.esula_est, EUPES, 3993 DEFINITION Euphorbia esula (spurge) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3993 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Euphorbiaceae; Euphorbioideae; Euphorbieae; Euphorbia DATA_SOURCE dbEST /// ENTRY T20034 Est Genome NAME efar, F.arundinacea_est, FESAR, 4606 DEFINITION Festuca arundinacea (tall fescue) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4606 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Pooideae; Poeae; Loliinae; Festuca DATA_SOURCE dbEST /// ENTRY T20035 Est Genome NAME eghi, G.hirsutum_est, GOSHI, 3635 DEFINITION Gossypium hirsutum (upland cotton) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3635 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Malvales; Malvaceae; Malvoideae; Gossypium DATA_SOURCE dbEST /// ENTRY T20036 Est Genome NAME eini, I.nil_est, IPONI, 35883 DEFINITION Ipomoea nil (Japanese morning glory) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:35883 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea DATA_SOURCE dbEST /// ENTRY T20037 Est Genome NAME elpe, L.perennis_est, 43195 DEFINITION Lactuca perennis (blue lettuce) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:43195 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactuca DATA_SOURCE dbEST /// ENTRY T20038 Est Genome NAME elsi, L.saligna_est, 75948 DEFINITION Lactuca saligna (willowleaf lettuce) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:75948 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactuca DATA_SOURCE dbEST /// ENTRY T20039 Est Genome NAME elvi, L.virosa_est, 75947 DEFINITION Lactuca virosa (wild lettuce) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:75947 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactuca DATA_SOURCE dbEST /// ENTRY T20040 Est Genome NAME emec, M.esculenta_est, MANES, 3983 DEFINITION Manihot esculenta (cassava) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3983 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot DATA_SOURCE dbEST /// ENTRY T20041 Est Genome NAME enbe, N.benthamiana_est, NICBE, 4100 DEFINITION Nicotiana benthamiana (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4100 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana DATA_SOURCE dbEST /// ENTRY T20042 Est Genome NAME enta, N.tabacum_est, TOBAC, 4097 DEFINITION Nicotiana tabacum (tobacco) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4097 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana DATA_SOURCE dbEST /// ENTRY T20043 Est Genome NAME eosi, O.sativa_indica_est, ORYSI, 39946 DEFINITION Oryza sativa indica (Indian rice) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:39946 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza DATA_SOURCE dbEST /// ENTRY T20045 Est Genome NAME epps, P.persica_est, PRUPE, 3760 DEFINITION Prunus persica (peach) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3760 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Rosales; Rosaceae; Amygdaloideae; Prunus DATA_SOURCE dbEST /// ENTRY T20046 Est Genome NAME eppi, P.pinaster_est, PINPS, 71647 DEFINITION Pinus pinaster (maritime pine) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:71647 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; Pinus DATA_SOURCE dbEST /// ENTRY T20047 Est Genome NAME epsi, P.sitchensis_est, PICSI, 3332 DEFINITION Picea sitchensis (sitka spruce) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3332 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Picea DATA_SOURCE dbEST /// ENTRY T20050 Est Genome NAME eaan, A.annua_est, ARTAN, 35608 DEFINITION Artemisia annua (sweet wormwood) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:35608 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisia DATA_SOURCE dbEST /// ENTRY T20051 Est Genome NAME eafp, A.formosa_est, 338618 DEFINITION Aquilegia formosa x Aquilegia pubescens (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:338618 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Ranunculales; Ranunculaceae; Aquilegia DATA_SOURCE dbEST /// ENTRY T20052 Est Genome NAME eamj, A.majus_est, ANTMA, 4151 DEFINITION Antirrhinum majus (snapdragon) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:4151 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Lamiales; Plantaginaceae; Antirrhineae; Antirrhinum DATA_SOURCE dbEST /// ENTRY T20053 Est Genome NAME eatr, A.trichopoda_est, AMBTC, 13333 DEFINITION Amborella trichopoda (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:13333 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella DATA_SOURCE dbEST /// ENTRY T20054 Est Genome NAME ebrp, B.rapa_est, BRARP, 51351 DEFINITION Brassica rapa subsp. pekinensis (Chinese cabbage) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:51351 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Brassica DATA_SOURCE dbEST /// ENTRY T20055 Est Genome NAME eccl, C.clementina_est, 85681 DEFINITION Citrus clementina (mandarin orange) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:85681 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Sapindales; Rutaceae; Citrus DATA_SOURCE dbEST /// ENTRY T20056 Est Genome NAME eccn, C.canephora_est, COFCA, 49390 DEFINITION Coffea canephora (robusta coffee) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:49390 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea DATA_SOURCE dbEST /// ENTRY T20057 Est Genome NAME ecre, C.reinhardtii_est, CHLRE, 3055 DEFINITION Chlamydomonas reinhardtii (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3055 LINEAGE Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas DATA_SOURCE dbEST /// ENTRY T20058 Est Genome NAME else, L.serriola_est, 75943 DEFINITION Lactuca serriola (prickly lettuce) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:75943 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactuca DATA_SOURCE dbEST /// ENTRY T20059 Est Genome NAME emcr, M.crystallinum_est, MESCR, 3544 DEFINITION Mesembryanthemum crystallinum (common ice plant) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3544 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Caryophyllales; Aizoaceae; Mesembryanthemum DATA_SOURCE dbEST /// ENTRY T20060 Est Genome NAME emdm, M.domestica_est, MALDO, 3750 DEFINITION Malus x domestica (apple tree) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3750 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Rosales; Rosaceae; Maloideae; Malus DATA_SOURCE dbEST /// ENTRY T20061 Est Genome NAME empm, M.polymorpha_est, MARPO, 3197 DEFINITION Marchantia polymorpha (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3197 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Marchantiophyta; Superclass II; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia DATA_SOURCE dbEST /// ENTRY T20063 Est Genome NAME eptd, P.trichocarpa_deltoides_est, POPJC, 3695 DEFINITION Populus trichocarpa x Populus deltoides (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3695 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Salicaceae; Saliceae; Populus DATA_SOURCE dbEST /// ENTRY T20064 Est Genome NAME eptt, P.tremula_tremuloides_est, 47664 DEFINITION Populus tremula x Populus tremuloides (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:47664 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Salicaceae; Saliceae; Populus DATA_SOURCE dbEST /// ENTRY T20065 Est Genome NAME epvr, P.virgatum_est, 38727 DEFINITION Panicum virgatum (switchgrass) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:38727 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade; Panicoideae; Paniceae; Panicum DATA_SOURCE dbEST /// ENTRY T20066 Est Genome NAME epvu, P.vulgaris_est, PHAVU, 3885 DEFINITION Phaseolus vulgaris (common bean) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3885 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus DATA_SOURCE dbEST /// ENTRY T20067 Est Genome NAME ercu, R.communis_est, RICCO, 3988 DEFINITION Ricinus communis (castor bean) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3988 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus DATA_SOURCE dbEST /// ENTRY T20068 Est Genome NAME errr, R.raphanistrum_est, RAPRA, 109997 DEFINITION Raphanus raphanistrum subsp. raphanistrum (wild radish) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:109997 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Raphanus DATA_SOURCE dbEST /// ENTRY T20069 Est Genome NAME erst, R.sativus_est, RAPSA, 3726 DEFINITION Raphanus sativus (radish) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3726 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Raphanus DATA_SOURCE dbEST /// ENTRY T20070 Est Genome NAME esmo, S.moellendorffii_est, 88036 DEFINITION Selaginella moellendorffii (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:88036 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; Selaginella DATA_SOURCE dbEST /// ENTRY T20071 Est Genome NAME etpu, T.pusilla_est, 188295 DEFINITION Triphysaria pusilla (dwarf owl's clover) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:188295 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; lamiids; Lamiales; Orobanchaceae; Rhinantheae; Triphysaria DATA_SOURCE dbEST /// ENTRY T20072 Est Genome NAME evcn, V.carteri_est, VOLCA, 3068 DEFINITION Volvox carteri f. nagariensis (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3068 LINEAGE Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox DATA_SOURCE dbEST /// ENTRY T20073 Est Genome NAME ecpg, C.pyrrhogaster_est, CYNPY, 8330 DEFINITION Cynops pyrrhogaster (Japanese firebelly newt) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:8330 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Caudata; Salamandroidea; Salamandridae; Cynops DATA_SOURCE dbEST /// ENTRY T20074 Est Genome NAME eamx, A.mexicanum_est, AMBME, 8296 DEFINITION Ambystoma mexicanum (axolotl) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:8296 LINEAGE Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Caudata; Salamandroidea; Ambystomatidae; Ambystoma DATA_SOURCE dbEST /// ENTRY T20075 Est Genome NAME esmn, S.mediterranea_est, SCHMD, 79327 DEFINITION Schmidtea mediterranea (freshwater planarian) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:79327 LINEAGE Eukaryota; Metazoa; Platyhelminthes; Turbellaria; Seriata; Tricladida; Paludicola; Dugesiidae; Schmidtea DATA_SOURCE dbEST /// ENTRY T20076 Est Genome NAME epni, P.nigra_est, POPNI, 3691 DEFINITION Populus nigra (lombardy poplar) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3691 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Salicaceae; Saliceae; Populus DATA_SOURCE dbEST /// ENTRY T20077 Est Genome NAME ezof, Z.officinale_est, ZINOF, 94328 DEFINITION Zingiber officinale (ginger) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:94328 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Zingiberaceae; Zingiber DATA_SOURCE dbEST /// ENTRY T20078 Est Genome NAME ecit, C.intybus_est, CICIN, 13427 DEFINITION Cichorium intybus (chicory) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:13427 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Cichorium DATA_SOURCE dbEST /// ENTRY T20079 Est Genome NAME eadl, A.deliciosa_est, ACTDE, 3627 DEFINITION Actinidia deliciosa (kiwifruit) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3627 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; Ericales; Actinidiaceae; Actinidia DATA_SOURCE dbEST /// ENTRY T20080 Est Genome NAME ecrt, C.reticulata_est, CITRE, 85571 DEFINITION Citrus reticulata (mandarin orange) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:85571 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Sapindales; Rutaceae; Citrus DATA_SOURCE dbEST /// ENTRY T20081 Est Genome NAME eptf, P.trifoliata_est, PONTR, 37690 DEFINITION Poncirus trifoliata (hardy orange) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:37690 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Sapindales; Rutaceae; Poncirus DATA_SOURCE dbEST /// ENTRY T20082 Est Genome NAME etcc, T.cacao_est, THECC, 3641 DEFINITION Theobroma cacao (cacao) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3641 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Malvales; Malvaceae; Byttnerioideae; Theobroma DATA_SOURCE dbEST /// ENTRY T20083 Est Genome NAME ecpp, C.papaya_est, CARPA, 3649 DEFINITION Carica papaya (papaya) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3649 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Caricaceae; Carica DATA_SOURCE dbEST /// ENTRY T20084 Est Genome NAME eahy, A.hypogaea_est, ARAHY, 3818 DEFINITION Arachis hypogaea (peanut) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3818 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis DATA_SOURCE dbEST /// ENTRY T20085 Est Genome NAME epco, P.coccineus_est, PHACN, 3886 DEFINITION Phaseolus coccineus (scarlet runner bean) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3886 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus DATA_SOURCE dbEST /// ENTRY T20086 Est Genome NAME evun, V.unguiculata_est, VIGUN, 3917 DEFINITION Vigna unguiculata (cowpea) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3917 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna DATA_SOURCE dbEST /// ENTRY T20087 Est Genome NAME eegu, E.guineensis_est, ELAGV, 51953 DEFINITION Elaeis guineensis (African oil palm) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:51953 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis DATA_SOURCE dbEST /// ENTRY T20088 Est Genome NAME ecjp, C.japonica_est, CRYJA, 3369 DEFINITION Cryptomeria japonica (Japanese cedar) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:3369 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Coniferopsida; Coniferales; Cupressaceae; Cryptomeria DATA_SOURCE dbEST /// ENTRY T20089 Est Genome NAME eacv, A.capillus-veneris_est, ADICA, 13818 DEFINITION Adiantum capillus-veneris (maidenhair fern) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:13818 LINEAGE Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Moniliformopses; Filicophyta; Filicopsida; Filicales; Pteridaceae; Adiantum DATA_SOURCE dbEST /// ENTRY T20090 Est Genome NAME ecpx, C.paradoxa_est, CYAPA, 2762 DEFINITION Cyanophora paradoxa (glaucophyte) (EST) ANNOTATION KAAS BLAST TAXONOMY TAX:2762 LINEAGE Eukaryota; Glaucocystophyceae; Cyanophoraceae; Cyanophora DATA_SOURCE dbEST /// ENTRY T30001 Meta Genome NAME 16339 DEFINITION Planktonic microbial communities from North Pacific Subtropical Gyre. ANNOTATION KAAS BLAST TAXONOMY TAX: 274854 LINEAGE Archaea; Euryarchaeota; Marine Group II; environmental samples TAXONOMY TAX: 360836 LINEAGE Archaea; Euryarchaeota; Marine Group III; environmental samples TAXONOMY TAX: 360837 LINEAGE Archaea; Crenarchaeota; environmental samples TAXONOMY TAX: 455500 455501 455502 455503 455504 455505 455506 455507 455508 455509 455510 455511 455512 455513 455514 455515 455516 455517 455518 455519 455520 455521 455522 455523 455524 455525 455526 455527 455528 455529 455530 455531 455532 455533 455534 455535 455536 455537 455538 455539 455540 455541 455542 455543 455544 455545 455546 455547 455548 455549 455550 455551 455552 455553 455554 455555 455556 455557 455558 455559 455560 455561 455562 LINEAGE unclassified sequences; environmental samples TAXONOMY TAX: 455563 455564 455565 455566 455567 455568 455569 455570 455571 455572 455573 455574 455575 455576 455577 455578 455579 455580 455581 455582 455583 455584 455585 455586 455587 455588 455589 455590 455591 455592 455593 455594 455595 455596 455597 455598 455599 455600 455601 455602 455603 455604 455605 455606 455607 455608 455609 455610 455611 455612 LINEAGE Archaea; Thaumarchaeota; marine archaeal group 1; environmental samples TAXONOMY TAX: 77133 413067 413068 415443 415444 415445 415446 415447 415448 455614 455615 662885 662886 662887 662888 662889 663362 LINEAGE Bacteria; environmental samples DATA_SOURCE GenBank ORIGINAL_DB NCBI STATISTICS Number of nucleotides: 4296787 Number of protein genes: 5057 /// ENTRY T30002 Meta Genome NAME 27781 DEFINITION Planktonic microbial communities from Monterey Bay, CA. ANNOTATION KAAS BLAST TAXONOMY TAX: 133804 248050 LINEAGE Bacteria; Proteobacteria; Gammaproteobacteria; environmental samples TAXONOMY TAX: 133822 480664 LINEAGE Archaea; Euryarchaeota; Marine Group II; environmental samples TAXONOMY TAX: 257382 257383 257384 257385 257386 257387 257388 257389 257390 257391 257392 257393 257394 257395 257396 257397 257398 257399 257400 257401 257402 257403 415435 415436 415437 415438 415439 415440 415441 415442 LINEAGE Bacteria; environmental samples TAXONOMY TAX: 482892 LINEAGE Bacteria; Proteobacteria; environmental samples TAXONOMY TAX: 482920 LINEAGE Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Nitrospinaceae; environmental samples DATA_SOURCE GenBank ORIGINAL_DB NCBI STATISTICS Number of nucleotides: 2126842 Number of protein genes: 2241 ///