Elhanan Borenstein, Ph.D.
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NetCooperate |
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NetCooperate is a software package for determining host-microbe and microbe-microbe cooperation and is available as an online tool (NetCooperate>Web) and as a Python module (NetCooperate>Python).
» NetCooperate>Web
Determine the Cooperate set of a network online.
» NetCooperate>Python
Download the Python module to add NetCooperate's functionality to your custom analysis programs.
» NetCooperate Manual
Learn how to use NetCooperate in your analysis.
Trying it out? Check out our example networks.
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Understanding the NetCooperate Analysis
NetCooperate is a web tool and a software package for determining host-microbe and microbe-microbe cooperative potential.
It specifically calculates two previously developed and validated metrics for species interaction: the Biosynthetic Support Score (BSS; see Borenstein and Feldman, 2009)
which quantifies the ability of a host species to supply the nutritional requirements of a parasite or commensal species,
and the Metabolic Complementarity Index (MCI; see Levy and Borenstein, 2013) which quantifies the complementarity of a pair of microbial organisms’ niches.
NetCooperate takes as input a pair of metabolic networks, and returns the pairwise metrics as well a list of metabolic compounds complementary between the two species.
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